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| 1 | 青海湖底沉积物的矿物物相及有机质保存研究显示文摘盐湖沉积环境是烃源岩发育的重要地质环境。本文以青海湖湖底沉积物为例,根据有机质与粘土矿物含量及矿物表面积的关系,分析了矿物学因素对盐湖相富有机质沉积物中有机质保存的影响。研究发现:湖底沉积物中有机质丰富,为上层水中的浮游生物和由河流携带来的陆地高等植物两种来源。矿物物相分析发现沉积物中粘土矿物含量达到32.4%,以伊利石为主。沉积物经密度分离后测试发现,有机碳含量与粘土矿物含量及矿物表面积之间具有很好的正相关性,说明粘土矿物吸附是青海湖底沉积物中有机质的主要赋存形式。 | 李善营 于炳松 Hailiang Dong 刘英超 | 2006 | 岩石矿物学杂志2006，25，6： | 13 |
| 2 | Fine-Tuning of MiR528 Accumulation Modulates Flowering Time in Rice显示文摘In plants,microRNA (miRNA) functions in the post-transcriptional repression of target mRNAs have been well explored.However,the mechanisms regulating the accumulation of miRNAs remain poorly under.stood.Here,we report that distinct mechanisms regulate accumulation of a monocot-specific miRNA,rice (Oryza sativa) miR528.At the transcriptional level,miR528 accumulated to higher levels in older plants than in young seedlings and exhibited aging-modulated gradual accumulation and diurnal rhythms in leaves;at the post-transcriptional level,aging also modulated miR528 levels by enhancing pri-miR528 alter.native splicing.We found that miR528 promotes rice flowering under long-day conditions by targeting RED AND FAR-RED INSENSITIVE2 (OsRFI2).Moreover,natural variations in the MIR528 promoter region caused differences in miR528 expression among rice varieties,which are correlated with their different binding affinities with the transcription factor OsSPL9 that activates the expression of miR528.Taken together,our findings reveal rice plants have evolved sophisticated modes fine-tuning miR528 levels and provide insight into the mechanisms that regulate MIRNA expression in plants. | Rongxin Yang Pingchuan Li Hailiang Mei Dong Wang Jing Sun Chao Yang Lili Hao Shouyun Cao Chengcai Chu Songnian Hu Xianwei Song Xiaofeng Cao | 2019 | Molecular Plant2019，12，8： | 12 |
| 3 | Co-occurrence of nitrite-dependent anaerobic methane oxidizing and anaerobic ammonia oxidizing bacteria in two Qinghai-Tibetan saline lakes显示文摘亚硝酸根依赖者厌氧氧化甲烷(n-damo ) 氧化的细菌和厌氧的氨(anammox ) 细菌是涉及全球碳并且氮骑车的二组微生物。为了测试 n-damo 和 anammox 细菌是否在自然盐的环境, DNA 和 cDNA 共同发生,样品从二个盐的湖的地表的沉积获得了(与 32 和 84 g/L 的咸度,分别地)与 anammox-damo-specific 和 n-damo-specific 教材集合的使用在西藏的高原上是 放大PCR 的,由克隆图书馆建设和种系发生的分析列在后面。DNA 和基于 cDNA 的克隆与 n-damo 结盟了, anammox 细菌成功地从二件样品被检索,显示这些二组细菌能象 84 g/L 一样高在有咸度的自然盐的环境共同发生。我们发现在自然为我们全球碳和氮周期的理解有大含意[出版摘要] | Jian YANG Hongchen JIANG Geng WU Weiguo HOU Yongjuan SUN Zhongping LAI Hailiang DONG | 2012 | Frontiers of Earth Science2012，6，4： | 12 |
| 4 | Microbial diversity in cold seep sediments from the northern South China Sea显示文摘华南海(SCS ) 是最大的西方的和平的边缘的海。然而,微生物引起的研究从来没在寒冷被执行过渗出在 SCS 的沉积。在 2004, SONNE 177 巡航发现二冷渗出有在北 SCS 的不同的水深度的区域。在水深度在 3000 m 附近的地方, Haiyang 4 区域已经为在 seafloor 上的活跃渗出被证实了,例如微生物引起的地席, authigenic 碳酸盐外壳和瓣鳃类。我们在从这感冒收集的一个 5.55-m 沉积核心调查了微生物引起的丰富和差异渗出区域。一条综合途径包括地球化学和 16S rRNA 基因被采用种系发生的分析。这里,我们证明与沉积核心的地球化学侧面一起的微生物引起的丰富和差异揭示了在硫酸盐减小和甲烷氧化之间的 a coupled 反应。直接计数结果显示出的氮蒽橘子那微生物引起的丰富从 105 ~ 106 cells/g 沉积(湿重量)。丰富的深度相关的变化显示出象甲烷集中侧面的一样的趋势。种系发生的分析显示了减少硫酸盐的细菌和厌氧的氧化甲烷的 archaea 的存在。差异在表面是高得多的,但是处于沉积的 geochemical 条件响应变化与深度严厉地减少了,例如甲烷,硫酸盐集中和全部的器官的碳。海洋的 Benthic 组 B, Chloroflexi 和 JS1 分别地是 archaeal 和细菌的图书馆的占优势的 phylotypes。 | Yong Zhang Xin Su Fang Chen Yuanyuan Wang Lu Jiao Hailiang Dong Yongyang Huang Hongchen Jiang | 2012 | Geoscience Frontiers2012，3，3： | 9 |
| 5 | Iron and lead ion adsorption by microbial flocculants in synthetic wastewater and their related carbonate formation显示文摘Although microbial treatments of heavy metal ions in wastewater have been studied, the removal of these metals through incorporation into carbonate minerals has rarely been reported. To investigate the removal of Fe3+and Pb2+, two representative metals in wastewater, through the precipitation of carbonate minerals by a microbial flocculant(MBF) produced by Bacillus mucilaginosus. MBF was added to synthetic wastewater containing diferent Fe3+and Pb2+concentrations, and the extent of flocculation was analyzed. CO2 was bubbled into the mixture of MBF and Fe3+/Pb2+to initiate the reaction. The solid substrates were analyzed via X-ray difraction, transmission electron microscopy and energy dispersive spectroscopy. The results showed that the removal efciency decreased and the MBF adsorption capacity for metals increased with increasing heavy metal concentration. In the system containing MBF, metals(Fe3+ and Pb2+), and CO2, the concentrated metals adsorbed onto the MBF combined with the dissolved CO2, resulting in oversaturation of metal carbonate minerals to form iron carbonate and lead carbonates. These results may be used in designing a method in which microbes can be utilized to combine CO2 with wastewater heavy metals to form carbonates, with the aim of mitigating environmental problems. | Minjie Yao Bin Lian Hailiang Dong Jianchao Hao Congqiang Liu | 2013 | Journal of Environmental Sciences2013，25，12： | 7 |
| 6 | Microbial diversity accumulates in a downstream direction in the Three Gorges Reservoir显示文摘Organic and inorganic materials migrate downstream and have important roles in regulating environmental health in the river networks.However,it remains unclear whether and how a mixture of materials(i.e.,microbial species)from various upstream habitats contribute to microbial community coalescence upstream of a dam.Here we track the spatial variation in microbial abundance and diversity in the Three Gorges Reservoir based on quantitative PCR and 16 S rRNA gene high-throughput sequencing data.We further quantitatively assess the relative contributions of microbial species from mainstem,its tributaries,and the surrounding riverbank soils to the area immediately upstream of the Three Gorges Dam(TGD).We found an increase of microbial diversity and the convergent microbial distribution pattern in areas immediately upstream of TGD,suggesting this area become a new confluence for microbial diversity immigrating from upstream.Indeed,the number of shared species increased from upstream to TGD but unique species decreased,indicating immigration of various sources of microbial species overwhelms local environmental conditions in structuring microbial community close to TGD.By quantifying the sources of microbial species close to TGD,we found little contribution from soils as compared to tributaries,especially for sites closer to TGD,suggesting tributary microbes have greater influence on microbial diversity and environmental health in the Three Gorges Reservoir.Collectively,our results suggest that tracking microbial geographic origin and evaluating accumulating effects of microbial diversity shed light on the ecological processes in microbial communities and provide information for regulating aquatic ecological health. | Shang Wang Weiguo Hou Hongchen Jiang Liuqin Huang Hailiang Dong Shu Chen Bin Wang Yongcan Chen Binliang Lin Ye Deng | 2021 | Journal of Environmental Sciences2021，33，3： | 7 |
| 7 | 塔里木盆地下寒武统底部高熟海相烃源岩中有机质的赋存状态显示文摘近年来的研究证明 ,中新生代未熟 -低熟海相富有机质泥质烃源岩中有机质是通过溶解在水中的分子规模的碳有机质以化学吸附的形式被吸附到矿物表面上和蒙脱石结构层内 .然而 ,对于高熟海相泥质烃源岩中有机质的赋存状态却少有报道 .通过对塔里木盆地下寒统底部高熟海相泥质烃源岩的有机碳含量、矿物表面积、扫描电镜和透射电镜的综合分析 ,得到了其有机质以细小的颗粒状保存于沉积物颗粒之间的结论 .同时 ,通过高熟海相烃源岩与现代未熟海相烃源岩有机质赋存状态的对比 ,提出了值得进一步研究的有关科学问题 . | 于炳松 Hailiang Dong 陈建强 陈晓林 梁世友 林畅松 | 2004 | 地球科学(中国地质大学学报)2004，29，2： | 7 |
| 8 | A review of the microbiology of the Rehai geothermal field in Tengchong,Yunnan Province,China显示文摘Rehai 地热的领域,在 Tengchong 定位了县在中央西方的云南省,是在中国的最大、最强烈地学习的地热的领域。弹簧的宽物理化学的差异(对 97 | Brian P.Hedlund Jessica K.Cole Amanda J.Williams Weiguo Hou Enmin Zhou Wenjun Li Hailiang Dong | 2012 | Geoscience Frontiers2012，3，3： | 6 |
| 9 | A 12-kyr record of microbial branched and isoprenoid tetraether index in Lake Qinghai,northeastern Qinghai-Tibet Plateau:Implications for paleoclimate reconstruction显示文摘Branched and Isoprenoid Tetraether(BIT) index was considered as a proxy for terrestrial organic matter input in lake sediments, based on the assumption that branched glycerol dialkyl glycerol tetraethers(b GDGTs) are mainly derived from terrestrial soils. However, mounting evidences have showed that the in situ production of b GDGTs is widespread in lakes, challenging BIT as a reliable terrestrial input proxy. Recently, BIT has been proven to be a reliable proxy for paleohydrology in a small crater lake(Lake Challa) in accordance with a different mechanism. However, the response of BIT to paleohydrology variation may differ for different lakes. In this study, we investigate the variations in the BIT index and the concentrations of its related GDGTs in a 12-ka sediment core from Lake Qinghai, in combination with our previous results for surface sediments. We find that variations in BIT strongly depend on the concentration of crenarchaeol in both surface and ancient sediments of this lake, whereas b GDGT concentration varies much less remarkably. Considering that crenarchaeol production is positively correlated with water depth in Lake Qinghai, water depth may exert negative control on the BIT index in this lake. This case is inconsistent with the positive relationship between BIT and lake levels or rainfall intensity reported for Lake Challa, suggesting that the response of BIT to local paleohydrology is site specific in lacustrine systems. Hence, the application of sedimentary BIT as a paleohydrological proxy in a specific lake requires caution before confirming the environmental controls on BIT in that lake. | WANG HuanYe DONG HaiLiang ZHANG ChuanLun JIANG HongChen LIU WeiGuo | 2016 | Science China Earth Sciences2016，59，5： | 6 |
| 10 | A comprehensive census of lake microbial diversity on a global scale显示文摘Despite recent interest in microbial diversity and community structure of lakes across various spatial scales, a global biogeographic distribution pattern and its controlling factors have not been fully disclosed. Here, we compiled and analyzed 88,334,735 environmental 16S rRNA sequences from 431 lakes across a wide range of geographical distance and environmental conditions(in particular, salinity, 0–373.3 gL^–1). Our results showed that lake sediments inhabit significantly(ANOVA: P<0.001) more diverse microbial communities than lake waters. Non-metric dimensional scaling(NMDS) ordinations indicated that microbial community compositions differed distinctly among sample types(freshwater vs. saline, water vs. sediment) and geographic locations. Mantel and partial Mantel tests showed that microbial community composition in lake water was significantly(P=0.001) correlated with geographic distance, salinity, and pH. Statistical analyses based on neutral community and null models indicated that stochastic processes may play predominant roles in shaping the microbial biogeographic distribution patterns in the studied global lake waters. The dispersal-related stochasticity(e.g., homogenizing dispersal) exhibited a stronger influence on the distribution of microbial community in freshwater lakes than in saline lakes. Overall, this work expands our understanding of the impact of geographic distance, environmental conditions, and stochastic processes on microbial distribution in global lakes. | Jian Yang Hongchen Jiang Hailiang Dong Yongqin Liu | 2019 | Science China(Life Sciences)2019，62，10： | 5 |
| 11 | 青海湖湖底沉积物中的有机质显示文摘盐湖沉积环境是烃源岩发育的重要地质环境。对青海湖沉积物中有机质、族组分及饱和烃进行测试分析发现,湖体底部水体和浅层沉积物处于弱氧化环境,沉积物中总有机碳含量较高,有机质具陆源高等植物和湖内低等菌藻类复合来源。热演化程度极低的青海湖湖底沉积物中碳数分布、主峰碳、碳优势指数(CPI)、姥鲛烷/植烷(Pr/Ph)等参数与我国典型咸化湖环境成熟烃源岩及其生成的原油中相应参数的对比,提供了一套未成熟有机质基本参数的参考值,有利于正确利用这些参数分析有机质的成熟度。 | 李善营 于炳松 Dong Hailiang | 2006 | 石油实验地质2006，28，4： | 4 |
| 12 | Phylogeography of regional fauna on the Tibetan Plateau: A review显示文摘The studies of uplift and glaciations of the Tibetan Plateau are summarized, and a series of recent case studies of the endemic species based on DNA sequences are detailed. In general, these molecular data show that all the organisms originated from Early Pliocene to Late Miocene, and then multi-stages of divergence/speciation occurred within each taxa following their original occupation on the plateau, mainly as a result of periodic glacial cycles and geographic isolation. The regional fauna may have undergone several range contractions and expansions during the Pleistocene glaciations. However, the population expansion and refugia may vary in space, time, and extent. The regional fauna of the Tibetan Plateau may be combinations of ancient movement from adjacent zoogeographical regions, speciation in situ, and postglacial colonization from adjacent areas. Geomorphic and climatic changes on the plateau definitely have a remarkable influence on the regional and adjacent biogeographic patterns, and the mechanism is very complex. | Shujuan Yang Hailiang Dong Fumin Lei | 2009 | Progress in Natural Science:Materials International2009，19，7： | 4 |
| 13 | Occurrence of Highly Mature Organic Matter in Marine Black Shale Petroleum Source Rocks of Basal Cambrian from Northern Tarim Basin, China显示文摘More and more evidence indicates that organic matter (OM) in immature organic-rich sediments and sedimentary rocks is chemically adsorbed onto the outer surfaces of minerals and into interlayer (inner) surfaces of smectitic clay minerals in the form of amorphous molecular-scale carbon. But there have been few reports about the occurrence of highly mature OM in marine black shales (petroleum source rocks). The occurrence of highly mature OM in the black shales of basal Cambrian from northern Tarim Basin is studied in this paper. Based on the comprehensive analyses of total organic carbon contents (TOC), maximum thermolysis temperatures (T-max) of OM, mineral surface areas (MSA), and scanning electronic microscopic (SEM) and transmission electronic microscopic (TEM) observations of the black shales, it is concluded that the highly mature OM in the marine black shales of the basal Cambrian from northern Tarim Basin occurs in particulates ranging in size from 1 to 5 μm in diameter. Through the contrast of the occurrence of the highly mature OM in the black shales with that of the immature ones in modern marine continental margin sediments, some scientific problems are proposed, which are worth to study further in detail. | 于炳松 Hailiang DONG 陈建强 陈晓林 梁世友 | 2004 | Chinese Journal Of Geochemistry2004，23，2： | 4 |
| 14 | Diversity of microbial plankton across the Three Gorges Dam of the Yangtze River,China显示文摘长江的三个峡水坝(TGD ) ,中国,在世界上是最大的灌溉和水力发电的工程工程之一。效果巨大人造象动物志和 macrophyte 上的 TGD 一样的工程是明显的,主要通过水动力学和流动模式的变化;然而,微生物怎么对如此的变化作出回应,是不太清楚的。这研究被瞄准在不同季节和地点在微生物引起的差异检验差别(在前面并且在 TGD 后面) 。另外,依附粒子、免费生活的社区之间的差别也被检验。在水列在后面并且在 TGD 前面的全部、潜在地活跃的微生物的社区结构与基于 DNA 、基于 RNA 的 16S rRNA 基因被分析在三个不同季节的种系发生的途径。16S rRNA 基因的克隆图书馆从提取 DNA 在扩大以后被准备并且为一些样品,在从提取 rRNA 准备 cDNA 以后。差别在不同季节并且在免费生活、依附粒子的社区之间在地点之间被观察。细菌并且 archaeal 社区比在冬季在夏天是更多样的,由于在夏天的更高滋养的层次和更温暖的温度比在冬季。依附粒子的微生物比免费生活的社区更多样,可能因为在粒子的更高滋养的层次和异构的 geochemical 微型环境。在细菌的社区结构的空间变化被观察,即,在 TGD 后面的水水库(在上游) 比在水坝前面招待了更多样的细菌的人口(下游) ,因为沉积和水从的多样的来源对水库在上游。这些结果在水坝建设影响的河生态系统为我们对环境变化的微生物引起的社区的回答的理解有重要含意。 | Shang Wang Raymond M. Dong Christina Z. Dong Liuqin Huang Hongchen Jiang Yuli Wei Liang Feng Deng Liu Guifang Yang Chuanlun Zhang Hailiang Dong | 2012 | Geoscience Frontiers2012，3，3： | 4 |
| 15 | 重液材料多钨酸钠在青海湖沉积物重力分离中的应用显示文摘多钨酸钠是一种无毒、易配制、可循环使用、密度高的新型无机重液。本文利用多钨酸钠重液,用离心机重力分离的方法将青海湖沉积物分成低(≮1.9g/cm^3)、中(1.9~2.8g/cm^3)、高(≥2.8g/cm^3)三个密度组分,平均回收率为96.5%。重力分离后的沉积物测试分析发现,有机质主要分布在富粘土矿物的中密度组,揭示了粘土矿物的表面吸附是青海湖底沉积物有机喷的主要赋存形式。 | 李善营 于炳松 Hailiang Dong 刘英超 | 2008 | 矿物岩石地球化学通报2008，27，1： | 3 |
| 16 | Precise editing of methylated cytosine in Arabidopsis thaliana using a human APOBEC3Bctd-Cas9 fusion显示文摘Dear Editor,Precise editing of specific genomic sites holds great promise in basic research and modern crop breeding,and some cytosine base editors(CBEs)have been developed for this purpose(Komor et al.,2016;Zong et al.,2018). | Zhi-Hong Liu Shanjie Tang Wentao Hu Ruo Lv Hailiang Mei Rongxin Yang Xianwei Song Xiaofeng Cao Dong Wang | 2022 | Science China(Life Sciences)2022，65，1： | 3 |
| 17 | Microbial diversity in two cold springs on the Qinghai-Tibetan Plateau显示文摘在 Wuli 区域的微生物引起的差异, Qinghai 西藏的高原用 16S rRNA 基因被调查种系发生的分析。一个总数 117 细菌并且 66 archaeal 16S rRNA 基因克隆从 Wuli 寒冷被获得弹簧。细菌的克隆能被分类进 Proteobacteria, Acidobacteria, Deinococci, Sphingobacteria, Flavobacteria, Nitrospirae, Actinobacteria, Gemmatimonadetes,并且未分类细菌;并且 archaeal 克隆能被分类进 Crenarchaeota 和 Thaumarchaeota。在主要的组之中, Proteobacteria 和 Crenarchaeota 是主导的在细菌并且 archaeal 16S rRNA 基因克隆图书馆分别地。在 Wuli 冷弹簧获得的克隆序列是仔细与那些有关从冷产地,例如高山上或在高纬度的雪 / 冰 / 土壤。特别, Wuli 区域的微生物引起的社区作文比另外的地点的冷环境在西藏的冰河更类似于那。在这研究介绍的数据在 Qinghai 西藏的高原上在冷弹簧为微生物引起的差异的更好的理解有含意。 | Gaoyuan Li Hongchen Jiang Weiguo Hou Shang Wang Liuqin Huang Huilei Ren Shicai Deng Hailiang Dong | 2012 | Geoscience Frontiers2012，3，3： | 3 |
| 18 | Distribution of glycerol dialkyl glycerol tetraethers in Tibetan hot springs显示文摘从 Gulu 温泉的 Isoprenoidal 甘油 dialkyl 甘油 tetraethers (iGDGTs )(2383.6 ? 鈴 ?? ? | Liu He Chuanlun L.Zhang Hailiang Dong Bin Fang Genhou Wang | 2012 | Geoscience Frontiers2012，3，3： | 2 |
| 19 | A critical review of mineral–microbe interaction and co-evolution:mechanisms and applications显示文摘Mineral–microbe interactions play important roles in environmental change,biogeochemical cycling of elements and formation of ore deposits.Minerals provide both beneficial(physical and chemical protection,nutrients,and energy)and detrimental(toxic substances and oxidative pressure)effects to microbes,resulting in mineral-specific microbial colonization.Microbes impact dissolution,transformation and precipitation of minerals through their activity,resulting in either genetically controlled or metabolism-induced biomineralization.Through these interactions,minerals and microbes co-evolve through Earth history.Mineral–microbe interactions typically occur at microscopic scale but the effect is often manifested at global scale.Despite advances achieved through decades of research,major questions remain.Four areas are identified for future research:integrating mineral and microbial ecology,establishing mineral biosignatures,linking laboratory mechanistic investigation to field observation,and manipulating mineral–microbe interactions for the benefit of humankind. | Hailiang Dong Liuqin Huang Linduo Zhao Qiang Zeng Xiaolei Liu Yizhi Sheng Liang Shi Geng Wu Hongchen Jiang Fangru Li Li Zhang Dongyi Guo Gaoyuan Li Weiguo Hou Hongyu Chen | 2022 | National Science Review2022，9，10： | 2 |
| 20 | Distinguishing ectomycorrhizal and saprophytic fungi using carbon and nitrogen isotopic compositions显示文摘Ectomycorrhizal 真菌,一组普遍共生真菌与种,从树获得碳来源并且改进有他们的普遍菌丝的网络的植物矿物质营养素举起。Ectomycorrhizal 真菌能被用作种体改进种植园的幸存率。腐生的真菌从植物或动物的碎片使用营养,并且区分是困难的腐生并且由词法、解剖的方法的 ectomycorrhizal 真菌。在这研究,稳定的碳和氮的差别这些真菌的同位素的作文被分析。结果证明许多 13C 比 ectomycorrhizal 真菌的那些高,腐生的真菌的许多 15N 是比 ectomycorrhizal 真菌的那些低的。稳定的碳和氮的如此的差别在 ectomycorrhizal 真菌和腐生的真菌之间的同位素的作文能被归功于到他们的不同营养来源和生态的功能。这些结果一起显示同位素的作文是的那稳定的碳和氮为在 ectomycorrhizal 和腐生的真菌之间区分的一个有效代理。 | Weiguo Hou Bin Lian Hailiang Dong Hongchen Jiang Xingliang Wu | 2012 | Geoscience Frontiers2012，3，3： | 2 |
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