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| 1 | AtCDC5 regulates the G2 to M transition of the cell cycle and is critical for the function of Arabidopsis shoot apical meristem显示文摘作为一个房间周期管理者, Myb 相关的 CDC5 蛋白质被报导为在酵母和动物的房间周期的 G2 阶段必要,但是很少在植物对它的功能被知道。这里,我们在 Arabidopsisthaliana 报导 CDC5 基因的功能的描述。Arabidopsis CDC5 (AtCDC5 ) 主要与高细胞分裂活动在纸巾被表示,并且在整个胚胎形成的全部过程被表示。AtCDC5 loss-of-functionmutant 是胚胎的致命。以便调查 AtCDC5 体内的函数,我们 AtCDC5 的表达式被 RNA 干扰在减少的 generatedAtCDC5-RNAi 植物。我们发现到 M (G2/M ) 阶段转变的 G2 在 AtCDC5-RNAi 植物被影响,并且 thatendoreduplication 被增加。另外,射击顶端分生组织(SAM ) 的维护功能在 AtCDC5-RNAi 植物被扰乱,在哪个 WUSCHEL (WUS )-CLAVATA (CLV ) 和射击无分裂组织(STM ) 小径被损害。原位杂交分析证明 STM 的表示极大地在 AtCDC5-RNAi 植物的射击顶端细胞被减少。而且, cyclinB1 或 Histone4 被发现当时,在一些这些房间被表示 STMwas 的抄本无法发现。这些结果建议 AtCDC5 为 G2/M 阶段转变是必要的并且可以由控制 STM 和 WUS 的表示调整 SAM 的功能。 | Zhiqiang Lin Kangquan Yin Danling Zhu Zhangliang Chen Hongya Gu Li-Jia Qu | 2007 | Cell Research2007，17，9： | 13 |
| 2 | TRANSLUCENT GREEN, an ERF Family Transcription Factor, Controls Water Balance in Arabidopsis by Activating the Expression of Aquaporin Genes显示文摘水是在几乎所有生活有机体的最丰富的分子。Aquaporins 是玩控制房间的水内容的批评 rolesin 的隧道蛋白质。这里,我们报导 AP2/EREBP 家庭抄写 factorin Arabidopsis thaliana 的鉴定,半透明的格林( TG )其在转基因的植物的 overexpression 给了提高的干旱忍耐并且使 leaves.TG 蛋白质成玻璃在原子核是局部性的,在 vitro 绑 DRE 和 GCC 元素,并且在酵母房间充当 transcriptional 使活跃之物。Microarray 分析揭示了 TG,五基因在之中编码 aquaporins 调整的 330 基因的一个总数。短暂表示试金证明 TG 直接绑在 threeaquaporin 基因的倡导者,例如 AtTIP1; 1, AtTIP2; 3,并且 AtPIP2; 2,直接显示那 TG 调整这些基因的表示。而且, AtTIP1 的 overexpression; 1 在转基因的 Arabidopsis 植物导致了使成玻璃的显型,类似于在 TG overexpression 线观察的那些。进野类型的叶子的水注射概括了 vitrifiedleaf 显型,它被从脉管的捆割掉水供应颠倒。一起拿,我们在通过直接激活 aquaporin genes.Key 词的表达式的 Arabidopsis 的数据 supportthat TG 控制水平衡: | Danling Zhu Zhe Wu Guangyu Cao Jigang Li Jia Wei Tomohiko Tsuge Hongya Gua Takashi Aoyama Li-Jia Qu | 2014 | Molecular Plant2014，7，4： | 8 |
| 3 | Methionine oxidation and reduction of the ethylene signaling component MaEIL9 are involved in banana fruit ripening显示文摘The ethylene insensitive 3/ethylene insensitive3-like(EIN3/EIL)plays an indispensable role in fruit ripening.However,the regulatory mechanism that links post-translational modification of EIN3/EIL to fruit ripening is largely unknown.Here,we studied the expression of 13 MaE IL genes during banana fruit ripening,among which MaE IL9 displayed higher enhancement particularly in the ripening stage.Consistent with its transcript pattern,abundance of MaE IL9 protein gradually increased during the ripening process,with maximal enhancement in the ripening.DNA affinity purification(DAP)-seq analysis revealed that MaE IL9 directly targets a subset of genes related to fruit ripening,such as the starch hydrolytic genes MaA MY3D and MaB AM1.Stably overexpressing MaE IL9 in tomato fruit hastened fruit ripening,whereas transiently silencing this gene in banana fruit retarded the ripening process,supporting a positive role of MaEIL9 in fruit ripening.Moreover,oxidation of methionines(Met-129,Met-130,and Met-282)in MaEIL9 resulted in the loss of its DNA-binding capacity and transcriptional activation activity.Importantly,we identified MaEIL9 as a potential substrate protein of methionine sulfoxide reductase A MaMsrA4,and oxidation of Met-129,Met-130,and Met-282in MaEIL9 could be restored by MaMsrA4.Collectively,our findings reveal a novel regulatory network controlling banana fruit ripening,which involves MaMsrA4-mediated redox regulation of the ethylene signaling component MaEIL9. | Lisha Zhu Lin Chen Chaojie Wu Wei Shan Danling Cai Zengxiang Lin Wei Wei Jianye Chen Wangjin Lu Jianfei Kuang | 2023 | Journal of Integrative Plant Biology2023，65，1： | 1 |
| 4 | The Features and Regulation of Co-transcriptional Splicing in Arabidopsis显示文摘Precursor mRNA(pre-mRNA)splicing is essential for gene expression in most eukaryotic organisms.Previous studies from mammals,Drosophila,and yeast show that the majority of splicing events occurs co-transcriptionally.In plants,however,the features of co-transcriptional splicing(CTS)and its regulation still remain largely unknown.Here,we used chromatin-bound RNA sequencing to study CTS in Arabidopsis thaliana.We found that CTS is widespread in Arabidopsis seedlings,with a large proportion of alternative splicing events determined co-transcriptionally.CTS efficiency correlated with gene expression level,the chromatin landscape and,most surprisingly,the number of introns and exons of individual genes,but is independent of gene length.In combination with enhanced crosslinking and immunoprecipitation sequencing analysis,we further showed that the hnRNP-like proteins RZ-1B and RZ-1C promote efficient CTS globally through direct binding,frequently to exonic sequences.Notably,this general effect of RZ-1B/1C on splicing promotion is mainly observed at the chromatin level,not at the mRNA level.RZ-1C promotes CTS of multiple-exon genes in association with its binding to regions both proximal and distal to the regulated introns.We propose that RZ-1C promotes efficient CTS of genes with multiple exons through cooperative interactions with many exons,introns,and splicing factors.Our work thus reveals important features of CTS in plants and provides methodologies for the investigation of CTS and RNA-binding proteins in plants. | Danling Zhu Fei Mao Yuanchun Tian Xiaoya Lin Lianfeng Gu Hongya Gu Li-jia Qu Yufeng Wu Zhe Wu | 2020 | Molecular Plant2020，13，2： | 1 |
| 5 | Instability of the Marangoni convection in a liquid bridge with liquid encapsulation under microgravity condition显示文摘 | Li Mingwei Zeng Danling Zhu Tingxia | | 0，，： | 1 |
| 6 | Grenvillian and early Paleozoic polyphase metamorphism recorded by eclogite and host garnet mica schist in the North Qaidam orogenic belt显示文摘The North Qaidam orogenic belt(NQOB) is generally considered to be an early Paleozoic ultrahigh pressure metamorphic belt,but increasing reports of the Neoproterozoic magmatic and metamorphic events indicate that the NQOB probably also experienced the assembly of the Rodinia.However,the Neoproterozoic evolution of the NQOB is not well constrained due to the sparse records and ambiguous nature of the Neoproterozoic metamorphism.In order to reveal the multi-orogenic history of the NQOB,an integrated study of petrology,phase equilibrium modelling and geochronology was conducted on an epidote eclogite and host garnet mica schist from the Yuka–Luofengpo terrane.New zircon and monazite U–Pb ages show that the protolith of the garnet mica schist was deposited during 994–920 Ma and experienced Neoproterozoic(920–915 Ma) and early Paleozoic(451–447 Ma) polyphase metamorphism together with the enclosed eclogite.Relic omphacite inclusions were first identified in garnet and early Paleozoic zircon domains from the garnet mica schist,which provide solid evidence for the early Paleozoic eclogite facies metamorphism of the mica schist.Similar early Paleozoic peak P–T conditions of >27.4 kbar/613–670 ℃ and 30.2–30.8 kbar/646–655 ℃ were obtained for the garnet mica schist and enclosed eclogite,respectively,indicating that eclogites and their host paragneisses in this region underwent continental deep subduction as a coherent metamorphic terrane in early Paleozoic.The peak P–T conditions of the Neoproterozoic metamorphism were roughly constrained at 7.7–12.0 kbar and 634–680 ℃ for the garnet mica schist,based on stability field of mineral inclusions in Neoproterozoic zircons domains in P–T pseudosection,the relic garnet core composition and Ti-in-zircon thermometer.The high thermal gradients(16–37 ℃/km) defined by presently our and previously reported P–T conditions indicate that the Neoproterozoic metamorphism likely occurred in continental collision setting at >945–890 Ma.Since the Grenvillian syn-orogenic granitic magmatism and metamorphism(ca.1.0–0.9 Ga) in the NQOB are much younger than the Grenvillian orogeny in the central part of Rodinia,the Qaidam Block was probably located at the north margin of Rodinia in Neoproterozoic. | Yunfei Ren Danling Chen Haijie Wang Xiaohui Zhu Bowen Bai | 2021 | Geoscience Frontiers2021，12，4： | 0 |
| 7 | Analysis of Epidemic Prevention Strategies of Omicron Variant Abroad显示文摘Omicron variant was first found in Botswana, southern Africa, on November 9, 2021. The variant has many mutations and spreads quickly. It also has immune escape to existing COVID-19 vaccines, and the infection rate and repeated infection rate have increased worldwide. For such variant, at this stage, foreign countries mainly adopt three strategies to prevent and control the epidemic. First, big data is used to track the potential infection of the epidemic, trace the spread of the epidemic, screen close contacts, and control the scope of infection. The second is to maximum the coverage rate of vaccination, especially the coverage rate of the third injection, so as to reduce the infection level of Omicron variant. At last, they are developing a general coronavirus vaccine to prevent infection caused by SARS-CoV-2 variants, including the Omicron variant, so as to fundamentally eliminate the potential threat of variants to human beings. In this paper, three major epidemic prevention strategies of Omicron variant abroad were summarized in detail. | Danling QIN Qian SHI Xuetong ZHU Xijuan XU Tianyuan XU | 2023 | Agricultural Biotechnology2023，12，1： | 0 |
| 8 | BiodMHC:an online server for the prediction of MHC class Ⅱ-peptide binding affinity显示文摘Effective identification of major histocompatibility complex (MHC) molecules restricted peptides is a critical step in discovering immune epitopes. Although many online servers have been built to predict class Ⅱ MHC-peptide binding affinity, they have been trained on different datasets, and thus fail in providing a unified comparison of various methods. In this paper, we present our implementation of seven popular predictive methods, namely SMM-align, ARB, SVR-pairwise, Gibbs sampler, ProPred, LP-top2, and MHCPred, on a single web server named BiodMHC (http://gffzz1faacc889862489dhx6pkuww5o5fn60on.ffgz.tsg.suse.edu.cn/BiodMHC/index.html, the software is available upon request). Using a standard measure of AUC (Area Under the receiver operating characteristic Curves), we compare these methods by means of not only cross validation but also prediction on independent test datasets. We find that SMM-align, ProPred, SVR-pairwise, ARB, and Gibbs sampler are the five best-performing methods. For the binding affinity prediction of class Ⅱ MHC-peptide, BiodMHC provides a convenient online platform for researchers to obtain binding information simultaneously using various methods. | Lian Wang Danling Pan Xihao Hu Jinyu Xiao Yangyang Gao Huifang Zhang Yan Zhang Juan Liu Shanfeng Zhu | 2009 | Journal of Genetics and Genomics2009，36，5： | 0 |
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