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| 1 | An inferred functional impact map of genetic variants in rice显示文摘Interpreting the functional impacts of genetic variants(GVs)is an important challenge for functional genomic studies in crops and next-generation breeding.Previous studies in rice(Oryza sativa)have focused mainly on the identification of GVs,whereas systematic functional annotation of GVs has not yet been performed.Here,we present a functional impact map of GVs in rice.We curated haplotype information for 17397026 GVs from sequencing data of 4726 rice accessions.We quantitatively evaluated the effects of missense mutations in coding regions in each haplotype based on the conservation of amino acid residues and obtained the effects of 918848 non-redundant missense GVs.Furthermore,we generated high-quality chromatin accessibility(CA)data from six representative rice tissues and used these data to train deep convolutional neural network models to predict the impacts of 5067405 GVs for CA in regulatory regions.We characterized the functional properties and tissue specificity of the GV effects and found that large-effect GVs in coding and regulatory regions may be subject to selection in different directions.Finally,we demonstrated how the functional impact map could be used to prioritize causal variants in mapping populations.This impact map will be a useful resource for accelerating gene cloning and functional studies in rice,and can be freely queried in RiceVarMap V2.0(http://gffzz90f9113514c343b0hw590pbovnf956w0o.ffgz.tsg.suse.edu.cn). | Hu Zhao Jiacheng Li Ling Yang Gang Qin Chunjiao Xia Xingbing Xu Yangmeng Su Yinmeng Liu Luchang Ming Ling-Ung Chen Lizhong Xiong Weibo Xie | 2021 | Molecular Plant2021，14，9： | 3 |
| 2 | Toll-like receptors 2 and 4 mediate the capacity of mesenchymal stromal cells to support the proliferation and differentiation of CD34 + cells显示文摘 | Xingbing Wang Qiansong Cheng Lailing Li Jian Wang Liang Xia Xiucai Xu Zimin Sun | 2011 | Experimental Cell Research2011，，3： | 2 |
| 3 | Gastrin attenuates sepsis-induced myocardial dysfunction by down-regulation of TLR4 expression in macrophages显示文摘Myocardial dysfunction is the most serious complication of sepsis.Sepsis-induced myocardial dysfunction(SMD)is often associated with gastrointestinal dysfunction,but its pathophysiological significance remains unclear.The present study found that patients with SMD had higher plasma gastrin concentrations than those without SMD.In mice,knockdown of the gastrin receptor,cholecystokinin B receptor(Cckbr),aggravated lipopolysaccharide(LPS)-induced cardiac dysfunction and increased inflammation in the heart,whereas the intravenous administration of gastrin ameliorated SMD and cardiac injury.Macrophage infiltration plays a significant role in SMD because depletion of macrophages by the intravenous injection of clodronate liposomes,48 h prior to LPS administration,alleviated LPSinduced cardiac injury in Cckbr-deficient mice.The intravenous injection of bone marrow macrophages(BMMs)overexpressing Cckbr reduced LPS-induced myocardial dysfunction.Furthermore,gastrin treatment inhibited toll-like receptor 4(TLR4)expression through the peroxisome proliferator-activated receptor a(PPAR-a)signaling pathway in BMMs.Thus,our findings provide insights into the mechanism of the protective role of gastrin/CCKBR in SMD,which could be used to develop new treatment modalities for SMD. | Dandong Fang Yu Li Bo He Daqian Gu Mingming Zhang Jingwen Guo Hongmei Ren Xinyue Li Ziyue Zhang Ming Tang Xingbing Li Donghai Yang Chunmei Xu Yijie Hu Hongyong Wang Pedro AJose Yu Han Chunyu Zeng | 2023 | Acta Pharmaceutica Sinica B2023，13，9： | 1 |
| 4 | Progress of electrochemical capacitor electrode materials: A review显示文摘 | Yong Zhang Hui Feng Xingbing Wu Lizhen Wang Aiqin Zhang Tongchi Xia Huichao Dong Xiaofeng Li Linsen Zhang | 2009 | International Journal of Hydrogen Energy2009，，11： | 1 |
| 5 | Generalized shock models based on a cluster point process 显示文摘 | BAI Jianming LI Zehui KONG Xingbing | 2006 | IEEE Transactions on Reliability2006，55，3： | 1 |
| 6 | Life behavior of δ-shock model显示文摘 | LI Zehui KONG Xingbing | 2007 | Statistics & Probability Letters2007，77，6： | 1 |
| 7 | Fixation of hybrid sterility genes and favorable alleles of key yield-related genes with dominance contribute to the high yield of the Yongyou series of intersubspecific hybrid rice显示文摘In rice,the Yongyou series of Xian-Geng intersubspecific hybrids have excellent production performance,as shown by their extremely high yield.However,the mechanisms underlying the success of these rice hybrids are unclear.In this study,three F2 populations are generated from three Yongyou hybrids to determine the genetic basis of the extremely high yield of intersubspecific hybrids.Genome constitution analysis reveals that the female and male parental lines belong to the Geng and Xian subspecies,respectively,although introgression of 20%of the Xian ancestry and 14%of the Geng ancestry are observed.Twenty-five percent of the hybrid genomes carries homozygous Xian or Geng fragments,which harbors hybrid sterility genes such as Sd,Sc,f5,and q S12 and favorable alleles of key yield-related genes,including NAL1,Ghd7,and Ghd8.None of the parents carries the S5+killer of the S5 killer-protector system.Compatible allele combinations of hybrid sterility genes ensure the fertility of these intersubspecific hybrids and overcome the bottleneck in applying intersubspecific hybrids.Additive effects of favorable alleles of yield-related genes fixed in both parents enhances midparent values.Many QTLs for yield and its key component spikelets per panicle shows dominance and the net positive dominant effects lead to heterosis.These factors result in an extremely high yield of the hybrids.These findings will aid in the development of new intersubspecific rice hybrids with diverse genetic backgrounds. | Pengfei Wang Feixiang Qi Honglin Yao Xingbing Xu Wenjun Li Jianghu Meng Qinglu Zhang Weibo Xie Yongzhong Xing | 2022 | Journal of Genetics and Genomics2022，49，5： | 1 |
| 8 | Surface modification of PVDF hollow fiber membrane and its applicationin membrane aerated biofilm reactor (MABR)显示文摘 | Hou F F Li t~ A XingB H etal | 2013 | Biore- source Technol2013，140，： | 1 |
| 9 | Effects of Hot Wire Temperature on Properties of GeSi:H Films with High Hydrogen Dilution by Hot-Wire Chemical Vapor Deposition显示文摘GeSi:H films are prepared by hot-wire chemical vapor deposition(CVD) with high hydrogen dilution, DH=98%. Effects of hot wire temperature(Tw) on deposition rate, structural properties and bandgap of GeSi:H films are studied with surface profilemeter, Raman spectroscopy, Fourier transformed infrared spectroscopy, and UV-VIS-NIR spectrophotometer. It is found that the deposition rate(Rd) goes up with increasing of Tw, but increasing rate of Rd declines when Tw≥1 550 ℃. High Tw is beneficial to the formation of Ge-Si, but it has little effect on relative contents of the hydrogen bonds(Ge-H, Si-H, etc.) in the films. In the Tw range of 1 400-1 850 ℃, the maximum bandgap of the GeSi:H films is 1.39 eV at Tw =1 450 ℃ and the band gap decreases with Tw increasing when Tw≥1 450 ℃. | TAI Xin LI Xingbing ZHEN Huang SHEN Honglie LI Yufang HUANG Haibin | 2019 | Wuhan University Journal of Natural Sciences2019，24，5： | 0 |
| 10 | Low-field NMR application in the characterization of CO_(2)geological storage and utilization related to shale gas reservoirs:a brief review显示文摘CO_(2)geological storage and utilization(CGSU)is considered a far-reaching technique to meet the demand of increasing energy supply and decreasing CO_(2)emissions.For CGSUs related to shale gas reservoirs,experimental investigations have attracted variable methodologies,among which low-field NMR(LF-NMR)is a promising method and is playing an increasingly key role in reservoir characterization.Herein,the application of this nondestructive,sensitive,and quick LF-NMR technique in characterizing CGSU behavior in shale gas reservoirs is reviewed.First,the basic principle of LF-NMR for 1H-fluid detection is introduced,which is the theoretical foundation of the reviewed achievements in this paper.Then,the reviewed works are related to the LF-NMR-based measurements of CH_(4)adsorption capacity and the CO_(2)-CH_(4)interaction in shale,as well as the performance on CO_(2)sequestration and simultaneous enhanced gas recovery from shale.Basically,the reviewed achievements have exhibited a large potential for LF-NMR application in CGSUs related to shale gas reservoirs,although some limitations and deficiencies still need to be improved.Accordingly,some suggestions are proposed for a more responsible development of the LF-NMR technique.Hopefully,this review is helpful in promoting the expanding application of the LF-NMR technique in CGSU implementation in shale gas reservoirs. | Zhaohui LU Ke LI Xingbing LIU Peng ZHAO Jun LIU | 2023 | Frontiers of Earth Science2023，17，3： | 0 |
| 11 | An error analysis and optimization method for combined measurement with binocular vision显示文摘The accurate measurement of surfaces of large aviation components is vital for the assessment of manufacturing and assembly quality of such components.To satisfy the measurement requirement of large-size components,most current researches pay more attention to combined measurement methods utilizing different measuring instruments,but the related researches on error analysis and optimization methods are not taken enough attention.This paper proposes a combined laser-assisted measurement method with feature enhancement techniques,and it also develops an error propagation model of the main factors affecting the overall measurement error in detail.Firstly,the surface of a large-size component is measured by the measurement system at multiple stations.Secondly,a control point coordinate system is established as a bridge to unify all local measurement data into the global coordinate system.To improve the overall measurement accuracy,the pixel extraction error as a key factor causing the overall measurement error is analyzed in detail.Next,the error propagation model is established,and some optimization strategies of layout for minimizing measurement error and transformation error are researched.Finally,experiments are carried out to verify the effectiveness of the proposed method.The results show that the measurement error of the proposed method reaches 0.073%and 0.14%with a 1 D standard ruler and a flat plate,respectively. | Yongkang LU Wei LIU Yang ZHANG Junqing LI Weiqi LUO Yanze ZHANG Hongwen XINGb Lei ZHANG | 2021 | Chinese Journal of Aeronautics2021，34，10： | 0 |
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