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FungalTraits:a user-friendly traits database of fungi and fungus-like stramenopiles

查看全文 作　　者：Sergei [1,2]Põlme;Kessy [2]Abarenkov;RHenrik [3,4]Nilsson;Björn [5]D.Lindahl;Karina Engelbrecht [6]Clemmensen;Havard [7]Kauserud;Nhu [8]Nguyen;Rasmus [9]Kjøller;Scott [10]T.Bates;Petr [11]Baldrian;Tobias Guldberg [12]Frøslev;Kristjan [1]Adojaan;Alfredo [13]Vizzini;Ave [1]Suija;Donald [14]Pfister;Hans-Otto [15]Baral;Helle [16]Järv;Hugo [17,18]Madrid;Jenni [19]Nordén;Jian-Kui [20]Liu;Julia [21]Pawlowska;Kadri [1]Põldmaa;Kadri [1]Pärtel;Kadri [1]Runnel;Karen [22]Hansen;Karl-Henrik [3,23]Larsson;Kevin David [24]Hyde;Marcelo Sandoval-[25]Denis;Matthew [26]E.Smith;Merje Toome-[27]Heller;Nalin [28]N.Wijayawardene;Nelson Menolli [29,30]Jr;Nicole [26]K.Reynolds;Rein [31]Drenkhan;Sajeewa [20]S.N.Maharachchikumbura;Tatiana [32]B.Gibertoni;Thomas [33]Læssøe;William [34]Davis;Yuri [35]Tokarev;Adriana [36]Corrales;Adriene Mayra [37]Soares;Ahto [1]Agan;Alexandre Reis [32]Machado;Andrés Argüelles-[38]Moyao;Andrew [39]Detheridge;Angelina de Meiras-[32]Ottoni;Annemieke [40]Verbeken;Arun Kumar [41]Dutta;Bao-Kai [42]Cui;[43]C.K.Pradeep;César [44,45]Marín;Daniel [46]Stanton;Daniyal [1]Gohar;Dhanushka [47]N.Wanasinghe;Eveli [1]Otsing;Farzad [1]Aslani;Gareth [39]W.Griffith;Thorsten [48]H.Lumbsch;Hans-Peter [49,50]Grossart;Hossein [51]Masigol;Ina [52]Timling;Inga [1]Hiiesalu;Jane [1]Oja;John [1]Y.Kupagme;József [53]Geml;Julieta Alvarez-[38]Manjarrez;Kai [1]Ilves;Kaire [54]Loit;Kalev [31]Adamson;Kazuhide [55]Nara;Kati [1]Küngas;Keilor Rojas-[56]Jimenez;Krišs [57]Bitenieks;Laszlo [58,59]Irinyi;[60]LászlóGNagy;Liina [54]Soonvald;Li-Wei [61]Zhou;Lysett [62]Wagner;M.Catherine [63]Aime;[1]MaarjaÖpik;María Isabel [64]Mujica;Martin [1]Metsoja;Martin [65]Ryberg;Martti [1]Vasar;Masao [55]Murata;Matthew [48]PNelsen;Michelle [66]Cleary;Milan [24]C.Samarakoon;Mingkwan [47]Doilom;Mohammad [1,67]Bahram;Niloufar Hagh-[1]Doust;Olesya [1,68]Dulya;Peter [69]Johnston;Petr [11]Kohout;Qian [61]Chen;Qing [24]Tian;Rajasree [70]Nandi;Rasekh [1]Amiri;Rekhani Hansika [24]Perera;Renata dos Santos [32]Chikowski;Renato L.Mendes-[32]Alvarenga;Roberto Garibay-[38]Orijel;Robin [1]Gielen;Rungtiwa [47]Phookamsak;Ruvishika [24]S.Jayawardena;Saleh [1]Rahimlou;Samantha [47]C.Karunarathna;Saowaluck [47]Tibpromma;Shawn [71]P.Brown;Siim-Kaarel [1]Sepp;Sunil [7,72]Mundra;Zhu-Hua [73]Luo;Tanay [74]Bose;Tanel [1]Vahter;Tarquin [67]Netherway;Teng [75]Yang;Tom [76]May;Torda [60]Varga;Wei [77]Li;Victor Rafael Matos [32]Coimbra;Virton Rodrigo Targino de [32]Oliveira;Vitor Xavier de [32]Lima;Vladimir [1]S.Mikryukov;Yongzhong [78]Lu;Yosuke [79]Matsuda;Yumiko [80]Miyamoto;Urmas [1,2]Kõljalg;Leho [1,2]Tedersoo 高影响力作者 机构地区：[1]Institute of Ecology and Earth Sciences,University of Tartu,14A Ravila,50411 Tartu,Estonia;[2]Natural History Museum,University of Tartu,46 Vanemuise Str,51003 Tartu,Estonia;[3]Gothenburg Global Biodiversity Centre,Box 461,40530 Gothenburg,Sweden;[4]Department of Biological and Environmental Sciences,University of Gothenburg,Gothenburg,Sweden;[5]Department of Soil and Environment,Swedish University of Agricultural Sciences,Box 7014,75007 Uppsala,Sweden;[6]Department of Forest Mycology and Plant Pathology,Swedish University of Agricultural Sciences,Box 7026,75007 Uppsala,Sweden;[7]Section for Genetics and Evolutionary Biology(EvoGene),Department of Biosciences,University of Oslo,P.O.Box 1066,Blindern,NO-0316 Oslo,Norway;[8]University of Hawaiʻi at Mānoa,3190 Maile Way,St.John 102,Honolulu,HI,USA;[9]Department of Biology,University of Copenhagen,Universitetsparken 15,2100 CopenhagenØ,Denmark;[10]Purdue University Northwest,Westville,IN 46391,USA;[11]Institute of Microbiology,Czech Academy of Sciences,Videnska 1083,14220 Praha 4,Czech Republic;[12]GLOBE Institute,University of Copenhagen,Øster Farimagsgade 5,KH7.2.32,1353 Copenhagen,Denmark;[13]Dipartimento di Scienze della Vita e Biologia dei Sistemi,Universitàdi Torino,Viale Mattioli 25,10125 Torino,Italy;[14]Department of Organismic and Evolutionary Biology and Farlow Library and Herbarium,Harvard University,22 Divinity Ave,Cambridge,MA 02138,USA;[15]Blaihofstr.42,72074 Tübingen,Germany;[16]SYNLAB Estonia,Veerenni 53a,Tallinn 11313,Estonia;[17]Escuela de Tecnología Médica,Universidad Santo Tomás,Los Carreras 753,Osorno,Chile;[18]Centro de Genómica y Bioinformática,Universidad Mayor,Camino La Pirámide 5750,Huechuraba,Santiago,Chile;[19]Norwegian Institute for Nature Research(NINA),Sognsveien 68,0855 Oslo,Norway;[20]School of Life Science and Technology,University of Electronic Science and Technology of China,Chengdu 611731,People’s Republic of China;[21]Evolutionary Biology,Faculty of Biology,Biological and Chemical Research Centre,University of Warsaw,ul.Zwirki i Wigury 101,02-089 Warsaw,Poland;[22]Department of Botany,Swedish Museum of Natural History,P.O.Box 50007,10405 Stockholm,Sweden;[23]Gothenburg Global Biodiversity Centre,P.O.Box 461,40530 Gothenburg,Sweden;[24]Center of Excellence in Fungal Research,Mae Fah Luang University,Chiang Rai 57100,Thailand;[25]Westerdijk Fungal Biodiversity Institute,Utrecht,The Netherlands;[26]Department of Plant Pathology,University of Florida,Gainesville,FL,USA;[27]Plant Health and Environment Laboratory,Ministry for Primary Industries,Auckland 1140,New Zealand;[28]Center for Yunnan Plateau Biological Resources Protection and Utilisation,Qujing Normal University,Qujing 655011,Yunnan,China;[29]Instituto Federal de Educação,Ciência e Tecnologia de São Paulo(IFSP),Câmpus São Paulo,Rua Pedro Vicente 625,Canindé,São Paulo,SP 01109-010,Brazil;[30]Instituto de Botânica,Núcleo de Pesquisa em Micologia,Av.Miguél Stefano 3687,Água Funda,São Paulo,SP 04301-012,Brazil;[31]Institute of Forestry and Rural Engineering,Estonian University of Life Sciences,Fr.R.Kreutzwaldi 5,51006 Tartu,Estonia;[32]Departamento de Micologia,Universidade Federal de Pernambuco,Avenida da Engenharia,S/N-Cidade Universitária,50740-600 Recife,PE,Brazil;[33]Department of Biology&Globe Institute,University of Copenhagen,Universitetsparken 15,2100 CopenhagenØ,Denmark;[34]ARS Research Participation Program,Oak Ridge Institute for Science and Education,Oak Ridge,TN 37830,USA;[35]All-Russian Institute of Plant Protection,Podbelskogo 3 Pushkin,St Petersburg 196608,Russia;[36]Department of Biology,Universidad del Rosario,Carrera 24#63C-69,Bogota,DC 111221,Colombia;[37]Ciências Biológicas,Universidade Federal Rural da Amazônia,Tomé-Açu,Rodovia PA-451,Km 03,68.680-000,Bairro Açaizal 68.680-000,Brazil;[38]Instituto de Biología,Universidad Nacional Autónoma de México,Mexico City,Mexico;[39]Institute of Biological,Environmental and Rural Sciences,Aberystwyth University,Wales,UK;[40]Research Group Mycology,Department of Biology,Ghent University,Ledeganckstraat 35,9000 Ghent,Belgium;[41]Department of Botany,West Bengal State University,Barasat,North-24-Parganas,West Bengal 700126,India;[42]Institute of Microbiology,School of Ecology and Nature Conservation,Beijing Forestry University,Beijing 100083,China;[43]Jawaharlal Nehru Tropical Botanic Garden&Research Institute(JNTBGRI),Palode,Thiruvananthapuram,Kerala 695562,India;[44]Institute of Agri-food,Animal and Environmental Sciences(ICA3),Universidad de O’Higgins,3070000 San Fernando,Chile;[45]Center of Applied Ecology and Sustainability(CAPES),Pontificia Universidad Católica de Chile,8320000 Santiago,Chile;[46]Department of Ecology,Evolution and Behavior,University of Minnesota-Twin Cities,Saint Paul,MN 55108,USA;[47]CAS Key Laboratory for Plant Diversity and Biogeography of East Asia,Kunming Institute of Botany,Chinese Academy of Sciences,Kunming 650201,Yunnan,China;[48]Science and Education and The Grainger Bioinformatics Center,The Field Museum,1400 S.Lake Shore Dr.,Chicago,IL 60605,USA;[49]Department of Experimental Limnology,Leibniz Institute of Freshwater Ecology and Inland Fisheries,Alte Fischerhuette 2,16775 Stechlin,Germany;[50]Institute of Biochemistry and Biology,Potsdam University,Maulbeerallee 2,14469 Potsdam,Germany;[51]Department of Plant Protection,University of Guilan,Rasht,Iran;[52]Institute of Arctic Biology,University of Alaska,Fairbanks,311 Irving I Building,2140 Koyukuk Drive,PO Box 757000,Fairbanks,AK 99775-7000,USA;[53]MTA-EKE Lendület Environmental Microbiome Research Group,Eszterházy Károly University,Eger,Hungary;[54]Institute of Agricultural and Environmental Sciences,Estonian University of Life Sciences,Tartu,Estonia;[55]Department of Natural Environmental Studies,University of Tokyo,5-1-5 Kashiwanoha,Kashiwa 277-0882,Chiba,Japan;[56]Escuela de Biologia,Universidad de Costa Rica,11501 San Jose,Costa Rica;[57]Genetic Resource Centre,Latvian State Forest Research Institute“Silava”,111 Rigas str,Salaspils LV-2169,Latvia;[58]Sydney Medical School and Westmead Clinical School and Westmead Institute for Medical Research,University of Sydney,Sydney,NSW,Australia;[59]Westmead Hospital,Sydney,NSW,Australia;[60]Biological Research Center Szeged,6726 Szeged,Hungary;[61]State Key Laboratory of Mycology,Institute of Microbiology,Chinese Academy of Sciences,Beijing 100101,China;[62]National Reference Center for Invasive Fungal Infections(NRZMyk),Leibniz Institute forNatural Product Research and Infection Biology-Hans Knöll Institute(HKI),Jena,Germany;[63]Department of Botany and Plant Pathology,Purdue University,West Lafayette,IN 47907,USA;[64]Departamento de Ecología,Pontificia Universidad Católica de Chile,Alameda 340,Santiago,Chile;[65]Department of Organismal Biology,Uppsala University,Uppsala,Sweden;[66]Southern Swedish Forest Research Centre,Swedish University of Agricultural Sciences(SLU),Alnarp,Sweden;[67]Department of Ecology,Swedish University of Agricultural Sciences,Uppsala,Sweden;[68]Institute of Plant and Animal Ecology,Ural Branch,Russian Academy of Sciences,8th MarchStreet 202/3,Ekaterinburg,Russia 620144;[69]Manaaki Whenua-Landcare Research,Private Bag 92170,Auckland 1142,New Zealand;[70]Institute of Forestry and Environmental Sciences,University of Chittagong,Chittagong,Bangladesh;[71]Department of Biological Sciences,University of Memphis,Memphis,TN,USA;[72]Department of Biology,College of Science,United Arab Emirates University,Al-Ain,Abu-Dhabi,UAE;[73]Key Laboratory of Marine Biogenetic Resources,Third Institute of Oceanography,Ministry of Natural Resources,184 Daxue Road,Xiamen 361005,China;[74]Department of Biochemistry,Genetics and Microbiology,Forestry Agricultural Biotechnology Institute(FABI),University of Pretoria,Pretoria,South Africa;[75]State Key Laboratory of Soil and Sustainable Agriculture,Institute of Soil Science,Chinese Academy of Sciences,East Beijing Road 71,Nanjing 210008,China;[76]Royal Botanic Gardens Victoria,Melbourne,VIC 3004,Australia;[77]College of Marine Life Sciences,Ocean University of China,Qingdao 266003,China;[78]School of Food and Pharmaceutical Engineering,Guizhou Institute of Technology,Guiyang 550003,China;[79]Graduate School of Bioresources,Mie University,Mie,Japan;[80]Arctic Research Center,Hokkaido University,Sapporo,Japan高影响力机构 出　　处：《Fungal Diversity》索引2020年第6期,共16页高影响力期刊 基　　金：Estonian Science Foundation grants PSG136,PRG632,PUT1170;the University of Tartu(PLTOM20903);the European Regional Development Fund(Centre of Excellence EcolChange). 摘　　要：The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies.Over the past decades,rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats.Yet,in spite of the progress of molecular methods,knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging.In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels.Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge,we reannotated 10,210 and 151 fungal and Stramenopila genera,respectively.This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera,designed for rapid functional assignments of environmental stud-ies.In order to assign the trait states to fungal species hypotheses,the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences.On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1%dissimilarity threshold. 关 键 词：Fungal traits Trophic modes Function GUILD BIOINFORMATICS High-throughput sequencing Community ecology
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