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| 1 | Inferring the Tree of Life of the order Cypriniformes, the earth's most diverse clade of freshwater fishes: Implications of varied taxon and character sampling显示文摘The phylogenetic relationships of species are fundamental to any biological investigation, including all evolutionary studies. Accurate inferences of sister group relationships provide the researcher with an historical framework within which the attributes or geographic origin of species (or supraspecific groups) evolved. Taken out of this phylogenetic context, interpretations of evolutionary processes or origins, geographic distributions, or speciation rates and mechanisms, are subject to nothing less than a biological experiment without controls. Cypriniformes is the most diverse clade of freshwater fishes with estimates of diversity of nearly 3,500 species. These fishes display an amazing array of morphological, ecological, behavioral, and geographic diversity and offer a tremendous opportunity to enhance our understanding of the biotic and abiotic factors associated with diversification and adaptation to environments. Given the nearly global distribution of these fishes, they serve as an important model group for a plethora of biological investigations, including indicator species for future cli-matic changes. The occurrence of the zebrafish, Danio rerio, in this order makes this clade a critical component in understanding and predicting the relationship between mutagenesis and phenotypic expressions in vertebrates, including humans. With the tremendous diversity in Cypriniformes, our understanding of their phylogenetic relationships has not proceeded at an acceptable rate, despite a plethora of morphological and more recent mo-lecular studies. Most studies are pre-Hennigian in origin or include relatively small numbers of taxa. Given that analyses of small numbers of taxa for molecular characters can be compromised by peculiarities of long-branch attraction and nodal-density effect, it is critical that significant progress in our understanding of the relationships of these important fishes occurs with increasing sampling of species to mitigate these potential problems. The recent Cypriniformes Tree of Life initiative is an effort to achieve this goal with morphological and molecular (mitochondrial and nuclear) data. In this early synthesis of our understanding of the phylogenetic relationships of these fishes, all types of data have contributed historically to improving our understanding, but not all analyses are complementary in taxon sampling, thus precluding direct understanding of the impact of taxon sampling on achieving accurate phylogenetic inferences. However, recent molecular studies do provide some insight and in some instances taxon sampling can be implicated as a variable that can influence sister group relationships. Other instances may also exist but without inclusion of more taxa for both mitochondrial and nuclear genes, one cannot distinguish between inferences being dictated by taxon sampling or the origins of the molecular data. | Richard L. MAYDEN Kevin L. TANG Robert M. WOOD Wei-Jen CHEN Mary K. AGNEW Kevin W. CONWAY Lei YANG Andrew M. SIMONS Henry L. BART Phillip M. HARRIS Junbing LI Xuzhen WANG Kenji SAITOH Shunping HE Huanzhang LIU Yiyu CHEN Mutstmi NISHIDA Masaki MIYA | 2008 | 植物分类学报2008，46，3： | 5 |
| 2 | Hedgehog signaling downregulates Suppressor of Fused through the HIB/SPOP-Crn axis in Drosophila显示文摘发信号的刺猬(Hh ) 在动物开发和组织动态平衡起重要作用,并且它的错误规定引起先天的疾病和癌症的几种类型。Suppressor (苏(fu )) Hh 的一个保存禁止的部件正在表明小径熔化,但是它怎么被调整,仍然保持糟糕理解。这里,我们证明在果蝇,发信号的 Hh 通过它的目标蛋白质 HIB (导致 Hh 的 BTB 蛋白质) 支持苏(fu ) 的 downregulation。有趣地,尽管苏(fu ) 的调停 HIB 的 downregulation 取决于 E3 ubiquitin ligase Cul3, HIB 直接不调整苏(fu ) 蛋白质稳定性。通过一幅基于 RNAi 的候选人基因屏幕,我们识别 spliceosome 因素歪颈(Crn ) 作为苏(fu ) 的一个管理者水平。Epistasis 分析通过 Crn 显示那 HIB downregulates 苏(fu ) 。而且,我们提供 HIB 在原子核保留 Crn 的证据,导致减少的苏(fu ) 蛋白质水平。最后,我们显示出那 SPOP, HIB 的哺乳动物的相当或相同事物,到 downregulate 苏(fu ) 的代用品 HIB 能在果蝇铺平。我们的学习建议 Hh 通过它的目标 HIB 调整 Ci 和苏(fu ) 层次,因此揭开调整 Hh 信号 transduction 的新奇反馈机制。HIB 的双功能可以提供缓冲机制调整 Hh 小径活动。 | Chen Liu Zizhang Zhou Xia Yao Ping Chen Man Sun Miya Su Cunjie Chang Jun Yan Jin Jiang Qing Zhang | 2014 | Cell Research2014，24，5： | 2 |
| 3 | Highly deacetylated chitosan and itsproperties显示文摘 | MIMA S MIYA M IWAMOTO R | 1983 | J Applied Polymer Science1983，28，6： | 2 |
| 4 | Influence of Bacterial Extracellular Polymers on the Membrane Separation Activated Sludge Process 显示文摘 | Nagaoka H Veda S Miya A | 1996 | Wat Sci Tech1996，34，9： | 1 |
| 5 | Construction of Glutathione-Producing Strains of Escherichia coli B by Recombinant DNATechniques 显示文摘 | GUSHIMA H MIYA T | 1983 | Journal of applied biochemistry1983，5，： | 1 |
| 6 | Cadmium inhibition of hep- atic drug metabolism in the rat 显示文摘 | Hadley WM Miya TS Bousquet WF | 1974 | Toxicol Appl Pharmacol1974，28，2： | 1 |
| 7 | Use of Com- mercially Available Antimicrobial Compounds for Prevention of Listeria Monocytogenes Growth in Ready-to-eat Minced Tuna and Salmon Roe During Shelf Life显示文摘 | TAKAHASHI H KURAMOTO S MIYA S | 2011 | Journal of Food Protection2011，74，6： | 1 |
| 8 | Preoperative Ultrasonographic Examination for Lymph Node Metastasis: Usefulness when Designing Lymph Node Dissection for Papillary Microcarcinoma of the Thyroid显示文摘 | Yasuhiro Ito M.D. Ph.D. Chisato Tomoda M.D. Takashi Uruno M.D. Yuuki Takamura M.D. Akihiro Miya M.D. Kaoru Kobayashi M.D. Fumio Matsuzuka M.D. Kanji Kuma M.D. Akira Miyauchi M.D | 2004 | World Journal of Surgery2004，，5： | 1 |
| 9 | Influence of bacterial extracellular polymers on the membrane separation activated sludge process 显示文摘 | Nagaoka H Ueda S Miya A | 1996 | Water Science and Technology1996，34，9： | 1 |
| 10 | Modeling of Biofouling by Extracellular Polymers in a Membrane Separation Activated Sludge System 显示文摘 | Nagaoka H Yamanishi S Miya A | 1998 | W at Sci Tech1998，38，45： | 1 |
| 11 | Influence of bacterial extracellular polymers on the membrane separation activated sludge process 显示文摘 | Nagaoka H Ueda S Miya A | 1996 | WaterSciTechnol1996，34，9： | 1 |
| 12 | NDE of fatigue damages in austenitic stainless steel by measuring and inversion of damage induced magnetic field显示文摘 | Chen Z Aoto K Miya K | 2002 | Studies in Appl Electromagn Mech2002，23，： | 1 |
| 13 | Eddy-current testing by flexible microloop magnetic sensor array显示文摘 | Uesaka M Hakuta K Miya K | 1998 | IEEE Transactions on Magnetics1998，34，4： | 1 |
| 14 | Use of mitogenomic information in teleostean molecular phylogenetics:a tree-based ex- ploration under the maximum-parsimony optimality criterion显示文摘 | Miya M Nishida M | 2000 | Molecular Phylogenetics and Evolution2000，17，3： | 1 |
| 15 | A modeling of biofouling by extracellular polymers in a membrane separation actives sludge system显示文摘 | Nagaoka H Yamanishi S Miya | 1998 | Wat Sci Tech1998，38，45： | 1 |
| 16 | Complete mitochondrial DNA sequence of the swimming crab, Portunus trituberculatus (Crustacea: Decapoda: Brachyura) 显示文摘 | Yamauchi M M Miya M U Nishida M | 2003 | Gene2003，311，： | 1 |
| 17 | Synthesis and sensitivity of hexanitrohexaazaisowurtzitane显示文摘 | Hakobu Bazaki Shuichi Kawake Hiroshi Miya | 1998 | Propellants Explosives Pyrotechnics1998，23，4： | 1 |
| 18 | Interrelationships of the 11 gasterosteiform families (sticklebacks, pipefishes, andtheir relatives): a new perspective based on whole mitogenome sequences from 75 higher teleosts显示文摘 | KAWAHARA R MIYA M MABUCHI K | 2008 | Molecular Phylogenetics Evo-lution2008，46，1： | 1 |
| 19 | Memebrane separation activated sludge process 显示文摘 | Nagaoka H Ueda S Miya A | 1996 | Water Science and Technology1996，34，9： | 1 |
| 20 | Major patterns of higher teleostean phylogenies:a new perspective based on 100 complete mitochondrial DNA sequences显示文摘 | Miya M Takeshima H Endo H | 2003 | Mol Phyl Evol2003，26，1： | 1 |
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