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| 1 | Genetic dissection of a thousand-grain weight quantitative trait locus on rice chromosome 1显示文摘Thousand-grain weight (TGWT) is an important factor affecting grain yield as well as grain quality in rice. A quantitative trait locus (QTL) qTGWT1-1 for TGWT was detected previously near DNA marker RG532 on the short arm of chromosome 1 in a recombinant inbred line (RIL) population derived from the indica-indica rice cross Zhengshan97B (ZS97B)/Milyang46 (MY46). In this study, two residual het-erozygous lines (RHLs), Ch1 and Ch2, derived from the ZS97B/MY46 RIL F7 population, were used to develop two F6 populations, RIL-1 and RIL-2. The genome of Ch1 and Ch2 contains a heterozygous region flanked by RM1―RM3746 and RM151―RM243 on the short arm of chromosome 1, respectively, but is homozygous in other regions. Two tightly linked QTLs, Gw1-1 and Gw1-2, with the same additive direction and similar effect on TGWT, were detected in the region of QTL qTGWT1-1 in population RIL-2. No QTL was detected in the population RIL-1. Four individual RHLs from the population RIL-2 carrying heterozygous segments flanked by RM151―RM10404, RM10381―RM243, RM10435―RM259 and RM10398―RM5359, respectively, were chosen to develop four F2 populations. Ten maternal homozy-gotes and 10 paternal homozygotes were selected from each of the four F2 populations derived from the four RHLs. The four sets of near isogenic lines (NILs) were grown for phenotyping of TGWT and delimitation of Gw1-1 and Gw1-2. Results showed that Gw1-1 and Gw1-2 were located in the intervals RM10376―RM10398 and RM10404―RM1344 which cover 392.9 and 308.5 kb regions, respectively. The enhancing alleles were from ZS97B at both loci, and no significant interactions were detected. Genetic dissection of Gw1-1 and Gw1-2 has laid a foundation for their cloning and molecular breeding of grain yield and quality in rice. | YU ShouWu YANG ChangDeng FAN YeYang ZHUANG JieYun LI XiMing | 2008 | Chinese Science Bulletin2008，53，15： | 5 |
| 2 | Transcriptome analysis of CD4^(+)T cells from HIV-infected individuals receiving ART with LLV revealed novel transcription factors regulating HIV-1 promoter activity显示文摘Some HIV-infected individuals receiving ART develop low-level viremia(LLV),with a plasma viral load of 50-1000 copies/mL.Persistent low-level viremia is associated with subsequent virologic failure.The peripheral blood CD4^(+)T cell pool is a source of LLV.However,the intrinsic characteristics of CD4^(+)T cells in LLV which may contribute to low-level viremia are largely unknown.We analyzed the transcriptome profiling of peripheral blood CD4^(+)T cells from healthy controls(HC)and HIV-infected patients receiving ART with either virologic sup-pression(VS)or LLV.To identify pathways potentially responding to increasing viral loads from HC to VS and to LLV,KEGG pathways of differentially expressed genes(DEGs)were acquired by comparing VS with HC(VS-HC group)and LLV with VS(LLV-VS group),and overlapped pathways were analyzed.Characterization of DEGs in key overlapping pathways showed that CD4^(+)T cells in LLV expressed higher levels of Th1 signature transcription factors(TBX21),toll-like receptors(TLR-4,-6,-7 and-8),anti-HIV entry chemokines(CCL3 and CCL4),and anti-IL-1βfactors(ILRN and IL1R2)compared to VS.Our results also indicated activation of the NF-κB and TNF signaling pathways that could promote HIV-1 transcription.Finally,we evaluated the effects of 4 and 17 tran-scription factors that were upregulated in the VS-HC and LLV-VS groups,respectively,on HIV-1 promoter activity.Functional studies revealed that CXXC5 significantly increased,while SOX5 markedly suppressed HIV-1 tran-scription.In summary,we found that CD4^(+)T cells in LLV displayed a distinct mRNA profiling compared to that in VS,which promoted HIV-1 replication and r+eactivation of viral latency and may eventually contribute to virologic failure in patients with persistent LLV.CXXC5 and SOX5 may serve as targets for the development of latency-reversing agents. | Jingliang Chen Yaozu He Huolin Zhong Fengyu Hu Yonghong Li Yeyang Zhang Xia Zhang Weiyin Lin Quanmin Li Feilong Xu Shaozhen Chen Hui Zhang Weiping Cai Linghua Li | 2023 | Virologica Sinica2023，38，3： | 0 |
| 3 | The Short-Term Prediction ofWind Power Based on the Convolutional Graph Attention Deep Neural Network显示文摘The fluctuation of wind power affects the operating safety and power consumption of the electric power grid and restricts the grid connection of wind power on a large scale.Therefore,wind power forecasting plays a key role in improving the safety and economic benefits of the power grid.This paper proposes a wind power predicting method based on a convolutional graph attention deep neural network with multi-wind farm data.Based on the graph attention network and attention mechanism,the method extracts spatial-temporal characteristics from the data of multiple wind farms.Then,combined with a deep neural network,a convolutional graph attention deep neural network model is constructed.Finally,the model is trained with the quantile regression loss function to achieve the wind power deterministic and probabilistic prediction based on multi-wind farm spatial-temporal data.A wind power dataset in the U.S.is taken as an example to demonstrate the efficacy of the proposed model.Compared with the selected baseline methods,the proposed model achieves the best prediction performance.The point prediction errors(i.e.,root mean square error(RMSE)and normalized mean absolute percentage error(NMAPE))are 0.304 MW and 1.177%,respectively.And the comprehensive performance of probabilistic prediction(i.e.,con-tinuously ranked probability score(CRPS))is 0.580.Thus,the significance of multi-wind farm data and spatial-temporal feature extraction module is self-evident. | Fan Xiao Xiong Ping Yeyang Li Yusen Xu Yiqun Kang Dan Liu Nianming Zhang | 2024 | Energy Engineering2024，121，2： | 0 |
| 4 | Protein amyloid aggregate:Structure and function显示文摘Protein amyloid aggregation has been widely observed to occur and plays impor-tant roles in both physiological processes and pathological diseases.Remarkably,amyloid aggregates assembled by native proteins gain a variety of different biolog-ical activities,which cannot be adopted by the unassembled protein alone.Thus,it is important to investigate the molecular basis of self-assembly of protein amyloid aggregates and how the aggregated protein structure determines its function.In the review,wefirstly introduce our structural knowledge on how different amyloid pro-teins undergo conformational transition and assemble into amyloid aggregate,with the main focus on amyloidfibril,which is the major species of amyloid aggregate.Then,we elaborate how different structures of amyloidfibrils enable them to fulfill highly diverse functions in either physiological or pathological condition.Further-more,we discuss the structural polymorph which is a very unique feature of amyloidfibril,and its implication in understanding the structure-function relationship of amy-loidfibrils.Finally,we point out the importance of applying and integrating new approaches for deepening the structure-function study of amyloidfibrils and high-light the potential of designing amyloidfibril-based functional bio-nanomaterials for application. | Qianhui Xu Yeyang Ma Yunpeng Sun Dan Li Xin Zhang Cong Liu | 2023 | Aggregate2023，4，4： | 0 |
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