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| 1 | Characterization of hepatitis B virus X gene quasispecies complexity in mono-infection and hepatitis delta virus superinfection显示文摘Hepatitis delta virus(HDV) seems to strongly suppress hepatitis B virus(HBV)replication, although little is known about the mechanism of this interaction. Both these viruses show a dynamic distribution of mutants, resulting in viral quasispecies. Next-generation sequencing is a viable approach for analyzing the composition of these mutant spectra. As the regulatory hepatitis B X protein(HBx) is essential for HBV replication, determination of HBV X gene(HBX)quasispecies complexity in HBV/HDV infection compared to HBV monoinfection may provide information on the interactions between these two viruses.AIM To compare HBV quasispecies complexity in the HBX 5' region between chronic hepatitis delta(CHD) and chronic HBV mono-infected patients.METHODS Twenty-four untreated patients were included: 7/24(29.2%) with HBeAgnegative chronic HBV infection(CI, previously termed inactive carriers), 8/24(33.3%) with HBeAg-negative chronic hepatitis B(CHB) and 9/24(37.5%) with CHD. A serum sample from each patient was first tested for HBV DNA levels.The HBX 5' region [nucleotides(nt) 1255-1611] was then PCR-amplified for subsequent next-generation sequencing(MiSeq, Illumina, United States). HBV quasispecies complexity in the region analyzed was evaluated using incidencebased indices(number of haplotypes and number of mutations), abundancebased indices(Hill numbers of order 1 and 2), and functional indices(mutation frequency and nucleotide diversity). We also evaluated the pattern of nucleotide changes to investigate which of them could be the cause of the quasispecies complexity.RESULTS CHB patients showed higher median HBV-DNA levels [5.4 logIU/mL,interquartile range(IQR) 3.5-7.9] than CHD(3.4 logIU/mL, IQR 3-7.6)(P = n.s.)or CI(3.2 logIU/mL, IQR 2.3-3.5)(P < 0.01) patients. The incidence and abundance indices indicated that HBV quasispecies complexity was significantly greater in CI than CHB. A similar trend was observed in CHD patients, although only Hill numbers of order 2 showed statistically significant differences(CHB2.81, IQR 1.11-4.57 vs CHD 8.87, 6.56-11.18, P = 0.038). There were no significant differences in the functional indices, but CI and CHD patients also showed a trend towards greater complexity than CHB. No differences were found for any HBV quasispecies complexity indices between CHD and CI patients. G-to-A and C-to-T nucleotide changes, characteristic of APOBEC3 G, were higher in CHD and CI than in CHB in genotype A haplotypes, but not in genotype D. The proportion of nt G-to-A vs A-to-G changes and C-to-T vs T-to-C changes in genotype A and D haplotypes in CHD patients showed no significant differences. In CHB and CI the results of these comparisons were dependent on HBV genotype.CONCLUSION The lower-replication CHD and CI groups show a trend to higher quasispecies complexity than the higher-replication CHB group. The mechanisms associated with this greater complexity require elucidation. | Cristina Godoy David Tabernero Sara Sopena Josep Gregori Maria Francesca Cortese Carolina González Rosario Casillas Mar?al Yll Ariadna Rando Rosa López-Martínez Josep Quer Gloria González-Aseguinolaza Rafael Esteban Mar Riveiro-Barciela Maria Buti Francisco Rodríguez-Frías | 2019 | World Journal of Gastroenterology2019，25，13： | 6 |
| 2 | Analysis of hepatitis B virus preS1 variability and prevalence of the rs2296651 polymorphism in a Spanish population显示文摘AIM To determine the variability/conservation of the domain of hepatitis B virus(HBV) pre S1 region that interacts with sodium-taurocholate cotransporting polypeptide(hereafter, NTCP-interacting domain) and the prevalence of the rs2296651 polymorphism(S267 F, NTCP variant) in a Spanish population. METHODS Serum samples from 246 individuals were included and divided into 3 groups: patients with chronic HBV infection(CHB)(n = 41, 73% Caucasians), patients with resolved HBV infection(n = 100, 100% Caucasians) and an HBV-uninfected control group(n = 105, 100% Caucasians). Variability/conservation of the amino acid(aa) sequences of the NTCPinteracting domain,(aa 2-48 in viral genotype D) and a highly conserved pre S1 domain associated with virion morphogenesis(aa 92-103 in viral genotype D) were analyzed by next-generation sequencing and compared in 18 CHB patients with viremia > 4 log IU/mL. The rs2296651 polymorphism was determined in all individuals in all 3 groups using an in-house real-time PCR melting curve analysis.RESULTS The HBV pre S1 NTCP-interacting domain showed a high degree of conservation among the examined viral genomes especially between aa 9 and 21(in the genotype D consensus sequence). As compared with the virion morphogenesis domain, the NTCPinteracting domain had a smaller proportion of HBV genotype-unrelated changes comprising > 1% of the quasispecies(25.5% vs 31.8%), but a larger proportion of genotype-associated viral polymorphisms(34% vs 27.3%), according to consensus sequences from Gen Bank patterns of HBV genotypes A to H. Variation/conservation in both domains depended on viral genotype, with genotype C being the most highly conserved and genotype E the most variable(limited finding, only 2 genotype E included). Of note, proline residues were highly conserved in both domains, and serine residues showed changes only to threonine or tyrosine in the virion morphogenesis domain. The rs2296651 polymorphism was not detected in any participant.CONCLUSION In our CHB population, the NTCP-interacting domain was highly conserved, particularly the proline residues and essential amino acids related with the NTCP interaction, and the prevalence of rs2296651 was low/null. | Rosario Casillas David Tabernero Josep Gregori Irene Belmonte Maria Francesca Cortese Carolina González Mar Riveiro-Barciela Rosa Maria López Josep Quer Rafael Esteban Maria Buti Francisco Rodríguez-Frías | 2018 | World Journal of Gastroenterology2018，24，6： | 5 |
| 3 | Total synthesis of O-methylsterigrnatocystin using N-alkylnitrilium salts and carbonyl-alkene interconversion in a new xanthone synthesis 显示文摘 | Casillas L K Townsend C A | 1999 | J Org Chem1999，64，11： | 1 |
| 4 | Inducibility of spawning and reproductive success of female English sole (Parophrys vetulus) from urban and nonurban areas of Puget Sound, Washington显示文摘 | Casillas E Misitano D Johnson L L | 1991 | Mar Environ Res1991，31，： | 1 |
| 5 | Dosda R: Enhancement characteristics of hepatic focal nodular hyperplasia and its scar by dynamic magnetic resonance imaging显示文摘 | Marti-Bonmati L Casillas C | 2000 | Magma2000，10，： | 1 |
| 6 | Sarganin and chonalgin,new antiotic substances from marine algae from Puerto Rico显示文摘 | Martinez-Nadal NG Rodriguez L V Casillas C | 1964 | Antimicrob Agents Chemother1964，68，： | 1 |
| 7 | Patterns of ooeyte development and related changes in plasma 17-β estradiol, vitellogenin, and plasma chemistry in English sole Parophrys vetulus Girard 显示文摘 | Johnson L L Casillas E Myers M S | 1991 | Journal of Experimental Marine Biology and Ecology1991，152，2： | 1 |
| 8 | Olanzapine orally disintegrating tablet:a review of efficacy and compliance显示文摘 | San L Casillas M Ciudad A | 2008 | CNS Neurosci Ther2008，143，20： | 1 |
| 9 | Badiofrequen-cy abla-tion of hepatic lesions:a review显示文摘 | Krishnamurthy vN casillas VJ Latorre L | 2003 | Appl Radi-ol2003，10，： | 1 |
| 10 | Clean up of phenylurea herbicides in plant sample extracts using molecularly imprinted polymers显示文摘 | TAMAYO F G CASILLAS J L MARTIN-ESTEBAN A | 2005 | Anal Bioanal Chem2005，381，： | 1 |
| 11 | Learning, unlearning and internationalization: evidence from the pre- export phase显示文摘 | CASILLAS J C ACEDO F J BARBERO J L | 2009 | International Journal of Information Man- agement2009，30，2： | 1 |
| 12 | Learning, unlearning and internationalisation : Evidence from the pre - export phase 显示文摘 | CASILLAS J C ACEDO F J BARBERO J L | 2010 | International Journal of Information Management2010，30，2： | 1 |
| 13 | Contaminant effects on ovarian development in English sole (Parophrys vetulus) from Puget Sound Washington显示文摘 | JOHNSON L L CASILLAS E COLLIER T K | 1988 | Canadian Journal of Fisheries and Aquatic Sciences1988，45，： | 1 |
| 14 | Learning cooperative linguistic fuzzy rules using the bestworst ant systems algorithm显示文摘 | Casillas J Cordon O Fernandez de Viana L Herrera F | 2005 | International Journal of Intelligent Systems2005，20，： | 1 |
| 15 | Clean up of phenylurea herbicides in plant sample extracts using molecularly imprinted pol-ymers显示文摘 | Tamayo F G Casillas J L Martin-Esteban A | 2005 | Anal Bioanal Chem2005，381，6： | 1 |
| 16 | Radiofrequency ablation of hepatic lesions:areview显示文摘 | Krishnamurthy VN Casillas VJ Latorre L | 2003 | Appl Radiol2003，10，： | 1 |
| 17 | A Configurational Approach of the Relationship between Entrepreneurial Orientation and Growth of Family Firms显示文摘 | Jose C Casillas Ana M Moreno Jose L Barbero | 2010 | Family Business Review2010，23，3： | 1 |
| 18 | Laser shock processing of 6061-T6 Al alloy with 1064 nm and 532 nm wavelengths 显示文摘 | GOMEZ-ROSAS G RUBIO-GONZALEZ C OCA-A J L MOLPECERES C PORRO J A MORALES M CASILLAS F J | 2010 | Applied Surface Science2010，256，20： | 1 |
| 19 | Revisiting incubation performance:how incubator typology affects reslt显示文摘 | BARBERO J L CASILLAS J C RAMOS A GUITAR S | 2012 | Technological Forecasting&Social Change2012，，79： | 1 |
| 20 | The use of plasma parameters to predict ovarian maturation stage in English sole Parophrys vetulus girard显示文摘 | Johnson L L Casillas E | | 0，，02： | 1 |
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