META-R:A software to analyze data from multi-environment plant breeding trials

查看全文 作　　者：Gregorio [1]Alvarado;Francisco [1,2]M.Rodríguez;Angela [1,4]Pacheco;Juan [1]Burgueño;[1,4]JoséCrossa;Mateo [1,3]Vargas;Paulino Pérez-[4]Rodríguez;Marco A.Lopez-[5]Cruz

机构地区：[1]Biometrics and Statistics Unit,International Maize and Wheat Improvement Center(CIMMYT),Mexico,DF 6-641,06600,Mexico;[2]Centro de Investigación en Matemáticas(CIMAT)A.C.,Jalisco S/N,Col.Valenciana,Guanajuato,Gto 402,36023,Mexico;[3]Universidad Autónoma Chapingo,Carretera Federal México-Texcoco km 38.5,Texcoco,México 63,56230,Mexico;[4]Colegio de Postgraduados,Carretera México-Texcoco Km.36.5,Montecillo,Texcoco 63,56231,Mexico;[5]Department of Plant,Soil and Microbial Sciences,Michigan State University,1066 Bogue St,East Lansing,MI 48824,USA

出　　处：《The Crop Journal》索引2020年第8卷第5期,共12页

基　　金：We are grateful for the financial support provided by the Bill&Melinda Gates Foundation and CIMMYT's CGIAR CRP(MAIZE and WHEAT),as well as the USAID Projects(Cornell University and Kansas State University)that generated the CIMMYT wheat data analyzed in this study.We acknowledge the financial support provided by the Foundation for Research Levy on Agricultural Products(FFL)and the Agricultural Agreement Research Fund(JA)in Norway through NFR grant 267806. 摘　　要：META-R(multi-environment trial analysis in R)is a suite of R scripts linked by a graphical user interface(GUI)designed in Java language.The objective of META-R is to accurately analyze multi-environment plant breeding trials(METs)by fitting mixed and fixed linear models from experimental designs such as the randomized complete block design(RCBD)and the alpha-lattice/lattice designs.META-R simultaneously estimates the best linear and unbiased estimators(BLUEs)and the best linear and unbiased predictors(BLUPs).Additionally,it computes the variance-covariance parameters,as well as some statistical and genetic parameters such as the least significant difference(LSD)at 5%significance,the coefficient of variation in percentage(CV),the genetic variance,and the broad-sense heritability.These parameters are very important in the selection of top performing genotypes in plant breeding.META-R also computes the phenotypic and genetic correlations among environments and between traits,as well as their statistical significance.The genetic correlations between environments or traits can be visualized in a biplot graph or a tree diagram(dendrogram).Genetic correlations are very important for identifying environments with similar behavior or making indirect selection and identifying the most highly associated traits.META-R performs multi-environment analyses by using the residual maximum likelihood(REML)method;these analyses can be done by environment,across environments by grouping factors(stress conditions,nitrogen content,etc.)and across environments;the analyses across environments can be done with a pre-defined degree of heritability. 关键词：environments BREEDING variance

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META-R:A software to analyze data from multi-environment plant breeding trials

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