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| 1 | Inulin Can Alleviate Metabolism Disorders in ob/ob Mice by Partially Restoring Leptinrelated Pathways Mediated by Gut Microbiota显示文摘Inulin has been used as a prebiotic to alleviate glucose and lipid metabolism disorders in mice and humans by modulating the gut microbiota. However, the mechanism underlying the alleviation of metabolic disorders by inulin through interactions between the gut microbiota and host cells is unclear. We use ob/ob mice as a model to study the effect of inulin on the cecal microbiota by16 S rRNA gene amplicon sequencing and its interaction with host cells by transcriptomics. The inulin-supplemented diet improved glucose and lipid metabolism disorder parameters in ob/ob mice,alleviating fat accumulation and glucose intolerance. The a diversity of gut microbial community of ob/ob mice was reduced after inulin treatment, while the b diversity tended to return to the level of wild type mice. Interestingly, Prevotellaceae UCG 001(family Prevotellaceae) was obviously enriched after inulin treatment. A comparative analysis of the gene expression profile showed that the cecal transcriptome was changed in leptin gene deficiency mice, whereas the inulin-supplemented diet partially reversed the changes in leptin gene-related signaling pathways, especially AMPK signaling pathway, where the levels of gene expression became comparable to those in wild type mice.Further analysis indicated that Prevotellaceae UCG 001 was positively correlated with the AMPK signaling pathway, which was negatively correlated with markers of glycolipid metabolism disorders. Our results suggest that the inulin-supplemented diet alleviates glucose and lipid metabolism disorders by partially restoring leptin related pathways mediated by gut microbiota. | Xiaofeng Song Liang Zhong Na Lyu Fei Liu Boxing Li Yanan Hao Yong Xue Jing Li Yuqing Feng Yue Ma Yongfei Hu Baoli Zhu | 2019 | Genomics, Proteomics & Bioinformatics2019，17，1： | 12 |
| 2 | A draft sequence of the rice (Oryza sativa ssp. indica) genome显示文摘The sequence of the rice genome holds fundamental information for its biology, including physiology, genetics, development, and evolution, as well as information on many beneficial phenotypes of economic significance. Using a 'whole genome shotgun' approach, we have pro-duced a draft rice genome sequence of Oryza sativa ssp. in-dica, the major crop rice subspecies in China and many other regions of Asia. The draft genome sequence is constructed from over 4.3 million successful sequencing traces with an accumulative total length of 2214.9 Mb. The initial assembly of the non-redundant sequences reached 409.76 Mb in length, based on 3.30 million successful sequencing traces with a total length of 1797.4 Mb from an indica variant cultivar 93-11, giving an estimated coverage of 95.29% of the rice genome with an average base accuracy of higher than 99%. The coverage of the draft sequence, the randomness of the sequence distribution, and the consistency of BIG-ASSEM-BLER, a custom-designed software package | YU Jun, HU Songnian, WANG Jun,LI Songgang WONG Ka-Shu Gane, LIU Bin,DENG Yajun, DAI Li, ZHOU Yan,ZHANG Xiuqing, CAO Mengliang, LIU Jing,SUN Jiandong , TANG Jiabin, CHEN Yanjiong,HUANG Xiaobing, LIN Wei, YE Chen, TONG Wei,CONG Lijuan, GENG Jianing, HAN Yujun, LI Lin,LI Wei, HU Guangqiang, HUANG Xiangang,LI Wenjie, LI Jian, LIU Zhanwei, LI Long,LIU Jianping, Ql Qiuhui, LIU Jinsong, LI Li,WANG Xuegang, LU Hong, WU Tingling,ZHU Miao, Nl Peixiang, HAN Hua, DONG Wei,REN Xiaoyu, FENG Xiaoli, GUI Peng,LI Xianran, WANG Hao, XU Xin, ZHAI Wenxue,XU Zhao, ZHANG Jinsong, HE Sijie,ZHANG Jianguo, XU Jichen, ZHANG Kunlin,ZHENG Xianwu, DONG Jianhai, ZENG Wanyong,TAO Lin, CHEN Xuewei, HE Jun, LIU Daofeng,TIAN Wei, TIAN Chaoguang, XIA Hongai,LI Gang, GAO Hui, LI Ping, CHEN Wei ,WANG Xudong, ZHANG Yong, HU Jianfei,WANG Jing, LIU Song, YANG Jian,ZHANG Guangyu, XIONG Yuqing, LI Zhijie,MAO Long, ZHOU Chengshu, ZHU Zhen,CHEN Runsheng, HAO Bailin,ZHENG Weimou, CHEN Shouyi, QUO Wei,LI Guojie, LIU Siqi, HUANG Guyang,TAO Ming, WANG Jian, ZHU Lihuang,YUAN Longping& YANG HuanmingBeijing Genomics Institute/Center of Genomics & Bioinformatics, Chinese Academy of Sciences, Beijing 101300, China Hangzhou Genomics Institute/Institute of Bioinformatics of Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China Institute of Genetics, Chinese Academy of Sciences, Beijing 100101, China National Hybrid Rice R & D Center, Changsha 410125, China Laboratory of Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China College of Life Sciences, Peking University, Beijing 100871, China Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 1Q0080, China Digital China Ltd., Beijing 100080, China Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China Medical College, Xi’an Jiaotong University, Xi’an 710061, ChinaThese authors contributed equally to this work.Corresponding author.Corresponden | 2001 | Chinese Science Bulletin2001，46，23： | 6 |
| 3 | Expert consensus on early childhood caries management显示文摘Early childhood caries(ECC)is a significant chronic disease of childhood and a rising public health burden worldwide.ECC may cause a higher risk of new caries lesions in both primary and permanent dentition,affecting lifelong oral health.The occurrence of ECC has been closely related to the core microbiome change in the oral cavity,which may be influenced by diet habits,oral health management,fluoride use,and dental manipulations.So,it is essential to improve parental oral health and awareness of health care,to establish a dental home at the early stage of childhood,and make an individualized caries management plan.Dental interventions according to the minimally invasive concept should be carried out to treat dental caries.This expert consensus mainly discusses the etiology of ECC,caries-risk assessment of children,prevention and treatment plan of ECC,aiming to achieve lifelong oral health. | Jing Zou Qin Du Lihong Ge Jun Wang Xiaojing Wang Yuqing Li Guangtai Song Wei Zhao Xu Chen Beizhan Jiang Yufeng Mei Yang Huang Shuli Deng Hongmei Zhang Yanhong Li Xuedong Zhou | 2022 | International Journal of Oral Science2022，14，3： | 5 |
| 4 | Benthic Habitat Quality Assessment Based on Biological Indices in Xiaoqing River Estuary and Its Adjacent Sea of Laizhou Bay,China显示文摘Based on the macrofauna data(2008-2011) in Xiaoqing River estuary and its adjacent sea, Laizhou Bay of Bohai Sea, China, the AZTI Marine Biotic Index(AMBI) and Multivariate AMBI(M-AMBI) were used for benthic habitat quality(BHQ) assessment. Results showed that BHQ presented an obvious trend of improvement along the direction of stream channel and river mouth, and in the coastal areas. AMBI and M-AMBI were significantly related to environmental pressure gradient data. Therefore, the two indices can well indicate BHQ in the studied area. However, there were significant differences between results of the two indices. In the cases of low taxa number and high abundance of single species, AMBI might overestimate BHQ. We thus adjusted its thresholds to solve this problem. And M-AMBI might overestimate BHQ when benthic assemblage was dominated by the opportunistic species. Then we could raise the weight of AMBI in the calculation of M-AMBI to handle the problem. | LUO Xianxiang LIN Song YANG Jianqiang SHEN Jiayu FAN Yuqing ZHANG Longjun | 2017 | Journal of Ocean University of China2017，16，3： | 3 |
| 5 | Preliminary Theoretical Studies on the Combination of Halogen Ions with Crown Tetraalanylpeptide显示文摘 | Hongtao Song Guoping Liu Yuqing Yang Hui Gao Hongyuan Wei Shunzhong Luo | 2010 | Journal of Chemistry and Chemical Engineering2010，4，4： | 3 |
| 6 | Effects of complement inhibition on the ABC phenomenon in rats显示文摘Researchers reported that intravenously injected PEGylated colloidal drug carriers lose their long-circulating characteristic and accumulated extensively in liver when they are administrated twice in the same animal with certain intervals. This phenomenon was referred to as the 'accelerated blood clearance(ABC) phenomenon'. Some former studies had found that complement-mediated phagocytosis, activated by antigen–antibody complex, was responsible for inducing the phenomenon. According to the theory, we have used cobra venom factor to deplete complement in vivo and to investigate the effect of complement inhibition on the ABC phenomenon. Rats were administered by injection of cobra venom factor solution to build up the model of complement exhaustion/inhibition, and the effect of the inhibition of complement on ABC phenomenon was carried out. It seemed that inhibition of complement didn’t affect the pharmacokinetic of the first infection. By contrast, in rats of which complement had been depleted, the second dose of PEGylated nanoemulsions showed enhanced circulation time compared with normal rats in a complement inhibition-independent manner, but the ABC phenomenon was not completely eliminated. It indicated that complement inhibition could certainly weaken the accelerated clearance;meanwhile, there were other factors causing the ABC effect.These findings provide novel insights into the attenuating of ABC phenomenon and lay foundation for further study of immune mechanism. | Lirong Wang Yuqing Su Xuling Wang Kaifan Liang Mengyang Liu Wenya Tang Yanzhi Song Xinrong Liu Yihui Deng | 2017 | Asian Journal of Pharmaceutical Sciences2017，12，3： | 2 |
| 7 | Multimarker Detection of MAGE-1,MAGE-3 and AFP mRNAs by a Real-time Quantitative PCR Assay:a Possible Predictor of Hematogenous Micrometastasis of Hepatocellular Carcinoma显示文摘OBJECTIVE To explore the relationship between multimarker detection of MAGE-1,MAGE-3 and AFP mRNAs in the peripheral blood of patients with hepatocellular carcinoma and micrometastasis using a realtime quantitative-PCR(real-time Q-PCR)assay. METHODS Peripheral blood samples were obtained from control subjects and 86 patients with hepatocellular carcinoma (HCC).Real-time Q-PCR was used to detect MAGE-1,MAGE-3, and AFP mRNAs in the blood cells. RESULTS In 86 tumor specimens,the positivity for MAGE-1, MAGE-3,and AFP genes was respectively 34.9%(30/86),60.5% (52/86)and 69.8%(60/86).All specimens expressed at least one marker.MAGE-1,MAGE-3,and AFP transcripts were detected respectively in 12(14.0%),18(20.1%)and 29(33.7%)of the 86 blood specimens from hepatocellular carcinoma patients,while 45 specimens(52.3%)were positive for at least one marker.In addition,MAGE-1,MAGE-3 and AFP gene transcripts were not detected in any peripheral blood specimens from 25 chronic liver disease patients and 28 normal healthy volunteers.The positive rate correlated with the TNM clinical stages,extrahepatic metastasis and portal vein carcinothrombosis(P<0.05).No correlation was found between tumor size,tumor number, differentiation,serum a-fetoprotein(AFP)and the positive rate. CONCLUSION Our results indicate that a multimarker real- time Q-PCR assay with cancer-specific markers such as MAGE-1 and MAGE-3 in combination with a hepatocyte-specific AFP marker may be a promising diagnostic tool for monitoring hepatocellular carcinoma patients with better sensitivity and specificity. | Yuqing Zhang Qiang Li Ning Liu Tianqiang Song Rende Guo Lingxin Meng Xishan Hao | 2008 | Chinese Journal of Clinical Oncology2008，5，2： | 2 |
| 8 | Immune checkpoint molecules in natural killer cells as potential targets for cancer immunotherapy显示文摘Recent studies have demonstrated the potential of natural killer(NK)cells in immunotherapy to treat multiple types of cancer.NK cells are innate lymphoid cells that play essential roles in tumor surveillance and control that efficiently kill the tumor and do not require the major histocompatibility complex.The discovery of the NK’s potential as a promising therapeutic target for cancer is a relief to oncologists as they face the challenge of increased chemo-resistant cancers.NK cells show great potential against solid and hematologic tumors and have progressively shown promise as a therapeutic target for cancer immunotherapy.The effector role of these cells is reliant on the balance of inhibitory and activating signals.Understanding the role of various immune checkpoint molecules in the exhaustion and impairment of NK cells when their inhibitory receptors are excessively expressed is particularly important in cancer immunotherapy studies and clinical implementation.Emerging immune checkpoint receptors and molecules have been found to mediate NK cell dysfunction in the tumor microenvironment;this has brought up the need to explore further additional NK cell-related immune checkpoints that may be exploited to enhance the immune response to refractory cancers.Accordingly,this review will focus on the recent findings concerning the roles of immune checkpoint molecules and receptors in the regulation of NK cell function,as well as their potential application in tumor immunotherapy. | Yuqing Cao Xiaoyu Wang Tianqiang Jin Yu Tian Chaoliu Dai Crystal Widarma Rui Song Feng Xu | 2020 | Signal Transduction and Targeted Therapy2020，5，1： | 2 |
| 9 | An Improved Unsupervised Image Segmentation Method Based on Multi-Objective Particle Swarm Optimization Clustering Algorithm显示文摘Most image segmentation methods based on clustering algorithms use singleobjective function to implement image segmentation.To avoid the defect,this paper proposes a new image segmentation method based on a multi-objective particle swarm optimization(PSO)clustering algorithm.This unsupervised algorithm not only offers a new similarity computing approach based on electromagnetic forces,but also obtains the proper number of clusters which is determined by scale-space theory.It is experimentally demonstrated that the applicability and effectiveness of the proposed multi-objective PSO clustering algorithm. | Zhe Liu Bao Xiang Yuqing Song Hu Lu Qingfeng Liu | 2019 | Computers, Materials & Continua2019，，2： | 2 |
| 10 | A Theoretical Study on the Interactions of Crown Tetraalanylpeptide with Small Metal Cations显示文摘 | Hongtao Song Guoping Liu Yuqing Yang Hongyuan Wei Yuan Jian | 2011 | Journal of Chemistry and Chemical Engineering2011，5，3： | 2 |
| 11 | Secondary light dis- tribution design for LED street light 显示文摘 | Yang Kai Song Jidong Chen Yuqing | 2011 | Proceedings of ICEOE2011，2，： | 1 |
| 12 | Association of Myeloid-derived Suppressor Cells and Efficacy of Cytokine-induced Killer Cell Immunotherapy in Metastatic Renal Cell Carcinoma Patients显示文摘 | Zibing Wang Yong Zhang Yuqing Liu Li Wang Lingdi Zhao Tiejun Yang Chaohong He Yongping Song Quanli Gao | 2014 | Journal of Immunotherapy2014，，： | 1 |
| 13 | A shrinking-based clustering approach for multidimensional data显示文摘 | Shi Yong Song Yuqing Zhang Aidong | 2005 | IEEE Transactions on Knowledge and Data Engineering2005，，10： | 1 |
| 14 | Thermo-kinetic connectivity by integrating thermo-kinetic correlation and generalized stability显示文摘Designing structured materials with optimized mechanical properties generally focuses on engineering microstructures,which are closely determined by the processing routes,such as phase transformations(PTs)and plastic deformations(PDs).Both PTs and PDs follow inherent trade-off relation between thermodynamic driving force ΔG and kinetic energy barrier Q,i.e.,so-called thermo-kinetic correlation.By analyzing nucleation and growth and proposing a conception of negative driving force integrating strain energy,interface energy and any kind of energy that equivalently inhibits the PT itself,ΔG^(S),unified expressions for the thermo-kinetic correlation and generalized stability(GS)were derived for three kinds of PTs,i.e.,diffusive PTs with simultaneously decreasedΔG and increased Q,diffusive PTs with simultaneously increasedΔG and decreased Q,and displacive PTs with simultaneously increased ΔG and decreased Q.This leads to so-called thermo-kinetic connectivity by integrating the thermo-kinetic correlation and the GS,where,by application in typical PTs,it was clearly shown,a criterion of high ΔG-high GS can be predicted by modulating chemical driving force,negative driving force and kinetic energy barrier for diffusion or nucleation.Following thermo-kinetic connectivity,analogous procedure for dislocation evolution upon PDs was performed,and materials design in terms of the highΔG-high GS criterion was discussed and prospected. | Yuqing He Shaojie Song Jinglian Du Haoran Peng Zhigang Ding Huaiyu Hou Linke Huang Yongchang Liu Feng Liu | 2022 | Journal of Materials Science & Technology2022，，32： | 1 |
| 15 | Novel Approach for Automatic Region of Interest and Seed Point Detection in CT Images Based on Temporal and Spatial Data显示文摘Accurately finding the region of interest is a very vital step for segmenting organs in medical image processing.We propose a novel approach of automatically identifying region of interest in Computed Tomography Image(CT)images based on temporal and spatial data.Our method is a 3 stages approach,1)We extract organ features from the CT images by adopting the Hounsfield filter.2)We use these filtered features and introduce our novel approach of selecting observable feature candidates by calculating contours’area and automatically detect a seed point.3)We use a novel approach to track the growing region changes across the CT image sequence in detecting region of interest,given a seed point as our input.We used quantitative and qualitative analysis to measure the accuracy against the given ground truth and our results presented a better performance than other generic approaches for automatic region of interest detection of organs in abdominal CT images.With the results presented in this research work,our proposed novel sequence approach method has been proven to be superior in terms of accuracy,automation and robustness. | Zhe Liu Charlie Maere Yuqing Song | 2019 | Computers, Materials & Continua2019，，5： | 1 |
| 16 | The accelerated blood clearance phenomenon of PEGylated nanoemulsion upon cross administration with nanoemulsions modified with polyglycerin显示文摘For investigating the accelerated blood clearance(ABC) phenomenon of polyglycerin modified nanoemulsions upon cross administration with polyethylene glycol(PEG) covered nanoemulsion, we used the 1,2-distea-royl-sn-glycero-3-phosphoethanolamine-npolyglycerine-610 and the 1,2-distearoyl-n-glycero-3-phosphoethanolamine-n-[methoxy(polyethylene glycol)-2000] as modify materials, the dialkylcarbocyanines as fluorescence indicator. Exhausted macrophages rat model was established and new material containing polycarboxyl structure was synthesized. The microplate reader and the in vivo optical imaging system were applied to measure the concentration of nanoemulsions in tissues.The results show that the first dose of polyglycerin modified nanoemulsion can induce the ABC phenomenon of the second dose of PEGylated nanoemulsion. With the increase in the amount of the surface polyglycerin, the extent of the ABC phenomenon decreases. Liver accumulation has positive relationship with the ABC phenomenon. Furthermore, kupffer cells in liver can get more immune information from polyhydroxy structure than polycarboxyl group in the modify compound. The results of our work imply that the polycarboxyl structure has advantages to eliminate the ABC phenomenon. | Yuqing Su Lirong Wang Kaifan Liang Mengyang Liu Xinrong Liu Yanzhi Song Yihui Deng | 2018 | Asian Journal of Pharmaceutical Sciences2018，13，1： | 1 |
| 17 | Depression in college: depressive symptoms and personality factors in Beijing and Hong Kong college freshmen显示文摘 | Yuqing Song Yueqin Huang | 2008 | Comprehensive psychiatry2008，49，5： | 1 |
| 18 | Molding of Molecular Sieve Residues and Their Application in Cleaning Oily Wastewater显示文摘To deeply clean oily wastewater,molecular sieve residues(MSRs)were sufficiently recycled and utilized due to their high specific surface area,porous structure,and outstanding adsorption property.Molding MSRs(MMSRs)were prepared by adding additives(starch,citric acid,and soluble glass)to MSRs and were then filled into a fixed bed for adsorbing and separating the oil in wastewater.Sodium dodecylbenzenesulfonate was used to modify the MMSRs,and their adsorption property was also investigated.In addition,the MSRs were characterized by scanning electron microscopy,energy-dispersive X-ray spectroscopy,Brunauer–Emmett–Teller analysis,and Fourier transform infrared spectroscopy.The results indicated that MMSRs satisfied the filling requirement of fixed bed,and their dynamic adsorption capacity could reach 0.1854 mg g^?1.Furthermore,the static adsorption capacity of MMSRs achieved 1.7346 mg g^?1 in the optimum conditions,and the oil adsorption performance of modified MMSRs was further enhanced.Therefore,this work suggests that MSRs are promising alternatives in cleaning oily wastewater. | Zilu Jin Yuqing Zhang Song Wei Shuai Sun | 2019 | Transactions of Tianjin University2019，25，6： | 1 |
| 19 | The As-surface of an iron-based superconductor CaKFe_(4)As_(4)显示文摘As a new type of iron-based superconductor, CaKFe_(4)As_(4) has recently been demonstrated to be a promising platform for observing Majorana zero modes (MZMs). The surface of CaKFe_(4)As_(4) plays an important role in realizing the MZM since it hosts superconducting topological surface states. However, due to the complicated crystal structure, the terminal surface of CaKFe_(4)As_(4) has not been determined yet. Here, by using scanning tunneling microscopy/spectroscopy (STM/S), we find that there are two types of surface structure in CaKFe_(4)As_(4). Bias-dependent atomic resolution images show an evolvement from 2–√×2–√ superstructure with respect to the As lattice into 1 × 1 when the tip is brought close to the surface, revealing the sublattice of missing As atoms. Together with the first-principles calculations, we show that the surface As layer has a buckled structure. Our findings provide insight to future surface study of CaKFe_(4)As_(4) as well as other iron-pnictide superconductors. | Lu Cao Yang Song Ya-Bin Liu Qi Zheng Guangyuan Han Wenyao Liu Meng Li Hui Chen Yuqing Xing Guang-Han Cao Hong Ding Xiao Lin Shixuan Du Yu-Yang Zhang Geng Li Ziqiang Wang Hong-Jun Gao | 2021 | Nano Research2021，14，11： | 1 |
| 20 | The OX40-TRAF6 axis promotes CTLA-4 degradation to augment antitumor CD8^(+)T-cell immunity显示文摘Immune checkpoint blockade(ICB),including anti-cytotoxic T-lymphocyte associated protein 4(CTLA-4),benefits only a limited number of patients with cancer.Understanding the in-depth regulatory mechanism of CTLA-4 protein stability and its functional significance may help identify ICB resistance mechanisms and assist in the development of novel immunotherapeutic modalities to improve ICB efficacy.Here,we identified that TNF receptor-associated factor 6(TRAF6)mediates Lys63-linked ubiquitination and subsequent lysosomal degradation of CTLA-4.Moreover,by using TRAF6-deficient mice and retroviral overexpression experiments,we demonstrated that TRAF6 promotes CTLA-4 degradation in a T-cell-intrinsic manner,which is dependent on the RING domain of TRAF6.This intrinsic regulatory mechanism contributes to CD8+T-cell-mediated antitumor immunity in vivo.Additionally,by using an OX40 agonist,we demonstrated that the OX40-TRAF6 axis is responsible for CTLA-4 degradation,thereby controlling antitumor immunity in both tumor-bearing mice and patients with cancer.Overall,our findings demonstrate that the OX40-TRAF6 axis promotes CTLA-4 degradation and is a potential therapeutic target for the improvement of T-cell-based immunotherapies. | Jizhang Yu Jikai Cui Xi Zhang Heng Xu Zhang Chen Yuan Li Yuqing Niu Song Wang Shuan Ran Yanqiang Zou Weicong Ye Dan Zhang Cheng Zhou Jiahong Xia Jie Wu | 2023 | Cellular & Molecular Immunology2023，20，12： | 0 |
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