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| 1 | Microbial diversity in Huguangyan Maar Lake of China revealed by high-throughput sequencing显示文摘Huguangyan Maar Lake is a typical maar lake in the southeast of China. It is well preserved and not disturbed by anthropogenic activities. In this study, microbial community structures in sediment and water samples from Huguangyan Maar Lake were investigated using a high-throughput sequencing method. We found significant differences between the microbial community compositions of the water and the sediment. The sediment samples contained more diverse Bacteria and Archaea than did the water samples. Actinobacteria, Betaproteobacteria, Cyanobacteria, and Deltaproteobacteria predominated in the water samples while Deltaproteobacteria, Anaerolineae, Nitrospira, and Dehalococcoidia were the major bacterial groups in the sediment. As for Archaea, Woesearchaeota (DHVEG-6), unclassified Archaea, and Deep Sea Euryarchaeotic Group were detected at higher abundances in the water, whereas the Miscellaneous Crenarchaeotic Group, Thermoplasmata, and Methanomicrobia were significantly more abundant in the sediment. Interactions between Bacteria and Archaea were common in both the water column and the sediment. The concentrations of major nutrients (NO^3-, PO4^3-, SiO3^2- and NH4^+) shaped the microbial population structures in the water. At the higher phylogenetic levels including phylum and class, many of the dominant groups were those that were also abundant in other lakes;however, novel microbial populations (unclassified) were often seen at the lower phylogenetic levels. Our study lays a foundation for examining microbial biogeochemical cycling in sequestered lakes or reservoirs. | HOU Qinghua FANG Zhou ZHU Qingmei DONG Hongpo | 2019 | Journal of Oceanology and Limnology2019，37，4： | 4 |
| 2 | Proteomics of a toxic dinoflagellate Alexandrium catenella DH01:Detection and identification of cell surface proteins using fluorescent labeling显示文摘Alexandrium catenella DH01 is a toxic dinoflagellate species that is able to not only produce paralytic shellfish toxins,but also cause harmful algal blooms along the coast of China.In this study,we presented a new protocol for specific labeling and detection of the cell surface proteins(CSPs) of A.catenella DH01 cells using CyDye difference gel electrophoresis(DIGE) fluor minimal dyes.CSPs were identified using two-dimensional gel electrophoresis(2-DE) and MALDI TOF-TOF mass spectrometry(MS).The results showed that the fluorescent cyanine dye Cy3 could specifically label the CSPs of A.catenella DH01,with minimal labeling of intracellular proteins.Among three protein extraction methods evaluated,the Trizol method was the most efficient to extract CSPs with respect to protein spot number and resolution.Forty-one CSPs were separated and identified from A.catenella DH01 by 2-DE,in which 14 were identified in the protein database using MALDI TOF-TOF MS analysis.This work represents the first attempt to investigate the CSPs of A.catenella using the CyDye DIGE fluor dyeing method that provides a potentially important tool for future comprehensive characterization of CSPs and elucidation of the physiological functions of CSPs in dinoflagellates. | LI Cheng WANG DaZhi DONG HongPo XIE ZhangXian HONG HuaSheng | 2012 | Chinese Science Bulletin2012，57，25： | 3 |
| 3 | In situ nitrogen removal processes in intertidal wetlands of the Yangtze Estuary显示文摘Estuarine and intertidal wetlands are important sites for nitrogen transformation and elimination.However,the factors controlling nitrogen removal processes remain largely uncertain in the highly dynamic environments.In this study,continuous-flow experiment combined with 15 N isotope pairing technique was used to investigate in situ rates of denitrification and anaerobic ammonium oxidation(anammox)and their coupling with nitrification in intertidal wetlands of the Yangtze Estuary.The measured rates varied from below the detection limit to 152.39μmol N/(m^2·hr)for denitrification and from below the detection limit to 43.06μmol N/(m^2·hr)for anammox.The coupling links of nitrogen removal processes with nitrification were mainly dependent on nitrate,organic carbon,sulfide,dissolved oxygen and ferric iron in the estuarine and intertidal wetlands.Additionally,it was estimated that the actual nitrogen removal processes annually removed approximately 5%of the terrigenous inorganic nitrogen discharged into the Yangtze Estuary.This study gives new insights into nitrogen transformation and fate in the estuarine and intertidal wetlands. | Cheng Liu Lijun Hou Min Liu Yanling Zheng Guoyu Yin Hongpo Dong Xia Liang Xiaofei Li Dengzhou Gao Zongxiao Zhang | 2020 | Journal of Environmental Sciences2020，32，7： | 2 |
| 4 | Invasive Spartina alterniflora accelerates the increase in microbial nitrogen fixation over nitrogen removal in coastal wetlands of China显示文摘Salt marsh plants play a vital role in mediating nitrogen(N)biogeochemical cycle in estuarine and coastal ecosystems.However,the effects of invasive Spartina alterniflora on N fixation and removal,as well as how these two processes balance to determine the N budget,remain unclear.Here,simultaneous quantifications of N fixation and removal via^(15)N tracing experiment with native Phragmites australis,invasive S.alterniflora,and bare flats as well as corresponding functional gene abundance by qPCR were carried out to explore the response of N dynamics to S.alterniflora invasion.Our results showed that N fixation and removal rates ranged from 0.77±0.08 to 16.12±1.13 nmol/(g·h)and from 1.42±0.14 to 16.35±1.10 nmol/(g·h),respectively,and invasive S.alterniflora generally facilitated the two processes rates.Based on the difference between N removal and fixation rates,net N_(2)fluxes were estimated in the range of-0.39±0.14 to 8.24±2.23 nmol/(g·h).Estimated net N_(2)fluxes in S.alterniflora stands were lower than those in bare flats and P.australis stands,indicating that the increase in N removal caused by S.alterniflora invasion may be more than offset by N fixation process.Random forest analysis revealed that functional microorganisms were the most important factor associated with the corresponding N transformation process.Overall,our results highlight the importance of N fixation in evaluating N budget of estuarine and coastal wetlands,providing valuable insights into the ecological effect of S.alterniflora invasion. | Shuntao Chen Dengzhou Gao Xiaofei Li Yuhui Niu Cheng Liu Dongyao Sun Yanling Zheng Hongpo Dong Xia Liang Guoyu Yin Xianbiao Lin Min Liu Lijun Hou | 2023 | Eco-Environment & Health2023，2，3： | 0 |
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