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| 1 | A critical review of mineral–microbe interaction and co-evolution:mechanisms and applications显示文摘Mineral–microbe interactions play important roles in environmental change,biogeochemical cycling of elements and formation of ore deposits.Minerals provide both beneficial(physical and chemical protection,nutrients,and energy)and detrimental(toxic substances and oxidative pressure)effects to microbes,resulting in mineral-specific microbial colonization.Microbes impact dissolution,transformation and precipitation of minerals through their activity,resulting in either genetically controlled or metabolism-induced biomineralization.Through these interactions,minerals and microbes co-evolve through Earth history.Mineral–microbe interactions typically occur at microscopic scale but the effect is often manifested at global scale.Despite advances achieved through decades of research,major questions remain.Four areas are identified for future research:integrating mineral and microbial ecology,establishing mineral biosignatures,linking laboratory mechanistic investigation to field observation,and manipulating mineral–microbe interactions for the benefit of humankind. | Hailiang Dong Liuqin Huang Linduo Zhao Qiang Zeng Xiaolei Liu Yizhi Sheng Liang Shi Geng Wu Hongchen Jiang Fangru Li Li Zhang Dongyi Guo Gaoyuan Li Weiguo Hou Hongyu Chen | 2022 | National Science Review2022,9,10: | 2 |
| 2 | Tissue expression,association analysis between three novel SNPs of the RXRαgene and growth traits in Chinese indigenous cattle显示文摘Retinoid X receptor(RXR) α is a member of the nuclear hormone receptor superfamily that mediates the biological effects on several hormones,vitamins,and regulates lipid,glucose and energy metabolism.In this study,the tissue expression profiles of the bovine RXRαgene and association analysis of single nucleotide polymorphisms(SNPs) with growth traits were carried out in 413 Chinese native cattle.The expression profile was analysed in ten Jiaxian cattle tissues by real-time PCR,and the results showed that RXRαgene was abundantly expressed in adipose tissue and spleen,moderately expressed in heart,liver,lung,kidney,muscle and testis.Meanwhile,three SNPs(T27919A,T28139C and G28142A) and five haplotypes were identified.Haplotype with TTG was dominant with frequency of 69.1%.Chi-square test showed all populations were in Hardy-Weinberg equilibrium(P>0.05) at the three sites except Jiaxian cattle at G28142A site and Qinchuan cattle at T27919A site.Statistical analysis of combined sites showed that the individuals with TTGA genotype had significantly higher heart girth than those with TAGG genotype(P<0.05) and the animals with AAGA genotype had higher body weight than those with TAGG genotype(P<0.05) in T27919A-G28142A site.Heart girth,abdominal circumference and body weight of individuals with TCAG genotype were exceedingly higher than those with TTGG(P<0.01),TTGA and TCGG(P<0.05) in T28139C-G28142A site.For T27919A-T28139C site,the individuals of TCTA and TCTT genotype had significantly higher heart girth and lower height at hip cross than those with TTTA(P<0.05),and the body weight of TCAA and TCTT genotype individuals was higher than those with TTTA(P<0.05).In conclusion,these results provided evidence that the polymorphisms of RXRαgene were associated with growth traits and might apply to Chinese indigenous yellow cattle breeding program as a possible candidate for marker-assisted selection(MAS). | MA Yun GAO HanTing LIN Feng CHEN NingBo XU YongJie JIANG JinHang LI Fen LU FangRu ZHAO Man SHI KuiLin CHENG Ni LI JunYa | 2013 | Chinese Science Bulletin2013,58,18: | 1 |
| 3 | Genistein-induced G2-m arrest, P21WAF1 upregulation, and apoptosis in a non-small-cell lung cancer cell line显示文摘 | Fangru Lian Mahbubur Bhuiyan Yi-Wei Li Nathan Wall Michael Kraut Fazlul H. Sarkar | 1998 | Nutrition and Cancer1998,,3: | 1 |
| 4 | Phylogeny and Geographical Derivation of Genus Hildenbrandia Based on Morphological and Molecular Evidence显示文摘The marine and freshwater Hildenbrandia samples were collected from diverse locations of China and Japan,and mor-phological characterization and molecular phylogenetic analysis were conducted on these samples.Morphological measurements of freshwater specimens were consistent with the results of H.jigongshanensis,whereas cell dimensions of marine specimens were slightly larger than those of widely distributed H.rubra and H.crouanii.Phylogenetic trees based on rbcL,psbA and UPA sequences were consistent.Freshwater specimens collected in this study formed an independent clade with H.jigongshanensis supported by high values.Species attribution was confirmed further by the similar ITS2 secondary structures among the samples of H.jigongshan-ensis.It was found that the intraspecific divergence of rbcL gene in H.jigongshanensis was smaller than other two freshwater species H.rivularis and H.angolensis.Phylogenetic trees showed that marine specimens in this study grouped together with H.rubra samples of North America,and were different with the H.rubra samples of Europe.Combining the comparison results of CBC numbers in ITS2 secondary structure,we propose the marine samples collected in this study to be a new species Hildenbrandia qingdaoensis sp.nov.The separation of the marine and freshwater specimens was supported by the rbcL,UPA and psbA phylogeny as well as ITS2 se-condary structure inference.Biogeographical reconstruction showed the ancestor of freshwater Hildenbrandia might derive from South America and dispersed from North America to Europe and then to Asian countries,which needs to be verified further with more sam-ples and molecular evidences from South America. | NAN Fangru ZHAO Huiying LI Juan LIU Xudong LIU Qi LV Junping FENG Jia XIE Shulian | 2023 | Journal of Ocean University of China2023,22,6: | 0 |
| 5 | Comparison and phylogeny on mitochondrial genome of marine and freshwater taxa of genus Hildenbrandia(Florideophyceae,Rhodophyta)显示文摘Hildenbrandia is an early diverged lineage in Florideophyceae,Rhodophyta.The species diversity of this genus is still unresolved due to the simple morphology and limited molecular information.The mitochondrial genome of freshwater H.jigongshanensis was determined in this study.The freshwater H.jigongshanensis had a larger mitochondrial genome than the marine H.rubra and GC content was higher.Collinear alignment structure was observed between the mitochondrial genomes of H.jigongshanensis and H.rubra,except for one block that was encoded on the complement strand.More introns were found in mitochondrial genome of H.jigongshanensis than in H.rubra,and H.jigongshanensis shares the common feature with Bangiophyceae that two introns were distributed in cox1.Comparison of mitochondrial genome organization suggests that H.jigongshanensis preserves characters that could be hypothetically more similar to the ancestor of Bangiophyceae and Florideophyceae,which differ with previous studies based on chloroplast,and nuclear markers.More mitochondrial genomes and phylogenetic analyses combing nuclear,chloroplast and mitochondrial genomes are needed to clarify this discrepancy.Mitochondrion-based phylogeny in this study resulted in better solution at both the deep and recent derived nodes than single-gene phylogenies.Most protein-coding genes between H.jigongshanensis and H.rubra were identical except atp8,which was present in H.jigongshanensis while absent from H.rubra.This finding follows the trend that high Ka/Ks ratio genes are more frequently lost than low Ka/Ks ratio ones in red algae. | Fangru NAN Juan LI Jia FENG Junping Lü Qi LIU Xudong LIU Shulian XIE | 2023 | Journal of Oceanology and Limnology2023,41,6: | 0 |