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| 1 | The F-box protein SHORT PRIMARY ROOT modulates primary root meristem activity by targeting SEUSS-LIKE protein for degradation in rice显示文摘Root meristem activity is essential for root morphogenesis and adaptation,but the molecular mechanism regulating root meristem activity is not fully understood.Here,we identify an F-box family E3 ubiquitin ligase named SHORT PRIMARY ROOT(SHPR) that regulates primary root(PR)meristem activity and cell proliferation in rice.SHPR loss-of-function mutations impair PR elongation in rice.SHPR is involved in the formation of an SCF complex with the Oryza sativa SKP1-like protein OSK1/20.We show that SHPR interacts with Oryza sativa SEUSS-LIKE(OsSLK) in the nucleus and is required for OsSLK polyubiquitination and degradation by the ubiquitin 26S-proteasome system(UPS).Transgenic plants overexpressing OsSLK display a shorter PR phenotype,which is similar to the SHPR loss-of-function mutants.Genetic analysis suggests that SHPR promotes PR elongation in an OsSLK-dependent manner.Collectively,our study establishes SHPR as an E3 ubiquitin ligase that targets OsSLK for degradation,and uncovers a protein ubiquitination pathway as a mechanism for modulating root meristem activity in rice. | Nini Ma Nian Li Zhongmao Yu Chunli Chen Dao-Xiu Zhou Yu Zhao | 2023 | Journal of Integrative Plant Biology2023，65，8： | 0 |
| 2 | CNEReg Interprets Ruminant-specific Conserved Non-coding Elements by Developmental Gene Regulatory Network显示文摘The genetic information coded in DNA leads to trait innovation via a gene regulatory network(GRN)in development.Here,we developed a conserved non-coding element interpretation method to integrate multi-omics data into gene regulatory network(CNEReg)to investigate the ruminant multi-chambered stomach innovation.We generated paired expression and chromatin accessibility data during rumen and esophagus development in sheep,and revealed 1601 active ruminantspecific conserved non-coding elements(active-RSCNEs).To interpret the function of these activeRSCNEs,we defined toolkit transcription factors(TTFs)and modeled their regulation on rumenspecific genes via batteries of active-RSCNEs during development.Our developmental GRN revealed 18 TTFs and 313 active-RSCNEs regulating 7 rumen functional modules.Notably,6 TTFs(OTX1,SOX21,HOXC8,SOX2,TP63,and PPARG),as well as 16 active-RSCNEs,functionally distinguished the rumen from the esophagus.Our study provides a systematic approach to understanding how gene regulation evolves and shapes complex traits by putting evo-devo concepts into practice with developmental multi-omics data. | Xiangyu Pan Zhaoxia Ma Xinqi Sun Hui Li Tingting Zhang Chen Zhao Nini Wang Rasmus Heller Wing Hung Wong Wen Wang Yu Jiang Yong Wang | 2023 | Genomics, Proteomics & Bioinformatics2023，21，3： | 0 |
| 3 | Retention mechanism of calcium ferrite and compositions of ash on selenium during chemical looping gasification显示文摘Selenium pollution by coal utilization is of increasing concern.Calcium-iron(Ca-Fe)oxygen carriers(OCs)and alkali metal ions have strong inhibitory effects on selenium,which can reduce the emissions of selenium vapor.The retention mechanisms of selenium by Fe_(2)O_(3),CaFe_(2)O_(4),Ca_(2)Fe_(2)O_(5) and bottom ash are investigated during chemical looping gasification(CLG).Iron-based OC can oxidize H_(2)Se(g)to SeO_(2)(g);furthermore,lattice oxygen is released by Fe_(2)O_(3),contributing to the formation of an Fe-O-Se structure to retain selenium and form selenite.Because calcium ferrite is poorly oxidizing,it cannot oxidize H_(2)Se(g),but the CaO produced when OCs are reduced can react with H_(2)Se(g)to form CaSe(s),and this process can be promoted by H_(2)S(g).The best retention rates reached 32.301%when Ca_(2)Fe_(2)O_(5) was used.In the cyclic experiment,the selenium retention of the bottom ash gradually increases.Alkali metal ions in bottom ash are the main factor in retaining selenium.Ca^(2+) and Mg^(2+) do not easily vaporize due to their high melting points;therefore,their selenium retention is significantly better than that of K^(+) and Na^(+).This research provided a new idea for the removal of selenium by using OCs and bottom ash par-ticles during CLG. | Ziheng Han Huifen Kang Nini Yuan Xintong Guo Jingjing Ma Qingjie Guo | 2023 | Particuology2023，，8： | 0 |
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