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您的检索式：作者名="Gongchao Jing"
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| 1 | Meta-QC-Chain:Comprehensive and Fast Quality Control Method for Metagenomic Data显示文摘Next-generation sequencing(NGS) technology has revolutionized and significantly impacted metagenomic research.However,the NGS data usually contains sequencing artifacts such as low-quality reads and contaminating reads,which will significantly compromise downstream analysis.Many quality control(QC) tools have been proposed,however,few of them have been verified to be suitable or efficient for metagenomic data,which are composed of multiple genomes and are more complex than other kinds of NGS data.Here we present a metagenomic data QC method named Meta-QC-Chain.Meta-QC-Chain combines multiple QC functions:technical tests describe input data status and identify potential errors,quality trimming filters poor sequencing-quality bases and reads,and contamination screening identifies higher eukaryotic species,which are considered as contamination for metagenomic data.Most computing processes are optimized based on parallel programming.Testing on an 8-GB real dataset showed that Meta-QC-Chain trimmed low sequencing-quality reads and contaminating reads,and the whole quality control procedure was completed within 20 min.Therefore,Meta-QC-Chain provides a comprehensive,useful and high-performance QC tool for metagenomic data.Meta-QC-Chain is publicly available for free at:http://gffzz707e30105d1445a1hqqbb9bv0qpvu6pbq.ffgz.tsg.suse.edu.cn/meta-qc-chain.html. | Qian Zhou Xiaoquan Su Gongchao Jing Kang Ning | 2014 | Genomics, Proteomics & Bioinformatics2014，12，1： | 4 |
| 2 | Application of Meta-Mesh on the analysis of microbial communities from human associated-habitats显示文摘 | Xiaoquan Su Xiaojun Wang Gongchao Jing Shi Huang Jian Xu Kang Ning | 2015 | Frontiers of Electrical and Electronic Engineering in China2015，10，1： | 1 |
| 3 | Comprehensive understanding to the public health risk of environmental microbes via a microbiome-based index显示文摘Bacteria are ubiquitous in built environments(BE)and different human body sites.Among the myriad of microbes,the pathogenic bacteria are of great interest to public health and safety,which were the cause of many public health emergency outbreak. | Zheng Sun Xudong Liu Gongchao Jing Yuzhu Chen Shuaiming Jiang Meng Zhang Jiquan Liu Jian Xu Xiaoquan Su | 2022 | Journal of Genetics and Genomics2022，49，7： | 0 |
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