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| 1 | A draft sequence of the rice (Oryza sativa ssp. indica) genome显示文摘The sequence of the rice genome holds fundamental information for its biology, including physiology, genetics, development, and evolution, as well as information on many beneficial phenotypes of economic significance. Using a 'whole genome shotgun' approach, we have pro-duced a draft rice genome sequence of Oryza sativa ssp. in-dica, the major crop rice subspecies in China and many other regions of Asia. The draft genome sequence is constructed from over 4.3 million successful sequencing traces with an accumulative total length of 2214.9 Mb. The initial assembly of the non-redundant sequences reached 409.76 Mb in length, based on 3.30 million successful sequencing traces with a total length of 1797.4 Mb from an indica variant cultivar 93-11, giving an estimated coverage of 95.29% of the rice genome with an average base accuracy of higher than 99%. The coverage of the draft sequence, the randomness of the sequence distribution, and the consistency of BIG-ASSEM-BLER, a custom-designed software package | YU Jun, HU Songnian, WANG Jun,LI Songgang WONG Ka-Shu Gane, LIU Bin,DENG Yajun, DAI Li, ZHOU Yan,ZHANG Xiuqing, CAO Mengliang, LIU Jing,SUN Jiandong , TANG Jiabin, CHEN Yanjiong,HUANG Xiaobing, LIN Wei, YE Chen, TONG Wei,CONG Lijuan, GENG Jianing, HAN Yujun, LI Lin,LI Wei, HU Guangqiang, HUANG Xiangang,LI Wenjie, LI Jian, LIU Zhanwei, LI Long,LIU Jianping, Ql Qiuhui, LIU Jinsong, LI Li,WANG Xuegang, LU Hong, WU Tingling,ZHU Miao, Nl Peixiang, HAN Hua, DONG Wei,REN Xiaoyu, FENG Xiaoli, GUI Peng,LI Xianran, WANG Hao, XU Xin, ZHAI Wenxue,XU Zhao, ZHANG Jinsong, HE Sijie,ZHANG Jianguo, XU Jichen, ZHANG Kunlin,ZHENG Xianwu, DONG Jianhai, ZENG Wanyong,TAO Lin, CHEN Xuewei, HE Jun, LIU Daofeng,TIAN Wei, TIAN Chaoguang, XIA Hongai,LI Gang, GAO Hui, LI Ping, CHEN Wei ,WANG Xudong, ZHANG Yong, HU Jianfei,WANG Jing, LIU Song, YANG Jian,ZHANG Guangyu, XIONG Yuqing, LI Zhijie,MAO Long, ZHOU Chengshu, ZHU Zhen,CHEN Runsheng, HAO Bailin,ZHENG Weimou, CHEN Shouyi, QUO Wei,LI Guojie, LIU Siqi, HUANG Guyang,TAO Ming, WANG Jian, ZHU Lihuang,YUAN Longping& YANG HuanmingBeijing Genomics Institute/Center of Genomics & Bioinformatics, Chinese Academy of Sciences, Beijing 101300, China Hangzhou Genomics Institute/Institute of Bioinformatics of Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China Institute of Genetics, Chinese Academy of Sciences, Beijing 100101, China National Hybrid Rice R & D Center, Changsha 410125, China Laboratory of Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China College of Life Sciences, Peking University, Beijing 100871, China Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 1Q0080, China Digital China Ltd., Beijing 100080, China Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China Medical College, Xi’an Jiaotong University, Xi’an 710061, ChinaThese authors contributed equally to this work.Corresponding author.Corresponden | 2001 | Chinese Science Bulletin2001，46，23： | 6 |
| 2 | Petrogenesis of the Langdu High-K Calc-Alkaline Intrusions in Yunnan Province: Constraints from Geochemistry and Sr-Nd Isotopes显示文摘The Langdu high-K calc-alkaline intrusions are located in the Zhongdian area, which is the southern part of the Yidun island arc. These intrusive rocks consist mainly of monzonite porphyry, granodiorite, and diorite porphyry. The K2O content of majority of these rocks is greater than 3%, and, in the K2O-SiO2 diagram, all the samples fall into the high-K calc-alkaline to shoshonitic fields. They are enriched in light rare earth elements (LREEs) and depleted in heavy rare earth elements (HREEs; LaN/YbN = 14.3-21.2), and show slightly negative Eu anomalies (δEu = 0.77-1.00). These rocks have high K, Rb, Sr, and Ba contents; moderate to high enrichment of compatible elements (Cr = 36.7-79.9 ppm, Co = 9.6-16.4 ppm, and MgO = 2.2%-3.4%); low Nb, Ta, and Ti contents, and characteristic of low high field strength elements(HFSEs) versus incompatible elements ratios (Nb/Th = 0.75, Nb/La = 0.34) and incompatible elements ratios (Nb/U = 3.0 and Ce/Pb = 5.1, Ba/Rb = 12.0). These rocks exhibit restricted Sr and Nd isotopic compositions, with (87Sr/86Sr) i values ranging from 0.7044 to 0.7069 and εNd(t) values from -2.8 to -2.2. The Sr-Nd isotope systematic and specific trace element ratios suggest that Langdu high-K calc-alkaline intrusive rocks derived from a metasomatized mantle source. The unique geochemical feature of intrusive rocks can be modeled successfully using different members of a slightly enriched mantle, a slab-derived fluid, and terrigenous sediments. It can be inferred that the degree of partial melting and the presence of specific components are temporally related to the tectonic evolution of the Zhongdian island arc. Formation of these rocks can be explained by the various degrees of melting within an ascending region of the slightly enriched mantle, triggered by the subduction of the Garzê-Litang ocean, and an interaction between the slab-derived fluid and the terrigenous sediments. | REN Tao ZHANG Xingchun HAN Runsheng MA Meijuan | 2013 | Acta Geologica Sinica(English Edition)2013，87，2： | 3 |
| 3 | Geochemical Characteristics of the Tayuan Volcanic Rocks in the Daxinganling Metallogenic Belt显示文摘1 Introduction Daxinganling region is one of the most important nonferrous metal metallogenetic province(Wu et al.,2011;Li et al.,2014).The northern Daxinganling was a geological blank area in China formerly(Li et al.,2017).However,the region has a huge resource potential.Forty metal deposits have been found in the area recently。 | LI Chao Ren Tao HUANG Jianguo HAN Runsheng ZHOU Hongyang FENG Zhihong | 2017 | Acta Geologica Sinica(English Edition)2017，91，S1： | 1 |
| 4 | Andesite geochemistry features of late triassic tumugou formation, in Zhongdian, Yunnan Province 显示文摘 | Huang Jianguo Han Runsheng Tao Ren | 2012 | Advanced Materials Research2012，，： | 1 |
| 5 | Carbon–oxygen isotopic covariations of calcite from Langdu skarn copper deposit, China: implications for sulfide precipitation显示文摘The Langdu skarn copper deposit in the Zhongdian area, Yunnan Province, China, has an average Cu grade of 6.49 %. The deposit is related to a porphyry intrusion(*216 Ma), which was emplaced in the Upper Triassic sedimentary rocks of the Tumugou and Qugasi Formations.At the Langdu skarn copper deposit, carbon and oxygen isotope ratios of fresh limestones(d18O = 3.0–5.6 % relative to V-SMOW; d13 C = 24.5–25.7 % relative to PDB)and partly altered limestones(d18O = 27–7.2 to-1.9 %;d13C = 11.8–15.2 %) indicated that the deposit was a typical marine carbonate source. Oxygen and carbon isotope values for calcites formed at different hydrothermal stages are-9.1 to 0.2 and 10.1–16.3 %, respectively. Moreover,the carbon–oxygen isotopic composition of an ore-forming fluid(d18O = 5.0–9.5 %, d13 C =-7.3 to-5.3 %) suggested the presence of magmatic water, which most likely came from the differentiation or melting of a homologous magma chamber. The deposition of Calcite I may arise from metasomatism in an open system with a progressively decreasing temperature.Later, the minerals chalcopyrite, pyrrhotite, quartz and Calcite II were precipitated due to immiscibility. Water–rock interaction could potentially be responsible for Calcite III precipitation in the post-ore stage. | Tao Ren Xingchun Zhang Runsheng Han Baohong Hou | 2015 | Chinese Journal Of Geochemistry2015，34，1： | 1 |
| 6 | Genome-wide identification and characterization of thaumatin-like protein family genes in wheat and analysis of their responses to Fusarium head blight infection显示文摘Thaumatin-like proteins (TLPs) play potential roles in plant resistance to various diseases. Identifying TLPs is neces-sary to determine their function and apply them to plant disease resistance. However, limited information is available about TLP-family genes in wheat, especially regarding their responses to Fusarium species, which cause Fusarium head blight in wheat. In this study, we conducted a comprehensive genome-wide survey of TLP genes in wheat and identified 129 TLP genes in the wheat genome, which were unevenly distributed on 21 wheat chromosomes, with 5A containing the highest number. Phylogenetic analysis showed that these 129 wheat TLP genes together with 24 Arabidopsis TLPs were classified into 7 groups based on the protein sequences. We systematically analyzed the genes in terms of their sequence characterization, chromosomal locations, exon-intron distribution, duplication (tandem and segmental) events and expression profiles in response to Fusarium infection. Furthermore, we analyzed differen-tially expressed TLP genes based on publicly available RNA-seq data obtained from a resistant near isogenic wheat line at different time points after Fusarium graminearum inoculation. Then, the expression of 9 differentially expressed TLP genes was confirmed by real-time PCR, and these 9 genes were all upregulated in the resistant Sumai 3 variety, which was generally consistent with the RNA-seq data. Our results provide a basis for selecting candidate wheat TLP genes for further studies to determine the biological functions of the TLP genes in wheat. | Runsheng Ren Xinli Zhou Xu Zhang Xin Li Pingping Zhang Yi He | 2022 | Food Production, Processing and Nutrition2022，4，1： | 0 |
| 7 | A strong physical unclonable function with machine learning immunity for Internet of Things application显示文摘The physical unclonable functions(PUFs) are novel cryptographic primitives in modern hardware security systems.Compared with traditional alternatives based on digital keys and non-volatile memory(NVM),the PUF system shows great unclonability,high efficiency,and physical attack resilience.However,the conventional PUF design suffers from weak machine learning immunity,high storage overhead,and unreliability,making it difficult to implement in the Internet of Things(Io T) and edge computing applications.This paper presents a new PUF design that could solve the proposed obstacles.By utilizing the emission probability of traps commonly found in nano-scaled transistors,a model-based PUF system with strong machine learning resistance could be achieved.This PUF design,called Prob-PUF,needs fewer challengeresponse pairs(CRPs) space and reveals superior resistance to modeling attacks due to the mixture of stable/random bits in its output response.Moreover,the Prob-PUF system could reach a high level of uniqueness and robustness,making it a potential candidate for future cryptographically secured protocols within the IoT. | Pengpeng REN Yongkang XUE Linglin JING Lining ZHANG Runsheng WANG Zhigang JI | 2024 | Science China(Information Sciences)2024，67，1： | 0 |
| 8 | HREELS study on coadsorption of oxygen and cyclohexanone on the Pt(111) surface显示文摘The coadsorption of cyclohexanone and oxygen on Pt(111) has been investigated by HREELS and TDS. At 205 K the presence of oxygen induces an 'extra' red\|shift of the C--O stretching of coadsorbed cyclohexanone. Heating this coadsorbed surface from 205 to 250 K leads to further dehydrogenation to form intermediate species and to complete disappearance of the C--O stretching band. Above 300 K, the molecule rings of dehydrogenation species cleave to form hydrocarbon fragments and CO molecules which directly desorb into the vacuum or react with preadsorbed oxygen to produce CO\-2 which leave the surface immediately. TDS results provide further evidence that the preadsorbed oxygen promotes the decomposition of cyclohexanone. | Yingsheng Wang Xuming Wei Suzhen Ren Runsheng Zhai Yukun Zhao Xianfeng Wang Suxian Zhuang | 1998 | Chinese Science Bulletin1998，43，15： | 0 |
| 9 | Ore-controlling Regularities of Thrust-fold structures and features of Tectono-geochemical Anomalies at the Xiaozhuqing Exploration Area in the Huize Zn-Pb District显示文摘1 Introduction The huize Zn-Pb ore district in Yunnan province is locatedinthecentralsouthernofthe Sichuan—Yunnan—GuizhouPb-ZnPoly-metallic Mineralization Area in the southwestern margin of the Yangtze Block,and is strictly controlled by fault structures.It has developed to one of the famous production bases of lead&zinc and germanium in China. | Gong Hongsheng Han Runsheng Li Ziteng Ren Tao Wang Jiasheng | 2017 | Acta Geologica Sinica(English Edition)2017，91，S1： | 0 |
| 10 | Geochemical Characteristics and Ore-Forming Environment in the Qujiashan Manganese Deposit, Shaanxi显示文摘1 Introduction The Qujiashan manganese deposit is located in the northeastern margin of the Yangtze Block.It is an important part of Qinba area,which is one of the nine manganese ore prospecting area(Luo,2002). | WANG Ziyong HAN Runsheng REN Tao | 2017 | Acta Geologica Sinica(English Edition)2017，91，S1： | 0 |
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