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| 1 | RAPD 标记在苹果属种间杂交一代的分离方式显示文摘以富士苹果和山定子及二者的种间杂交F1代为试材,对RAPD标记的分离方式进行了研究。结果表明,RAPD标记在F1代的分离方式可归为3类,即呈孟德尔分离、偏离孟德尔分离比例和异常分离。呈孟德尔分离的情况有:不分离(代表了父母本中相应RAPD标记的5种组合:AA×AA、AA×Aa、Aa×AA、AA×a、a×AA)、1∶1分离(代表了父母本中相应RAPD标记的2种组合:Aa×a、aa×Aa)和3∶1分离(代表了父母本中相应RAPD标记的1种组合:Aa×Aa)。异常分离的标记包括:F1代出现双亲均不具备的标记、分子量在不同F1个体间变化的标记,以及隔代遗传的标记。据对200个RAPD标记的统计分析,不分离标记、按1∶1或3∶1比例正常分离的标记、偏离孟德尔分离比例的标记和异常分离标记分别占45.5%、45.0%、8.0%和1.5%;双亲共有标记中74.7%不发生分离,单亲特有标记中57.1%~79.6%发生正常分离;富士特有标记中不分离标记占33.3%,而山定子特有标记中不分离标记只占4.3%,表明富士基因组中纯合基因位点的比例要高于山定子。对异常分离的RAPD标记等进行了讨论。 | 刘孟军 Shin.,UK | 1998 | 园艺学报1998，25，3： | 38 |
| 2 | Establishment and characterization of four human hepatocellular carcinoma cell lines containing hepatitis B virus DNA显示文摘INTRODUCTIONHepatocelularcarcinoma(HCC)isoneofthemostprevalentmalignantdiseasesencounteredintheworld,kilingupto1milionpeoplea... | Jae Ho Lee 1, Ja Lok Ku 1, Young Jin Park 1,2 , Kuhn Uk Lee 2, Woo Ho Kim 3 and Jae Gahb Park 1,2 | 1999 | World Journal of Gastroenterology1999，5，4： | 28 |
| 3 | Restoration of common bile duct diameter within 2 weeks after endoscopic stone retraction is a preventive factor for stone recurrence显示文摘Background: Little information is available about the relationship between restoration of common bile duct(CBD) diameter after endoscopic stone retraction and recurrence of CBD stones in elderly patients.The present study was to determine whether restoration of CBD diameter is a preventive factor for CBD stone recurrence in elderly patients who underwent endoscopic retrograde cholangiopancreatography(ERCP).Methods: From January 2006 to December 2010, 238 patients underwent the first and the second session of ERCP for the removal of CBD stones. Among them, 173 were over 65 years old. These patients were divided into recurrent group and non-recurrent group. Restoration of CBD diameter and patients' characteristics were compared.Results: There was no statistical difference in patients' characteristics, associated diseases, or ERCP-related complications between the two groups. Reduction of CBD diameter was significantly larger in the nonrecurrent group(2.7 ± 1.7 mm) compared to that in the recurrent group(1.4 ± 2.3 mm, P = 0.002). The proportion of patients with restoration of CBD diameter were significantly lower in the recurrent group(6/42, 14.3%) compared with that in the non-recurrent group(67/131, 51.1%)(P < 0.01).Conclusions: There is an inverse relationship between restoration of CBD diameter and CBD stone recurrence. Therefore, patients without restoration of CBD diameter within 2 weeks after endoscopic stone removal should be monitored more frequently. | Jin Jeon Sung Uk Lim Chang-Hwan Park Chung-Hwan Jun Seon-Young Park Jong-Sun Rew | 2018 | Hepatobiliary & Pancreatic Diseases International2018，17，3： | 25 |
| 4 | Endoscopic removal of gastric ectopic pancreas:An initial experience with endoscopic submucosal dissection显示文摘AIM:To evaluate the therapeutic usefulness and safety of endoscopic resection in patients with gastric ectopic pancreas.METHODS:A total of eight patients with ectopic pancreas were included.All of them underwent endoscopic ultrasonography before endoscopic resection.Endo-scopic resection was performed by two methods:endo-scopic mucosal resection(EMR)by the injection-and-cut technique or endoscopic mucosal dissection(ESD).RESULTS:We planned to perform EMR in all eight cases but EMR was successful in only four cases.In the other four cases,saline spread into surrounding normal tissues and the lesions becameattened,which made it impossible to remove them by EMR.Inthose four cases,we performed ESD and removed the lesions without any complications.CONCLUSION:If conventional EMR is difficult to remove gastric ectopic pancreas,ESD is a feasible alternative method for successful removal. | Dong Yup Ryu Gwang Ha Kim Do Youn Park Bong Eun Lee Jae Hoon Cheong Dong Uk Kim Hyun Young Woo Jeong Heo Geun Am Song | 2010 | World Journal of Gastroenterology2010，16，36： | 24 |
| 5 | Some basic concepts and problems on the petrogenesis of intra-plate ocean island basalts显示文摘Basaltic magmatism that builds intra-plate ocean islands is often considered to be genetically associated with 'hotspots' or 'mantle plumes'. While there have been many discussions on why ocean island basalts (OIB) are geochemically highly enriched as an integral part of the mantle plume hypothesis, our current understanding on the origin of OIB source material remains unsatisfactory, and some prevailing ideas need revision. One of the most popular views states that OIB source material is recycled oceanic crust (ROC). Among many problems with the ROC model, the ocean crust is simply too depleted (e.g., [La/Sm]PM <1) to be source material for highly enriched (e.g., [La/Sm]PM >> 1) OIB. Another popular view states that the enriched component of OIB comes from recycled continental crust (RCC, i.e.; terrigenous sediments). While both CC and OIB are enriched in many incompatible elements (e.g., both have [La/Sm]PM >>1), the CC has characteristic enrichment in Pb and deletion in Nb, Ta, P and Ti. Such signature is too strong to be eliminated such that CC is unsuitable as source material for OIB. Plate tectonics and mantle circulation permit the presence of ROC and RCC materials in mantle source regions of basalts, but they must be volumetrically insignificant in contributing to basalt magmatism. The observation that OIB are not only enriched in incompatible elements, but also enriched in the progressively more incompatible elements indicates that the enriched component of OIB is of magmatic origin and most likely associated with low-degree melt metasomatism. H2O and CO2 rich incipient melt may form in the seismic low velocity zone (LVZ). This melt will rise because of buoyancy and concentrate into a melt rich layer atop the LVZ to metasomatize the growing lithosphere, forming the metasomatic vein lithologies. Erupted OIB melts may have three components: (1) fertile OIB source material from depth that is dominant, (2) the melt layer, and (3) assimilation of the metasomatic vein lithologies formed earlier in the growing/grown lithosphere. It is probable that the fertile source material from depth may be (or contain) recycled ancient metasomatized deep portions of oceanic lithosphere. In any attempt to explain the origin of mantle isotopic end-members as revealed from global OIB data, we must (1) remember our original assumptions that the primitive mantle (PM) soon after the core separation was compositionally uniform/homogeneous with the core playing a limited or no role in causing mantle isotopic heterogeneity; (2) not use OIB isotopes to conclude about the nature and compositions of ultimate source materials without understanding geochemical consequences of subduction zone metamorphism; and (3) ensure that models and hypotheses are consistent with the basic petrology and major/trace element geochemistry. | NIU Yaoling1,2,3 1 Department of Earth Sciences, Durham University, Durham DH1 3LE, UK 2 School of Earth Sciences and Resources, China University of Geosciences, Beijing 100083, China 3 School of Earth and Space Sciences, Peking University, Beijing 100871, China | 2009 | Chinese Science Bulletin2009，54，22： | 23 |
| 6 | Geochronology of middle Neoproterozoic volcanic deposits in Yangtze Craton interior of South China and its implications to tectonic settings显示文摘Here we report new SHRIMP dating results of the crystal tuff in Ejiaao Formation of middle Banxi Group in northern Guizhou. The results indicate that the volcanic deposition occurred at ~780 Ma. We also suggests that the igneous activities across Yangtze Craton with diabase dyke swarms and basal volcanic rocks during middle Banxi time are indicative of the episodic, extensive and vigorous great bimodal igneous events during middle Neoproterozoic (825-720 Ma) in South China. The characteristics of the igneous series are contrary to the model claiming they are of island-arc origin, but suggest that they are the records of rifting process and may be related to the episodic plume activities leading to the break-up of Rodinia. | WANG ZhengJiang1, WANG Jian1, DUAN TaiZhong2, XIE Yuan1, ZHUO JieWen1,3 & YANG Ping1 1 Chengdu Institute of Geology and Mineral Resources, Ministry of Land and Resources, Chengdu 610082, China 2 Marathon Oil UK Ltd., Aberdeen, Scotland, AB15 6FZ, UK 3 Graduate Department, Chinese Academy of Geological Sciences, Beijing 100037, China | 2010 | Science China Earth Sciences2010，53，9： | 20 |
| 7 | Editor's note显示文摘Robert (Bob) J. Stern is a Professor of Geosciences at the University of Texas at Dallas. He received a BSc in Geology with honors from the University of California at Davis in 1974, and a PhD in Earth Sciences from the University of California at San Diego (Scripps Institution of Oceanography) in 1979. He held a postdoctoral fellowship in the Department of Terrestrial Magnetism at the Carnegie Institution of | Yaoling Niu, Executive Editor, Department of Earth Sciences, Durham University, UK | 2007 | Chinese Science Bulletin2007，52，5： | 17 |
| 8 | Proton pump inhibitor administration delays rebleeding after endoscopic gastric variceal obturation显示文摘AIM:To clarify the efficacy of proton pump inhibitors(PPIs)after endoscopic variceal obturation(EVO)with N-butyl-2-cyanoacrylate.METHODS:A retrospective study was performed on16 liver cirrhosis patients with gastric variceal bleeding that received EVO with injections of N-butyl-2-cyanoacrylate at a single center(Kyung Hee University Hospital at Gangdong)from January 2008 to December 2012.Medical records including patient characteristics and endoscopic findings were reviewed.Treatment results,liver function,serum biochemistry and cirrhosis etiology were compared between patients receiving PPIs and those that did not.Furthermore,the rebleeding interval was compared between patients that received PPI treatment after EVO and those who did not.RESULTS:The patient group included nine males and seven females with a mean age of 61.8±11.7years.Following the EVO procedure,eight of the 12patients that received PPIs and three of the four nonPPI patients experienced rebleeding.There were no differences between the groups in serum biochemistry or patient characteristics.The rebleeding rate was not significantly different between the groups,however,patients receiving PPIs had a significantly longer rebleeding interval compared to non-PPI patients(22.2±11.2mo vs 8.5±5.5 mo;P=0.008).The duration of PPI use was not related to the rebleeding interval.A total of six patients,who had ulcers at the injection site,exhibited a shorter rebleeding interval(16.8±5.9 mo)than patients without ulcers(19.9±3.2 mo),though this difference was not statistically significant.CONCLUSION:PPI therapy can extend the rebleeding interval,and should therefore be considered after EVO treatment for gastric varices. | Won Seok Jang Hyun Phil Shin Joung Ⅱ Lee Kwang Ro Joo Jae Myung Cha Jung Won Jeon Jun Uk Lim | 2014 | World Journal of Gastroenterology2014，20，45： | 17 |
| 9 | Peat molecular fossils recording paleoclimatic change and organism replacement显示文摘The occurrence of the dominant C23 n-alkane derived from bryophyte was demonstrated to be related to the cold climate, based on the GC and GC/MS analyses on a 40-cm long peat core, in which this compound exponentially varies in abundance with the depth corresponding to the well-known second Little Ice Age. Both the variation of the chemical components of modern bryophyte resulted from climatic change and the ecological data about the biological growth influenced by climate shed light on the point that the variation of this compound in the peat was related to the cold climate. This was also evidenced by the previously-reported lacustrine data. In addition, the variations of the ratios of ketones/esters and C24 n-alkene/n-alkane (C24:1/024:0) display the trend identical with that of organisms, implicating the replacement between bryophyte and monocotyledon occurring in the peat core. | XIE Shucheng & R. P. Evershed1. Faculty of Earth Science, China University of Geosciences, Wuhan 430074, China 2. School of Chemistry, University of Bristol, Bristol, BS8 1TS, UK Correspondence should be addressed to Xie Shucheng (e-mail: scxie@ public.wh.hb.cn) | 2001 | Chinese Science Bulletin2001，46，20： | 16 |
| 10 | LITHOSPHERE-ASTHENOSPHERE INTERACTION: A COMPARATIVE STUDY ON CENOZOIC AND MESOZOIC BASALTS AROUND BOHAI AREA | Yigang Xu Weiming Fan and Ge Lin( Guangzhou Institute of Geochemistry , Chinese Academy of Sciences , Guangzhou , P. R, China)(Department of Gedegy, Royal Holoway Univoersity of London, Egham, Surrey, TW20OEX , UK)(Changsha Institute of Geotectonics,Chin | 1995 | Geotectonica et Metallogenia1995，19，4： | 16 |
| 11 | Relationship between diversion colitis and quality of life in rectal cancer显示文摘AIM:To investigated the incidence of diversion colitis(DC) and impact of DC symptoms on quality of life(QoL) after ileostomy reversal in rectal cancer.METHODS:We performed a prospective study with 30 patients who underwent low anterior resection and the creation of a temporary ileostomy for the rectal cancer between January 2008 and July 2009 at the Department of Surgery,Korea University Anam Hospital.The participants totally underwent two rounds of the examinations.At first examination,endoscopies,tissue biopsies,and questionnaire survey about the symptom were performed 3-4 mo after the ileostomy creations.At second examination,endoscopies,tissue biopsies,and questionnaire survey about the symptom and QoL were performed 5-6 mo after the ileostomy reversals.Clinicopathological data were based on the histopathological reports and clinical records of the patients.RESULTS:At the first examination,all of the patients presented with inflammation,which was mild in 15(50%) patients,moderate in 11(36.7%) and severe in 4(13.3%) by endoscopy and mild in 14(46.7%) and moderate in 16(53.3%) by histology.At the second examination,only 11(36.7%) and 17(56.7%) patients had mild inflammation by endoscopy and histology,respectively.There was no significant difference in DC grade between the endoscopic and the histological findings at first or second examination.The symptoms detected on the first and second questionnaires were mucous discharge in 12(40%) and 5(17%) patients,bloody discharge in 5(17%) and 3(10%) patients,abdominal pain in 4(13%) and 2(7%) patients and tenesmus in 9(30%) and 5(17%) patients,respectively.We found no correlation between the endoscopic or histological findings and the symptoms such as mucous discharge,bleeding,abdominal pain and tenesmus in both time points.Diarrhea was detected in 9 patients at the second examination;this number correlated with the severity of DC(0%,0%,66.7%,33.3% vs 0%,71.4%,23.8%,4.8%,P = 0.001) and the symptom-related QoL(r =-0.791,P < 0.001).CONCLUSION:The severity of DC is related to diarrhea after an ileostomy reversal and may adversely affect QoL. | Dong Nyoung Son Dong Jin Choi Si Uk Woo Jin Kim Bo Ra Keom Chul Hwan Kim Se Jin Baek Seon Hahn Kim | 2013 | World Journal of Gastroenterology2013，19，4： | 14 |
| 12 | The role of NBS1 in DNA double strand break repair, telomere stability, and cell cycle checkpoint control显示文摘真核细胞的房间的染色体在由环境代理人和内长的新陈代谢的副产品的连续袭击下面。在 DNA 导致的损坏通常导致细胞的事件的串联, DNA 损坏反应。DNA 损坏反应的失败能由减少 DNA 修理的效率和忠实导致恶意的开发。NBS1 蛋白质是在对 DNA 损坏和 chromosomal 正直的维护的细胞的反应起一个关键作用的 MRE11/RAD50/NBS1 建筑群(MRN ) 的一个部件。在 NBS1 基因的变化为 Nijmegen 破裂症候群(NBS ) 负责,给予增加的倾向到恶意的开发的世袭混乱。从病人们在 DNA 双海滨裂缝的修理指向缺乏的 NBS 孤立的房间的 phenotypic 特征。这里,我们在 DNA 损坏反应考察 NBS1 的角色的当前的知识。强调在 DNA 双海滨修理,察觉到并且发信号的 DNA 损坏的调整,房间周期检查点控制和 telomere 稳定性的维护被放在 NBS1 的角色上。 | Ying Zhang Junqing Zhou Chang UK Lim | 2006 | Cell Research2006，16，1： | 13 |
| 13 | Crank conditions and rotatability of 3-RRR planar parallel mechanisms显示文摘This paper investigates the rotatability of planar parallel mechanisms by revealing the crank conditions that relate to link parameters.The paper extends the theorem of assemblability and the rotatability criterion and applies these criteria to parallel mechanisms in investigating the crank conditions of a parallel mechanism,leading to classification of three types of crank existing conditions including three-crank’s,six-crank’s and nine-crank’s of 3-RRR planar parallel mechanisms.The results are summarized as constraint conditions in relation with link parameters with a concluding table and case studies. | LI RuiQin 1 &DAI Jian S 2 1 College of Mechanical Engineering and Automation,North University of China,Taiyuan 030051,China 2 Department of Mechanical Engineering,King’s College London,University of London,WC2R 2LS,UK | 2009 | Science China(Technological Sciences)2009，52，12： | 12 |
| 14 | Magnetic resonance imaging in rectal cancer:A surgeon's perspective显示文摘Magnetic resonance imaging(MRI)in rectal cancer was first investigated in 1999 and has become almost mandatory in planning rectal cancer treatment.MRI has a high accuracy in predicting circumferential resection margin involvement and is used to plan neoadjuvant therapy.The accuracy of MRI in assessing mesorectal lymph nodes remains moderate,as there are no reliable criteria to assess nodal involvement.MRI seems to be good in assessing peritoneal involvement in upper rectal cancer;this however has been assessed in only a few studies and needs further research.For low rectal cancers,mesorectum is thin at the level of levator ani especially in relation to prostate;so predicting circumferential resection margin involvement is not easy.However high spatial resolution coronal imaging shows levator muscles,sphincter complex and intersphincteric plane accurately.This is used to stage low rectal tumors and plan plane of surgery(standard surgery,intersphincteric resection,Extralevator abdominoperineal resection).While most centres perform MRI post chemoradiotherapy,its role in accurate staging post neoadjuvant therapy remains debatable.THe role of Diffusion weighted MRI post neoadjuvant therapy is being evaluated in research settings. | Avanish P Saklani Sung Uk Bae Amy Clayton Nam Kyu Kim | 2014 | World Journal of Gastroenterology2014，20，8： | 11 |
| 15 | Arsenic trioxide promotes mitochondrial DNA mutation and cell apoptosis in primary APL cells and NB4 cell lines显示文摘This study aimed to investigate the effects of arsenic trioxide(As2O3) on the mitochondrial DNA(mtDNA) of acute promyelocytic leukemia(APL) cells.The NB4 cell line was treated with 2.0 μmol/L As2O3 in vitro,and the primary APL cells were treated with 2.0 μmol/L As2O3 in vitro and 0.16 mg kg-1 d-1 As2O3 in vivo.The mitochondrial DNA of all the cells above was amplified by PCR,directly sequenced and analyzed by Sequence Navigatore and Factura software.The apoptosis rates were assayed by flow cytometry.Mitochondrial DNA mutation in the D-loop region was found in NB4 and APL cells before As2O3 use,but the mutation spots were remarkably increased after As2O3 treatment,which was positively correlated to the rates of cellular apoptosis,the correlation coefficient:rNB4-As2O3=0.973818,and rAPL-As2O3=0.934703.The mutation types include transition,transversion,codon insertion or deletion,and the mutation spots in all samples were not constant and regular.It is revealed that As2O3 aggravates mtDNA mutation in the D-loop region of acute promyelocytic leukemia cells both in vitro and in vivo.Mitochondrial DNA might be one of the targets of As2O3 in APL treatment. | MENG Ran1,ZHOU Jin2,SUI Meng3,LI ZhiYong4,FENG GuoSheng1 & YANG BaoFeng2 1 Division of Neurology,the Ninth Clinical Medical College of Beijing University(Shijitan Hospital),Beijing 100038,China 2 The First Hospital of Harbin Medical University,Harbin 150001,China 3 Management Information System,University of International Business and Economics,Beijing 100029,China 4 Department of Radiology,Cambridge University Hospitals NHS Foundation Trust Box 219 Level 5,Addenbrooke’s Hospital Cambridge CB2 0QQ,UK | 2010 | Science China(Life Sciences)2010，53，1： | 10 |
| 16 | Thermoelastic properties of sandwich materials with pin-reinforced foam cores显示文摘Pin-reinforced foam is a novel type of sandwich core materials formed by inserting pins(trusses) into a foam matrix to create a truss-like network reinforced foam core.Upon loading,the pins deform predominantly by local stretching whilst the deformation of foam is governed by local bending.This paper presents a theoretical study on the thermoelasticity of pin-reinforced foam sandwich cores.To calculate the effective thermoelastic properties of pin-reinforced foam cores,the energy-based homogenization approach is employed to develop a micromechanics-based model,calibrated by the existing experimental data.It is found that the stiffness of the sandwich core is mainly governed by pin reinforcements:the foam matrix contributes little to sandwich stiffness.Compared with traditional foam cores without pin reinforcements,the changes in inplane thermal expansion coefficients are not vigorous as a result of pin reinforcements,while the through-thickness thermal expansion coefficient changes significantly.It is also demonstrated that it is possible to design materials with zero or negative thermal expansion coefficients under such a context. | LU TianJian1,LIU Tao2,3 & DENG ZiChen2,4 1 MOE Key Laboratory of Strength and Vibration,School of Aerospace,Xi’an Jiaotong University,Xi’an 710049,China 2 Department of Engineering Mechanics,Northwestern Polytechnical University,Xi’an 710072,China 3 Department of Engineering,University of Cambridge,Cambridge CB2 1PZ,UK 4 State Key Laboratory of Structural Analysis of Industrial Equipment,Dalian University of Technology,Dalian 116024,China | 2008 | Science China(Technological Sciences)2008，51，12： | 10 |
| 17 | Serum positive cagA in patients with non-ulcer dyspepsia and peptic ulcer disease from two centers in different regions of Turkey显示文摘AIM: To investigate and compare frequencies of serum positive cagA in patients from two separate regions of Turkey who were grouped according to the presence of peptic ulcer disease or non-ulcer dyspepsia.METHODS: One hundred and eighty Helicobacter pyloripositive patients with peptic ulcer disease or non-ulcer dyspepsia were included in the study. One hundred and fourteen patients had non-ulcer dyspepsia and 66 had peptic ulcer disease (32 with gastric ulcers and/or erosions and 34with duodenal ulcers). Each patient was tested for serum antibody to H. pylori cagA protein by enzyme immunoassay.RESULTS: The total frequency of serum positive cagA in the study group was 97.2 %. The rates in the patients with peptic ulcers and in those with non-ulcer dyspepsia were 100% and 95.6%, respectively. These results were similar to those reported in Asian studies, but higher than those that have been noted in other studies from Turkey and Western countries.CONCLUSION: The high rates of serum positive cagA in these patients with peptic ulcer disease and non-ulcer dyspepsia were similar to results reported in Asia. The fact that there was high seroum prevalence regardless of ulcer status suggests that factors other than cagA might be responsible for ulceration or other types of severe pathology in H. pylori-positive individuals. | Ender Serin Uur Yilmaz Ganiye Künefeci Birol zer Yüksel Gümürdülü Mustafa Gülü Fazilet Kayaseluk Sedat Boyaciolu | 2003 | World Journal of Gastroenterology2003，9，4： | 10 |
| 18 | Endoscopic papillary balloon dilation:Revival of the old technique显示文摘Radiologists first described the removal of bile duct stones using balloon dilation in the early 1980s.Recently,there has been renewed interest in endoscopic balloon dilation with a small balloon to avoid the complications of endoscopic sphincterotomy(EST)in young patients undergoing laparoscopic cholecystectomy.However,there is a disparity in using endoscopic balloon papillary dilation(EPBD)between the East and the West,depending on the origin of the studies.In the early 2000s,EST followed by endoscopic balloon dilation with a large balloon was introduced to treat large or difficult biliary stones.Endoscopic balloon dilation with a large balloon has generally been recognized as an effective and safe method,unlike EPBD.However,fatal complications have occurred in patients with endoscopic papillary large balloon dilation(EPLBD).The safety of endoscopic balloon dilation is still a debatable issue.Moreover,guidelines of indications and techniques have not been established in performing endoscopic balloon dilation with a small balloon or a large balloon.In this article,we discuss the issue of conventional and large balloon endoscopic dilation.We also suggest the indications and optimal techniques of EPBD and EPLBD. | Seung Uk Jeong Sung-Hoon Moon Myung-Hwan Kim | 2013 | World Journal of Gastroenterology2013，19，45： | 10 |
| 19 | The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production显示文摘Natural products are among the most important sources of lead molecules for drug discovery.With the development of affordable whole-genome sequencing technologies and other‘omics tools,the field of natural products research is currently undergoing a shift in paradigms.While,for decades,mainly analytical and chemical methods gave access to this group of compounds,nowadays genomics-based methods offer complementary approaches to find,identify and characterize such molecules.This paradigm shift also resulted in a high demand for computational tools to assist researchers in their daily work.In this context,this review gives a summary of tools and databases that currently are available to mine,identify and characterize natural product biosynthesis pathways and their producers based on‘omics data.A web portal called Secondary Metabolite Bioinformatics Portal(SMBP at http://gffzz02e507a9d8884f08hucpcv9k6qxx06x9p.ffgz.tsg.suse.edu.cn)is introduced to provide a one-stop catalog and links to these bioinformatics resources.In addition,an outlook is presented how the existing tools and those to be developed will influence synthetic biology approaches in the natural products field. | Tilmann Weber Hyun Uk Kim | 2016 | Synthetic and Systems Biotechnology2016，1，2： | 10 |
| 20 | Modeling Superhydrophobic Contact Angles and Wetting Transition显示文摘It is well known that surface roughness has a very important effect on superhydrophobicity.The Wenzel and Cassie-Baxtermodels,which correspond to the homogeneous and heterogeneous wetting respectively,are currently primary instructions fordesigning superhydrophobic surfaces.However,the particular drop shape that a drop exhibits might depend on how it is formed.A water drop can occupy multiple equilibrium states,which relate to different local minimal energy.In some cases,both equilibriumstates can even co-exist on a same substrate.Thus the apparent contact angles may vary and have different values.Wediscuss how the Wenzel and Cassie-Baxter equations determine the homogeneous and heterogeneous wetting theoretically.Contact angle analysis on hierarchical surface structure and contact angle hysteresis has been put specific attention.In particular,we study the energy barrier of transition from Cassie-Baxter state to Wenzel state,based on existing achievement by previousresearchers,to determine the possibility of the transition and how it can be interpreted.It has been demonstrated that surfaceroughness and geometry will influence the energy required for a drop to get into equilibrium,no matter it is homogeneous orheterogeneous wetting. | Nan Gao, Yuying YanDBE, Faculty of Engineering, University of Nottingham, NGl 2RD, UK | 2009 | Journal of Bionic Engineering2009，6，4： | 9 |
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