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| 1 | The Hardy Rubber Tree Genome Provides Insights into the Evolution of Polyisoprene Biosynthesis显示文摘Eucommia ulmoides,也叫的强壮的橡胶树,是一棵经济地重要的树;然而,它的染色体顺序的缺乏 ?限制基本生物研究和这植物种的应用研究。这里,我们在场它的 1.2-Gb 染色体的一个高质量的集会(支架 N50 ?=? 1.88 Mb ) 与至少 26 ? 为 E 的 723 预言的基因。ulmoides,顺序 Garryales 的首先定序的染色体,它用联合定序的 Illumina 的综合策略被获得,定序的 PacBio,和印射的 BioNano。作为到 lamiids 和 campanulids 的姐妹 taxon, E。ulmoides 经历了三倍由核心 eudicots 而是没有进一步整个染色体的复制分享了的一个古老的染色体 ? 在最后 1.25 亿年里。E。ulmoides 为涉及压力回答和第二等的代谢物的生合成的多重基因展出高表达式层次或基因数字扩大,它可以说明它的可观的环境适应性。与橡胶树(Hevea brasiliensis ) 相对照,它生产 cis 聚异式戊二我烯, E。ulmoides 演变综合经由 farnesyl diphosphate synthases (FPS ) 的长链的 trans 聚异式戊二我烯。而且, FPS 和橡胶延伸 factor/small 橡胶粒子蛋白质基因家庭从 H 独立地被扩展。brasiliensis 系。这些结果提供新卓见进 E. 的生物学 ? ulmoides 和聚异式戊二我烯生合成的起源。 | Ta-na Wuyun Lin Wang Huimin Liu Xuewen Wang Liangsheng Zhang Jeffrey L. Bennetzen Tiezhu Li Lirong Yang Panfeng Liu Lanying Du Lu Wang Mengzhen Huang Jun Qing Iili Zhu Wenquan Bao Hongguo Li Qingxin Du Jingle Zhu Hong Yang Shuguang Yang Hui Liu Hui Yue Jiang Hu Suoliang Yu Yu Tian Fan Liang Jingjing Hu Depeng Wang Ruiwen Gao Dejun Li Hongyan Du | 2018 | Molecular Plant2018，11，3： | 24 |
| 2 | Status and distribution changes of the endangered Green Peafowl (Pavo muticus) in China over the past three decades (1990s-2017)显示文摘Background: Understanding the changes in population dynamics, including demographics, distribution and threats, is essential for species status assessing. The endangered Green Peafowl(Pavo muticus) has experienced sharp population declines and distribution range diminishing both in China and Southeast Asia. Field population surveys have not been conducted in China since the 1990 s, which hindered conservation planning and decision-making.Methods: With interview and line transects methods, we figured out the population and distribution changes of Green Peafowl across its historical ranges over the past three decades in China during 2014-2017.Results: The Green Peafowl once habituated in 54 counties in China. Nearly 60% of the distribution counties were lost in the past three decades, with the left 22 counties distributed in central, southern and western Yunnan, SW China. Population decrease detected in all distribution areas except for Shuangbai and Xinping county where more than 60% of the total population is located. Only about 30% of the former bird population were recorded with the same interviewing method as 20 years ago. Three birds, 1 carcass, 6 calls and 12 footprints were detected along the 865 km line transects, indic-ating extremely low encounter rate of Green Peafowl in field. Sharp decreases in flock sizes were also detected, from 820 birds per flock in the 1990 s to 3-5 birds at present. Poaching and habitat conversion are two widespread and long-lasting threats, while poisoning caused mortality in the past and hydropower construction affect regional population's survival. Large flocks of 18–27 birds were discovered in the field, which increases our confidence of population recovery of this endangered pheasant in China.Conclusions: Only interviewed bird number and counts based on line transects were presented in this study, without further population estimation due to limitation of the data sets. Although the actual population of this cryptic bird must be underestimated, dramatic population declines and distribution concentrations of the endangered Green Peafowl occurred over the past 30 years in China undoubtedly. | Dejun Kong Fei Wu Pengfei Shan Jianyun Gao Dao Yan Weixiong Luo Xiaojun Yang | 2018 | Avian Research2018，9，2： | 12 |
| 3 | Optimized design and experiment on ring mold pelletizer for producing biomass fuel pellets显示文摘The forming process of biomass fuel pellets using a ring mold pelletizer was analyzed,optimized,tested and evaluated in this study.The effects of stress amplitude and the stress ratio on the fatigue failure of the ring mold under 4-,3-,and 2-roller designs were investigated.Depending on the calculation of stress amplitude acting on the ring mold,the 4-roller design was chosen for having the smallest value of stress amplitude in this condition.After determining the main design parameters,a three-dimensional model of the ring mold pelletizer was established based on the Pro/Engineer software,and the model was transferred into ADAMS software through Mechanism/Pro which is a dedicated interface software.The ADAMS software was used to run simulations.In order to obtain the highest efficiency and the lowest power consumption,the optimal result was the 4-roller design.Finally,a prototype of the ring mold pelletizer with four rollers was designed and manufactured for biomass fuel pellet production.Corn stover biomass was used as material for experimental manufacturing of fuel pellets.Test and evaluation showed that the optimized pellet durability was 99.79%with ground corn stover particles passing a screen size of 1.97 mm,moisture content of 21.2%w.b.and a material moisture conditioning time of 3.82 h.Pellets formed in the prototype ring mold pelletizer using corn stover had acceptable durability according to European standards. | Gao Wei Lope G Tabil Zhao Rongfei Liu Dejun | 2016 | International Journal of Agricultural and Biological Engineering2016，9，3： | 3 |
| 4 | Assessing Drought Conditions in Cloudy Regions Using Reconstructed Land Surface Temperature显示文摘Temperature vegetation dryness index(TVDI)in a triangular or trapezoidal feature space can be calculated from the land surface temperature(LST)and normalized difference vegetation index(NDVI),and has been widely applied to regional drought monitoring.However,thermal infrared sensors cannot penetrate clouds to detect surface information of sub-cloud pixels.In cloudy areas,LST data include a large number of cloudy pixels,seriously degrading the spatial and temporal continuity of drought monitoring.In this paper,the Remotely Sensed Daily Land Surface Temperature Reconstruction model(RSDAST)is combined with the LST reconstructed(RLST)by the RSDAST and applied to drought monitoring in a cloudy area.The drought monitoring capability of the reconstructed temperature vegetation drought index(RTVDI)under cloudy conditions is evaluated by comparing the correlation between land surface observations for soil moisture and the TVDI before and after surface temperature reconstruction.Results show that the effective duration and area of the RTVDI in the study area were larger than those of the original TVDI(OTVDI)in 2011.In addition,RLST/NDVI scatter plots cover a wide range of values,with the fitted dry–wet boundaries more representative of real soil moisture conditions.Under continuously cloudy conditions,the OTVDI inverted from the original LST(OLST)loses its drought monitoring capability,whereas RTVDI can completely and accurately reconstruct surface moisture conditions across the entire study area.The correlation between TVDI and soil moisture is stronger for RTVDI(R=-0.45)than that for OTVDI(R=-0.33).In terms of the spatial and temporal distributions,the R value for correlation between RTVDI and soil moisture was higher than that for OTVDI.Hence,in continuously cloudy areas,RTVDI not only expands drought monitoring capability in time and space,but also improves the accuracy of surface soil moisture monitoring and enhances the applicability and reliability of thermal infrared data under extreme conditions. | Shiqi YANG Dejun ZHANG Liang SUN Yongqian WANG Yanghua GAO | 2020 | Journal of Meteorological Research2020，34，2： | 3 |
| 5 | Optical fiber SPR biosensor complying with a 3D composite hyperbolic metamaterial and a graphene film显示文摘In the present study, an optical fiber surface plasmon resonance(SPR) biosensor was developed for measuring time-and concentration-dependent DNA hybridization kinetics. Its design complies with a 3D Au∕Al2O3 multilayer composite hyperbolic metamaterial(HMM), a graphene film, and a D-shaped plastic optical fiber.According to the numerical simulation and the experimental demonstration, the SPR peak of the designed biosensor can be effectively altered in the range of visible to near-infrared by varying the HMM structure. The sensitivity of the appliance was shown to achieve a value of up to 4461 nm/RIU, allowing its applicability for bulk refractive index sensing. Furthermore, a biosensor designed in this work displayed high-resolution capability(ranging from 10 pM to 100 nM), good linearity, and high repeatability along with a detection limit down to 10 pM, thus suggesting a vast potential for medical diagnostics and clinical applications. | Can Li Jinjuan Gao Muhammad Shafi Runcheng Liu Zhipeng Zha Dejun Feng Mei Liu Xuejian Du Weiwei Yue Shouzhen Jiang | 2021 | Photonics Research2021，9，3： | 3 |
| 6 | VlbZIP30 of grapevine functions in dehydration tolerance via the abscisic acid core signaling pathway显示文摘Drought stress limits the growth and development of grapevines,thereby reducing productivity,but the mechanisms by which grapevines respond to drought stress remain largely uncharacterized.Here,we characterized a group A bZIP gene from“Kyoho”grapevine,VlbZIP30,which was shown to be induced by abscisic acid(ABA)and dehydration stress.Overexpression of VlbZIP30 in transgenic Arabidopsis thaliana enhanced dehydration tolerance.Transcriptome analysis revealed that a major proportion of ABA-responsive and/or drought-responsive genes are transcriptionally regulated by VlbZIP30 during ABA or mannitol treatment at the cotyledon greening stage.We identified an A.thaliana G-box motif(CACGTG)and a potential grapevine G-box motif(MCACGTGK)in the promoters of the 39 selected A.thaliana genes upregulated in the transgenic plants and in the 35 grapevine homologs,respectively.Subsequently,using two grapevine-related databases,we found that 74%(23/31)and 84%(21/25)of the detected grapevine genes were significantly upregulated by ABA and drought stress,respectively,suggesting that these genes are involved in ABA or dehydration stress and may be regulated by VlbZIP30 in grapevine.We propose that VlbZIP30 functions as a positive regulator of dehydration-responsive signaling in the ABA core signaling pathway. | Mingxing Tu Xianhang Wang Yanxun Zhu Dejun Wang Xuechuan Zhang Ye Cui Yajuan Li Min Gao Zhi Li Yuejin Wang Xiping Wang | 2018 | Horticulture Research2018，5，1： | 2 |
| 7 | The coral grayness in northern South China Sea and its description of interdecadal variation of precipitation in south China显示文摘The interdecadal variation of coral grayness in northern South China Sea (SCS) is studied using the annual mean coral grayness in northern SCS from 1789 to 1992 and annual precipitation at Guangzhou from 1908 to 1992 by Singular Spectrum Analysis (SSA), correlation analysis, Mann-Kendall’s abrupt change analysis and composite analysis. The interdecadal variation of south China precipitation as reflected by the series of Guangzhou precipitation rebuilt with the coral grayness is discussed. The results show that the variation of coral grayness in SCS has significant terms of tendency, much-weighted interdecadal variation and weak interannual variation. There was a century-scale abrupt change of coral grayness at the end of the 1880s that changed from positive anomalies to negative anomalies. The global field of SST difference corresponding to the point of abrupt change was negative anomalies over the SCS and neighboring northern Indian Ocean, most of central and western Pacific Ocean and coastal areas of the northern Atlantic Ocean. The large-scale distribution of SST anomalies is concomitant with the century-scale abrupt change of coral grayness in SCS. Negative correlation exists between the coralgrayness in SCS and precipitation in Guangzhou on the interdecadal scale and the interdecadal precipitation in Guangzhou as reflected by the interdecadaldata of SCS coral grayness shows that the interdecadal variation of south China precipitation changes significantly from phase to phase. The current study aims at contributing in the effort of identifying alternative indexes for climate change in south China on the interdecadal scale and beyond. | GU Dejun WANG Dongxiao SUN Donghuai GAO Rongzhen JI Zhongping | 2006 | Chinese Science Bulletin2006，51，B12： | 2 |
| 8 | Analysis of an automatic steel-teeming method using electromagnetic induction heating in slide gate system显示文摘 | GAO Ao LI Dejun WANG Qiang | 2010 | The Iron and Steel Institute of International2010，50，12： | 1 |
| 9 | GPU-accelerated phase field simulation of directional solidification显示文摘The phase field simulation has been actively studied as a powerful method to investigate the microstructural evolution during the solidification.However,it is a great challenge to perform the phase field simulation in large length and time scale.The developed graphics processing unit(GPU)calculation is used in the phase filed simulation,greatly accelerating the calculation efficiency.The results show that the computation with GPU is about 36 times faster than that with a single Central Processing Unit(CPU)core.It provides the feasibility of the GPU-accelerated phase field simulation on a desktop computer.The GPU-accelerated strategy will bring a new opportunity to the application of phase field simulation. | GAO Ang HU YanSu WANG ZhiJun MU DeJun LI JunJie WANG JinCheng | 2014 | Science China(Technological Sciences)2014，57，6： | 1 |
| 10 | The Arabidopsis tt19-4 mutant differentially accumulates proanthocyanidin and anthocyanin through a 3'amino acid substitution in glutathione S-transferase显示文摘 | Li Xiang Gao Peng Cui Dejun | | 0，，34： | 1 |
| 11 | Proteome-Wide Profiling of the Covalent-Druggable Cysteines with a Structure-Based Deep Graph Learning Network显示文摘Covalent ligands have attracted increasing attention due to their unique advantages,such as long residence time,high selectivity,and strong binding affinity.They also show promise for targets where previous efforts to identify noncovalent small molecule inhibitors have failed.However,our limited knowledge of covalent binding sites has hindered the discovery of novel ligands.Therefore,developing in silico methods to identify covalent binding sites is highly desirable.Here,we propose DeepCoSI,the first structure-based deep graph learning model to identify ligandable covalent sites in the protein.By integrating the characterization of the binding pocket and the interactions between each cysteine and the surrounding environment,DeepCoSI achieves state-of-the-art predictive performances.The validation on two external test sets which mimic the real application scenarios shows that DeepCosI has strong ability to distinguish ligandable sites from the others.Finally,we profiled the entire set of protein structures in the RCSB Protein Data Bank(PDB)with DeepCoSI to evaluate the ligandability of each cysteine for covalent ligand design,and made the predicted data publicly available on website. | Hongyan Du Dejun Jiang Junbo Gao Xujun Zhang Lingxiao Jiang Yundian Zeng Zhenxing Wu Chao Shen Lei Xu Dongsheng Cao Tingjun Hou Peichen Pan | 2022 | Research2022，，4： | 1 |
| 12 | Hexavalent chromium removal from aqueous solution by adsorption on aluminum magnesium mixed hydroxide显示文摘 | Yujiang Li Baoyu Gao Tao Wu Dejun Sun Xia Li Biao Wang Fengjuan Lu | 2009 | Water Research2009，，12： | 1 |
| 13 | Back analysis of calculation parameters for Dashiban landslide at Three Gorges Reservoir on Yangtze River显示文摘 | GAO Dejun XU Weiya GUO Qida | 2006 | Journal of Hohai University: Natural Sciences2006，34，1： | 1 |
| 14 | The fluctuation of acoustic field due to internal waveson the thermocline in typical shallow water显示文摘In this paper, the results of experiments concerning the fluctuations of internal waves on the thermocline and the fluctuations of acoustic amplitudes at different ranges in typical shallow water are presented. Recorded time is 48.96 h. Thickness of the thermocline is about 2 m-4 m. The deviation of temperature recorded at a fixed depth is 10℃-15℃. The vertical displacement of isotherm curves is about 5 m-6 m, which is mainly dominated by the lowest model. The measured spectrums of vertical displacement have obvious spectral packet within the range of 0.05 cpm (20 min) and 0. 143 cpm (7 min) besides the diurnal and semidiurnal tide frequency bands. Spectrum attenuation coefficients are between -1.5 and -1.7. Numerical calculation shows that phase velocity and group velocity of internal waves are equal to 0.329 m/s at lower frequencies. And with the increasing of frequency, the group velocity differs from phase velocity at about 0.03 cpm (33.33 min) and drops more quickly. The measured fluctuation of acoustic amplitude is about 8 dB-10 dB. With the increasing of range, the fluctuation trends to be faster and acoustic signals are declining. Spectrum attenuation coefficients are between -1.45 and -2.0. At last, PE method is used to simulate the acoustic amplitude fluctuation, in which internal waves are the important element. | JIANG Dejun GAO Tianfu ZHANG Yunpeng GAO Bing(Institute of Acoustics, Academia Sinica Beijing 100080) | 1998 | Chinese Journal of Acoustics1998，17，1： | 0 |
| 15 | A method for calculating the seabed acousticattenuation coefficient in shallow water显示文摘In this paper, a method of effectively calculating the acoustic attenuation coefficient for a fluid seabed with high sound speed is presented. The method is formulated based on the fact that the fractional part of the attenuation coefficient contributed by the water column varies slowly with different normal modes. One of the advanages of the method is that it can remove the effects of the water column absorption. Furthermore, the method can be used to invrse the seabed acoustic attenuation coefficient in a wider frequency range of ≤ 2 kHz than the conventional methods (f ≤200 Hz). | JIANG Dejun and GAO Tianfu (Institute of Acoustics, Academia Sinica Beijing 100080)Received | 1997 | Chinese Journal of Acoustics1997，16，2： | 0 |
| 16 | Modern Composite Materials and Technical Strategies in Posttraumatic Augmentation Rhinoplasty显示文摘The selection of ideal posttraumatic augmentation rhinoplasty materials and technical strategies has always been a pressing challenge.Owing to the complexity of the traumatic nasal anatomical structure,such procedures are more complicated than ordinary cosmetic rhinoplasty.The choice of reconstruction material should emphasize its inherent characteristics,such as biocompatibility,anti-infective ability,strength,and plasticity.With the development of rhinoplasty,the choice of material is less limited and composite materials have become mainstream.This review outlines current composite materials and techniques in posttraumatic augmentation rhinoplasty. | Jiaman GAO Dejun CAO | 2020 | Chinese Journal Of Plastic and Reconstructive Surgery2020，2，1： | 0 |
| 17 | Numerical Simulation of a Multi-Frequency Resistivity Logging-While-Drilling Tool Using a Highly Accurate and Adaptive Higher-Order Finite Element Method显示文摘A novel,highly efficient and accurate adaptive higher-order finite element method(hp-FEM)is used to simulate a multi-frequency resistivity loggingwhile-drilling(LWD)tool response in a borehole environment.Presented in this study are the vector expression of Maxwell’s equations,three kinds of boundary conditions,stability weak formulation of Maxwell’s equations,and automatic hpadaptivity strategy.The new hp-FEM can select optimal refinement and calculation strategies based on the practical formation model and error estimation.Numerical experiments show that the new hp-FEM has an exponential convergence rate in terms of relative error in a user-prescribed quantity of interest against the degrees of freedom,which provides more accurate results than those obtained using the adaptive h-FEM.The numerical results illustrate the high efficiency and accuracy of the method at a given LWD tool structure and parameters in different physical models,which further confirm the accuracy of the results using the Hermes library(http://gffzz741bd96fb8484393h00kub6xfxc5n6kku.ffgz.tsg.suse.edu.cn/hermes)with a multi-frequency resistivity LWD tool response in a borehole environment. | Zhonghua Ma Dejun Liu Hui Li Xinsheng Gao | 2012 | Advances in Applied Mathematics and Mechanics2012，4，4： | 0 |
| 18 | EFFECTS OF DEFORMATION ON MICROSTRUCTURE AND σ-PHASE FORMATION IN Cr_(25)Ni_(20) STAINLESS STEEL显示文摘The microstructure of Cr25Ni20stainless steel under plastic deformation up to 50% has re-vealed an even distributed twins,micro-twins and deformation bands.The σ-phase formationin 800℃ aged specimens is accelerated by its nucleation at either deformation twins orrecrystallized grain boundaries under less or more deformation respectively.In therecrystallized zone,the recrystallization is prior to the precipitation of σ-phase.Althoughrecrystallization may accelerate the formation of σ-phase,it is not essential.The twins andmicro-twins produced by deformation may also provide the additional nucleation sites. | GAO Yan LI Dejun CAO Zhiben Dalian University of Science and Technology,Dalian,Liaoning,China LI Dejun,Lecturer,Department of Materials Engineering,Dalian University of Science and Technology,Dalian,Liaoning,China | 1989 | Acta Metallurgica Sinica(English Letters)1989，2，2： | 0 |
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