The evolving species concepts used for yeasts:from phenotypes and genomes to speciation networks

查看全文 作　　者：Teun [1,2]Boekhout;M.Catherine [3]Aime;Dominik [4]Begerow;Toni [5,6,7]Gabaldón;Joseph [8]Heitman;Martin [4]Kemler;Kantarawee [9]Khayhan;Marc-[10]AndréLachance;Edward [11]J.Louis;Sheng [8]Sun;Duong [1]Vu;Andrey [12]Yurkov

机构地区：[1]Westerdijk Fungal Biodiversity Institute,Utrecht,The Netherlands;[2]Institute of Biodiversity and Ecosystem Dynamics(IBED),University of Amsterdam,Amsterdam,The Netherlands;[3]Dept Botany and Plant Pathology,College of Agriculture,Purdue University,West Lafayette,IN 47907,USA;[4]Evolution of Plants and Fungi,Ruhr-University Bochum,44801 Bochum,Germany;[5]Barcelona Supercomputing Centre(BSC-CNS),Jordi Girona,29,08034 Barcelona,Spain;[6]Institute for Research in Biomedicine(IRB Barcelona),The Barcelona Institute of Science and Technology,Baldiri Reixac,10,08028 Barcelona,Spain;[7]Catalan Institution for Research and Advanced Studies(ICREA),Barcelona,Spain;[8]Department of Molecular Genetics and Microbiology,Duke University Medical Center,Durham,NC 27710,USA;[9]Department of Microbiology and Parasitology,Faculty of Medical Sciences,University of Phayao,Phayao 56000,Thailand;[10]Department of Biology,University of Western Ontario,London,ON N6A 5B7,Canada;[11]Department of Genetics and Genome Biology,Genetic Architecture of Complex Traits,University of Leicester,Leicester LE17RH,UK;[12]German Collection of Microorganisms and Cell Cultures,Leibniz Institute DSMZ,Brunswick,Germany

出　　处：《Fungal Diversity》索引2021年第4期,共29页

基　　金：SS and JH were supported by NIH/NIAID R37 MERIT Award AI39115-23;NIH/NIAID R01 Award AI50113-16;and NIH/NIAID R01 Award AI133654-03;EJL was supported by BBSRC Award BB/L022508/1.DB was supported by DFG Award BE 2201/23-1 and BE 2201/28-1.JH is also co-director and fellow of the CIFAR program Fungal Kingdom:Threats&Opportunities.MCA acknowledges USDA Hatch project 1010662. 摘　　要：Here we review how evolving species concepts have been applied to understand yeast diversity.Initially,a phenotypic species concept was utilized taking into consideration morphological aspects of colonies and cells,and growth profiles.Later the biological species concept was added,which applied data from mating experiments.Biophysical measurements of DNA similarity between isolates were an early measure that became more broadly applied with the advent of sequencing technology,leading to a sequence-based species concept using comparisons of parts of the ribosomal DNA.At present phylogenetic species concepts that employ sequence data of rDNA and other genes are universally applied in fungal taxonomy,including yeasts,because various studies revealed a relatively good correlation between the biological species concept and sequence divergence.The application of genome information is becoming increasingly common,and we strongly recommend the use of complete,rather than draft genomes to improve our understanding of species and their genome and genetic dynamics.Complete genomes allow in-depth comparisons on the evolvability of genomes and,consequently,of the species to which they belong.Hybridization seems a relatively common phenomenon and has been observed in all major fungal lineages that contain yeasts.Note that hybrids may greatly differ in their post-hybridization development.Future in-depth studies,initially using some model species or complexes may shift the traditional species concept as isolated clusters of genetically compatible isolates to a cohesive speciation network in which such clusters are interconnected by genetic processes,such as hybridization. 关键词：FUNGI Species concepts Comparative genomics HYBRIDS NOMENCLATURE Taxonomy

相关文献

参考文献（246）
引证文献（1）
耦合文献（0）

参考文献(246)

引证文献(1)

互联网出版许可证新出网证(渝)字10号全国400电话 - 免长途话费

The evolving species concepts used for yeasts:from phenotypes and genomes to speciation networks

参考文献(246)

引证文献(1)

用户提示