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| 1 | A draft sequence of the rice (Oryza sativa ssp. indica) genome显示文摘The sequence of the rice genome holds fundamental information for its biology, including physiology, genetics, development, and evolution, as well as information on many beneficial phenotypes of economic significance. Using a 'whole genome shotgun' approach, we have pro-duced a draft rice genome sequence of Oryza sativa ssp. in-dica, the major crop rice subspecies in China and many other regions of Asia. The draft genome sequence is constructed from over 4.3 million successful sequencing traces with an accumulative total length of 2214.9 Mb. The initial assembly of the non-redundant sequences reached 409.76 Mb in length, based on 3.30 million successful sequencing traces with a total length of 1797.4 Mb from an indica variant cultivar 93-11, giving an estimated coverage of 95.29% of the rice genome with an average base accuracy of higher than 99%. The coverage of the draft sequence, the randomness of the sequence distribution, and the consistency of BIG-ASSEM-BLER, a custom-designed software package | YU Jun, HU Songnian, WANG Jun,LI Songgang WONG Ka-Shu Gane, LIU Bin,DENG Yajun, DAI Li, ZHOU Yan,ZHANG Xiuqing, CAO Mengliang, LIU Jing,SUN Jiandong , TANG Jiabin, CHEN Yanjiong,HUANG Xiaobing, LIN Wei, YE Chen, TONG Wei,CONG Lijuan, GENG Jianing, HAN Yujun, LI Lin,LI Wei, HU Guangqiang, HUANG Xiangang,LI Wenjie, LI Jian, LIU Zhanwei, LI Long,LIU Jianping, Ql Qiuhui, LIU Jinsong, LI Li,WANG Xuegang, LU Hong, WU Tingling,ZHU Miao, Nl Peixiang, HAN Hua, DONG Wei,REN Xiaoyu, FENG Xiaoli, GUI Peng,LI Xianran, WANG Hao, XU Xin, ZHAI Wenxue,XU Zhao, ZHANG Jinsong, HE Sijie,ZHANG Jianguo, XU Jichen, ZHANG Kunlin,ZHENG Xianwu, DONG Jianhai, ZENG Wanyong,TAO Lin, CHEN Xuewei, HE Jun, LIU Daofeng,TIAN Wei, TIAN Chaoguang, XIA Hongai,LI Gang, GAO Hui, LI Ping, CHEN Wei ,WANG Xudong, ZHANG Yong, HU Jianfei,WANG Jing, LIU Song, YANG Jian,ZHANG Guangyu, XIONG Yuqing, LI Zhijie,MAO Long, ZHOU Chengshu, ZHU Zhen,CHEN Runsheng, HAO Bailin,ZHENG Weimou, CHEN Shouyi, QUO Wei,LI Guojie, LIU Siqi, HUANG Guyang,TAO Ming, WANG Jian, ZHU Lihuang,YUAN Longping& YANG HuanmingBeijing Genomics Institute/Center of Genomics & Bioinformatics, Chinese Academy of Sciences, Beijing 101300, China Hangzhou Genomics Institute/Institute of Bioinformatics of Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China Institute of Genetics, Chinese Academy of Sciences, Beijing 100101, China National Hybrid Rice R & D Center, Changsha 410125, China Laboratory of Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China College of Life Sciences, Peking University, Beijing 100871, China Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 1Q0080, China Digital China Ltd., Beijing 100080, China Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China Medical College, Xi’an Jiaotong University, Xi’an 710061, ChinaThese authors contributed equally to this work.Corresponding author.Corresponden | 2001 | Chinese Science Bulletin2001，46，23： | 6 |
| 2 | Three-dimensionally ordered, ultrathin graphitic-carbon frameworks with cage-like mesoporosity for highly stable Li-S batteries显示文摘Mesoporous 碳广泛地为锂硫(Li-S ) 作为硫主人被利用了电池。设计碳主人的孔,墙厚度,和 graphitization 度的能力为处理妨碍 Li-S 电池的商品化的问题是必要的,例如快能力腐烂和差的高率的性能。在这个工作,高度订了,有唯一的像笼子的 mesoporosity 的 ultrathin mesoporous graphitic 碳框架(MGF ) ,源于自我装配的 Fe 3 O 4 nanoparticle 超点阵,被表明是为包含硫的一位优秀主人。产生 S@MGFs 展览高度特定的能力(1,446 mAh?? | Huijuan Yu Hanwen Li Shouyi Yuan Yuchi Yang Jiahui Zheng Jianhua Hu Dong Yang YonggangWang Angang Dong | 2017 | Nano Research2017，10，7： | 5 |
| 3 | Exploration of presence/absence variation and corresponding polymorphic markers in soybean genome显示文摘This study was designed to reveal the genome‐wide distribution of presence/absence variation(PAV) and to establish a database of polymorphic PAV markers in soybean. The 33 soybean whole‐genome sequences were compared to each other with that of Williams 82 as a reference genome. A total of 33,127 PAVs were detected and 28,912 PAV markers with their primer sequences were designed as the database NJAUSoyPAV_1.0. The PAVs scattered on whole genome while only 518(1.8%) overlapped with simple sequence repeats(SSRs) in BARCSOYSSR_1.0database. In a random sample of 800 PAVs, 713(89.13%) showed polymorphism among the 12 differential genotypes. Using 126 PAVs and 108 SSRs to test a Chinese soybean germplasm collection composed of 828 Glycine soja Sieb. et Zucc. and Glycine max(L.) Merr. accessions, the per locus allele number and its variation appeared less in PAVs than in SSRs. The distinctness among alleles/bands of PCR(polymerase chain reaction) products showed better in PAVs than in SSRs, potential in accurate marker‐assisted allele selection. The association mapping results showed SSR t PAV was more powerful than any single marker systems.The NJAUSoyPAV_1.0 database has enriched the source of PCR markers, and may fit the materials with a range of per locus allele numbers, if jointly used with SSR markers. | Yufeng Wang Jiangjie Lu Shouyi Chen Liping Shu Reid G.Palmer Guangnan Xing Yan Li Shouping Yang Deyue Yu Tuanjie Zhao Junyi Gai | 2014 | Journal of Integrative Plant Biology2014，56，10： | 5 |
| 4 | Mapping Quantitative Trait Loci Associated with Aluminum Toxin Tolerance in NJRIKY Recombinant Inbred Line Population of Soybean (Glycine max)显示文摘To investigate the genetic mechanism of Al-tolerance in soybean, a recombinant inbred line population (RIL) with 184 F2:7:11 lines derived from the cross of Kefeng No.1 × Nannong 1138-2 (Al-tolerant × Al-sensitive) were tested in pot experiment with sand culture medium in net room in Nanjing. Four traits, i.e. plant height, number of leaves, shoot dry weight and root dry weight at seedling stage, were evaluated and used to calculate the average membership index (FAi) as the indicator of Al-tolerance. The composite interval mapping (CIM) under WinQTL Cartographer v. 2.5 detected five QTLs (i.e. qFAi-1, qFAi- 2, qFAi-3, qFAi-4 and qFAi-5), explaining 5.20%-9.07% of the total phenotypic variation individually. While with the multiple interval mapping (MIM) of the same software, five QTLs (qFAi-1, qFAi-5, qFAi-6, qFAi-7, and qFAi-8) explaining 5.7%-24.60% of the total phenotypic variation individually were mapped. Here qFAi-1 and qFAi-5 were detected by both CIM and MIM with the locations in a same ?anking marker region, GMKF046-GMKF080 on B1 and satt278-sat_95 on L, respectively. While qFAi-2 under CIM and qFAi-6 under MIM both on D1b2 were located in neighboring regions with their confidence intervals overlapped and might be the same locus. Segregation analysis under major gene plus polygene inheritance model showed that Al-tolerance was controlled by two major genes (h2mg = 33.05%) plus polygenes (h2pg = 52.73%). Both QTL mapping and segregation analysis confirmed two QTLs responsible for Al-tolerance with relatively low heritability, and there might be a third QTL, confounded with the polygenes in segregation analysis. | Bo Qi Paul Korir Tuanjie Zhao Deyue Yu Shouyi Chen Junyi Gai | 2008 | Journal of Integrative Plant Biology2008，50，9： | 4 |
| 5 | Stepwise prediction and statistical screening:B-cell epitopes on neuraminidase of human avian H_5N_1 virus显示文摘The B-cell epitopes of virus are associated with the antiviral drug and the vaccine screening. As the nucleotide sequences of neuraminidase (NA) of stain GD-01-06 were sequenced, we predicted the α-helix and β-fold structure and the indexes of the flexible regions of secondary structure of NA with methods of the Hydrophilicity plot by Kyte-Doolittle, the Surface probability plot by Emini and the Antigenic index by Jameson-Wolf, and then screened statistically the parameters to predict B-cell epitopes by the Hierarchical cluster and the Bivariate correlation and the quartiles with SPSS 13.0. The impact of variation of amino acids in NA on its epitopes was analyzed. The predictive results were evaluated by Wu’s Antigenic Index and SWISS-MODEL. We found that the most possible epitopes on NA were located within or nearby its N-terminal Nos. 120―137, 81―84, 408―415, 273―282, 429―432, 356―368, 46―55, 146―155, 341―350 and 198―209, which were the dominant regions of NA epitopes. Peptide 120―137 including the glycoprotein domain (NGT126―128) was first chosen as the B-cell epitopes on NA. NA in H5N1 strain isolated after 2003 lacked in No. 53 amino acid (I), resulting in an increase in the surface flexible region of NA in GD-01-06 and an enlargement to their epitope regions (VEP46―48→ VEPISNTNFL46―55). Conclusively, prediction of the B-cell epitopes on the NA based on multiple parameters is useful for researches on the molecular immunology and drug screening and immuno-prophylaxis. A deletion of No. 53 amino acid (I) in NA in strain GD-01-06 might increase its antigenicity. | HUANG Ping YU ShouYi KE ChangWen | 2008 | Chinese Science Bulletin2008，53，23： | 4 |
| 6 | Memristive network-based genetic algorithm and its application to image edge detection显示文摘This paper proposes a mem-computing model of memristive network-based genetic algorithm(MNGA)by building up the relationship between the memristive network(MN)and the genetic algorithm(GA),and a new edge detection algorithm where image pixels are defined as individuals of population.First,the computing model of MNGA is designed to perform mem-computing,which brings new possibility of the hardware implementation of GA.Secondly,MNGA-based edge detection integrating image filter and GA operator deployed by MN is proposed.Finally,simulation results demonstrate that the figure of merit(FoM)of our model is better than the latest memristor-based swarm intelligence.In summary,a new way is found to build proper matching of memristor to GA and aid image edge detection. | YU Yongbin YANG Chenyu DENG Quanxin NYIMA Tashi LIANG Shouyi ZHOU Chen | 2021 | Journal of Systems Engineering and Electronics2021，32，5： | 2 |
| 7 | Targeting integrins in hepatocellular carcinoma显示文摘 | Yanhua Wu Xiaojing Qiao Shouyi Qiao Long Yu | 2011 | Expert Opinion on Therapeutic Targets2011，，4： | 1 |
| 8 | DESIGN AND IMPLEMENTATION OF COMPLETELY AUTOMATIC AND CONTINUAL PRODUCTION LINE FOR WATER-IN-OIL(W/O) EMULSION EXPLOSIVE显示文摘1INTRODUCTIONExplosiveisoneofthetremendousenergyresourceswhichpeopleoftenutilize.Itisnotonlyusedinmilitarypurposes,butalsous... | He, Jianjun Yu, Shouyi Gui, Weihua | 1999 | 中国有色金属学会会刊:英文版1999，9，2： | 1 |
| 9 | Servo-motor transmission control system for Low-E glass production line显示文摘 | Yu Shouyi Li Chen | 2012 | Journal of Central South University (Science and Technology)2012，43，1： | 1 |
| 10 | Evolutionary parallel local search for function optimization 显示文摘 | GUO Guanqi YU Shouyi | 2003 | IEEE Trans on System Man and Cybernetics Part B2003，33，6： | 1 |
| 11 | A randomized controlled trial of low-dose recombinant human interferons α-2b nasal spray to prevent acute viral respiratory infections in military recruits显示文摘 | LuLu Gao Shouyi Yu Qing Chen Zhaojun Duan Jie Zhou Chen Mao Dexian Yu Wenchang Zhu Jun Nie Yunde Hou | 2010 | Vaccine2010，，28： | 1 |
| 12 | Evolutionary parallel local search for function optimization 显示文摘 | GUO Guanqi YU Shouyi | 2003 | IEEE Trans on System Man and Cybernetics Part B2003，33，6： | 1 |
| 13 | Class 1 integron gene cassettes in multidrug-resistant Gram-negative bacteria in southern China显示文摘 | Kuihai Wu Fengping Wang Jingjing Sun Qian Wang Qing Chen Shouyi Yu Yongyu Rui | 2012 | International Journal of Antimicrobial Agents2012，，3： | 1 |
| 14 | Molecular cloning and characterization of eDNA encoding a ubiquitin-conjugating enzyme from clonorchis sinensis 显示文摘 | SONG Linxia CHEN Shouyi YU Xinbing | 2004 | Parasitol Res2004，94，： | 1 |
| 15 | Evolutionary parallel local search for function optimization显示文摘 | Guo Guanqi Yu Shouyi | 2003 | IEEE Trans on Systems Man & Cybernetics2003，33，6： | 1 |
| 16 | SYSTEM IDENTIFICATION USING DYNAMIC GA BASED ON NUMERIC ENCODING显示文摘A dynamic genetic algorithms based on numeric encoding is proposed and its application in system identification is discussed. Simulation shows that the introduction of both numeric encoding and dynamic mutation can effectively improve the accuracy and speed of searching for the optimum. It also show that the improved Genetic algorithm can identify time delay and parameters of the plant at the same time and converge to globle optimization. | Yu Shouyi Peng Ying Zheng Xiaoming (College of Information Engineering, Central South University of Technology, Changsha 410083, China) | 1997 | Journal of Central South University1997，9，2： | 0 |
| 17 | Emerging roles of circular RNAs in the invasion and metastasis of head and neck cancer:Possible functions and mechanisms显示文摘Head and neck cancer(HNC)is the seventh most prevalent malignancy worldwide in 2020.Cancer metastasis is the main cause of poor prognosis in HNC patients.Recently,circular RNAs(circRNAs),initially thought to have no biological function,are attracting increasing attention,and their crucial roles in mediating HNC metastasis are being extensively investigated.Existing studies have shown that circRNAs primarily function through miRNA sponges,transcriptional regulation,interacting with RNA-binding proteins(RBPs)and as translation templates.Among these functions,the function of miRNA sponge is the most prominent.In this review,we summarized the reported circRNAs involved in HNC metastasis,aiming to elucidate the regulatory relationship between circRNAs and HNC metastasis.Furthermore,we summarized the latest advances in the epidemiological information of HNC metastasis and the tumor metastasis theories,the biogenesis,characterization and functional mechanisms of circRNAs,and their potential clinical applications.Although the research on circRNAs is still in its infancy,circRNAs are expected to serve as prognostic markers and effective therapeutic targets to inhibit HNC metastasis and significantly improve the prognosis of HNC patients. | Shouyi Tang Luyao Cai Zhen Wang Dan Pan Qing Wang Yingqiang Shen Yu Zhou Qianming Chen | 2023 | Cancer Innovation2023，2，6： | 0 |
| 18 | COMPUTER CONTROL SYSTEM FOR DRAWING MACHINE IN HORIZONTAL CONTINUOUS CAST SET显示文摘A computer control system for drawing machine in horizontal continuous cast set was introduced.The operation features of the drawing machine were analyzed»the hardware configuration and principles of interface circuit for stroke measurements were given out.An effective method was provided,which made the process parameters progressively optimize under the software environment using friendly interface of person-and-computer communication.This method was also adaptable to optimize parameters of other production process which are hard to model. | Zheng Xiaoming Yu Shouyi | 1996 | Transactions of Nonferrous Metals Society of China1996，6，1： | 0 |
| 19 | Mitigating the Jahn-Teller distortion driven by the spin-orbit coupling of lithium manganate cathode显示文摘Spinel LiMn_(2)O_(4)is recognized as one of the most competitive cathode candidates for lithium-ion batteries ascribed to environmentally benign and rich sources.However,the wholesale application of LiMn_(2)O_(4)is predominately plagued by its severe capacity degradation,mainly associated with the innate Jahn-Teller effect.Herein,single-crystalline LiMn_(2)O_(4)with Eu^(3+) doping is rationally designed to mitigate the detrimental Jahn-Teller distortion by tuning the chemical environment of MnO_(6) octahedra and accommodating localized electron,based on the unique aspheric flexible 4f electron orbit of rare-earth metal ions.Notably,the stretching of MnO_(6) octahedron stemmed from the Jahn-Teller effect in Eu-doped LiMn_(2)O_(4)is effectively suppressed,confirmed by theoretical calculation.Meanwhile,the structural stability of the material has been significantly enhanced due to the robust Mn–O band coherency and weakened phase transition,proved by synchrotron radiation absorption spectrum and operando X-ray diffraction.The corresponding active cathode manifests superior long-cycle stability after 300 loops at 2C and displays only a 0.011%capacity drop per cycle even at 5C.Given this,this modification tactic sheds new light on achieving superior long-cycle performances by suppressing distortion in various cathode materials. | Shu Zhang Hongyi Chen Jun Chen Shouyi Yin Yu Mei Lianshan Ni Andi Di Wentao Deng Guoqiang Zou Hongshuai Hou Xiaobo Ji | 2022 | Journal of Energy Chemistry2022，31，9： | 0 |
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