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| 1 | Taming the beast:a revised classification of Cortinariaceae based on genomic data显示文摘Family Cortinariaceae currently includes only one genus,Cortinarius,which is the largest Agaricales genus,with thousands of species worldwide.The species are important ectomycorrhizal fungi and form associations with many vascular plant gen-era from tropicals to arctic regions.Genus Cortinarius contains a lot of morphological variation,and its complexity has led many taxonomists to specialize in particular on infrageneric groups.The previous attempts to divide Cortinarius have been shown to be unnatural and the phylogenetic studies done to date have not been able to resolve the higher-level classification of the group above section level.Genomic approaches have revolutionized our view on fungal relationships and provide a way to tackle difficult groups.We used both targeted capture sequencing and shallow whole genome sequencing to produce data and to perform phylogenomic analyses of 75 single-copy genes from 19 species.In addition,a wider 5-locus analysis of 245 species,from the Northern and Southern Hemispheres,was also done.Based on our results,a classification of the family Cortinariaceae into ten genera-Cortinarius,Phlegmacium,Thaxterogaster,Calonarius,Aureonarius,Cystinarius,Volvanarius,Hygronarius,Mystinarius,and Austrocortinarius-is proposed.Seven genera,10 subgenera,and four sec-tions are described as new to science and five subgenera are introduced as new combinations in a new rank.In addition,41 section names and 514 species names are combined in new genera and four lecto-and epitypes designated.The position of Stephanopus in suborder Agaricineae remains to be studied.Targeted capture sequencing is used for the first time in fungal taxonomy in Basidiomycetes.It provides a cost-efficient way to produce-omics data in species-rich groups.The-omics data was produced from fungarium specimens up to 21 years old,demonstrating the value of museum specimens in the study of the fungal tree of life.This study is the first family revision in Agaricales based on genomics data and hopefully many others will soon follow. | Kare Liimatainen Jan T.Kim Lisa Pokorny Paul M.Kirk Bryn Dentinger Tuula Niskanen | 2022 | Fungal Diversity2022，，1： | 4 |
| 2 | Multidimensional synthetic chiral-tube lattices via nonlinear frequency conversion显示文摘Geometrical dimensionality plays a fundamentally important role in the topological effects arising in discrete lattices.Although direct experiments are limited by three spatial dimensions,the research topic of synthetic dimensions implemented by the frequency degree of freedom in photonics is rapidly advancing.The manipulation of light in these artificial lattices is typically realized through electro-optic modulation;yet,their operating bandwidth imposes practical constraints on the range of interactions between different frequency components.Here we propose and experimentally realize all-optical synthetic dimensions involving specially tailored simultaneous short-and long-range interactions between discrete spectral lines mediated by frequency conversion in a nonlinear waveguide.We realize triangular chiral-tube lattices in three-dimensional space and explore their four-dimensional generalization.We implement a synthetic gauge field with nonzero magnetic flux and observe the associated multidimensional dynamics of frequency combs,all within one physical spatial port.We anticipate that our method will provide a new means for the fundamental study of high-dimensional physics and act as an important step towards using topological effects in optical devices operating in the time and frequency domains. | Kai Wang Bryn A.Bell Alexander S.Solntsev Dragomir N.Neshev Benjamin J.Eggleton Andrey A.Sukhorukov | 2020 | Light(Science & Applications)2020，9，1： | 3 |
| 3 | Review of laser diagnostics at the Vulcan laser facility显示文摘In this paper we review the provision of the laser diagnostics that are installed on the Vulcan laser facility. We will present strategies for dealing with the energy of high energy systems and with ways of handling the beam sizes of the lasers. We present data captured during typical experimental campaigns to demonstrate their reliability and variation in shot to shot values. | Ian Musgrave Marco Galimberti Alexis Boyle Cristina Hernandez-Gomez Andrew Kidd Bryn Parry Dave Pepler Trevor Winstone John Collier | 2015 | High Power Laser Science and Engineering2015，3，3： | 3 |
| 4 | Encyclopedia of Autographa californica Nucleopolyhedrovirus Genes显示文摘The Autographa californica multiple capsid nucleopolyhedrovirus (AcMNPV) was the first baculovirus for which the complete nucleotide sequence became known. Since then 15 years lapsed and much research has been performed to elucidate putative functions of the annotated open reading frames of this virus and this endeavour is still ongoing. AcMNPV is the most well-known and well-studied baculovirus species, not in the least for its application as a vector for the high-level expression of foreign genes in insect cells. This article is the first monograph of a single baculovirus and gives a current overview of what is known about the 151 AcMNPV ORFs, including (putative) function and temporal and spatial presence of transcripts and protein. To date 60 ORFs have a proven function, another 19 ORFs have homologs for which functions are known in other baculoviruses and 72 ORFs are still enigmatic. This paper should assist the reader in quickly finding the essentials of AcMNPV. | David P. A. Cohen Martin Marek Bryn G. Davies Just M. Vlak Monique M. van Oers | 2009 | Virologica Sinica2009，24，5： | 2 |
| 5 | Isoflavones,lignans and stilbenes -origins,metabolism and potential importance to human health显示文摘 | Aedin Cassidy Bryn Hanley Rose M Lamuela-Raventos | 2000 | Journal of the Science of Food and Agriculture2000，80，： | 1 |
| 6 | Natural products from en- dophytic microorganisms显示文摘 | Gary S Bryn D UvidelioC | 2004 | journal of Natural Products2004，67，： | 1 |
| 7 | Sustainable energy and urban form in China: the relevance of community energy management显示文摘 | Bryn Sadownik Mark Jaccard | 2000 | Energy Policy2000，，1： | 1 |
| 8 | Sohd-phase sediment toxicity identification evaluation in an agricultural stream显示文摘 | Bryn M Philips Brian S Anderson John W Hunt | 2006 | Environmental Toxicology and Chemistry2006，25，6： | 1 |
| 9 | Approach and landing risk awareness ALAR显示文摘 | Shaw L Bryn | 2009 | Flight Safety Foundation2009，6，5： | 1 |
| 10 | A novel galectin-like domain from Toxoplasma gondii micronemal pro- tein 1 assists the folding, assembly, and transport of a cell adhe- sion complex 显示文摘 | Savvas saouros Bryn edward-jones Matthias reiss | 2005 | The Journal of Biological Chemistry2005，280，38： | 1 |
| 11 | Differential gene expression and genomic patient stratification following left ventricular assist device support显示文摘 | Bums CB Bryn MT Canto AM | 2003 | J Am Coll Cardiol2003，41，6： | 1 |
| 12 | Orthogo- nal frequency-division multiplexing in wireless communi- cation systems with multimode fiber feeds 显示文摘 | Bryn J Dixon Roger D Pollard Stavros lezekiel | 2001 | IEEE Transactions on Microwave Theory and Techniques2001，49，8： | 1 |
| 13 | A double gas-hydrate related bottom simulating reflector at the Norwegian continental margin 显示文摘 | Andreassen K Mienert J Bryn P | 2000 | The Annals of the New York Acad of Sci2000，912，： | 1 |
| 14 | Isoflavones,lignans and stilbenes-origins,metabolism and potential impo rtance to human health显示文摘 | Aedin Cassidy Bryn Hanley Rosa M | 2000 | J Sci Food Agric2000，80，： | 1 |
| 15 | Shaping sustainable energy use in Chinese cities: the relevance of community en- ergy management显示文摘 | Bryn Sadownik Mark Jaccard | 2002 | DISP 1512002，26，4： | 1 |
| 16 | Differentiation of naive CD4^+ T cells into CD25^ + FOXP3^ + regulatory T cells by continuous antigen stimulation 显示文摘 | Mahic M Yaqub S Bryn T | 2008 | Leukoc Biol2008，83，5： | 1 |
| 17 | Natural products from endophytic microorganisms 显示文摘 | Gary S Bryn D Uvidelio C | 2004 | J Nat Prod2004，67，： | 1 |
| 18 | Physiological and biochemical role of the butanediol pathway in Aerobacter(En-terobacter)aerogenes显示文摘 | Johansen L Bryn K Stormer F C | 1975 | J Bacteriol1975，123，3： | 1 |
| 19 | Ormen Lange: An integratedstudy for the safe development of a deep-water gas field within theStoregga Slide complex, NE Atlantic continental margin: Executivesummary 显示文摘 | Solheim A Bryn P Sejrup H P | 2005 | Marine and Petroleum Geology2005，22，： | 1 |
| 20 | Bioprospecting for microbial endophytes and their natural products显示文摘 | Bryn Daisy | 2003 | Microbiology and Biology Revews2003，12，： | 1 |
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