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| 1 | Two gap-free reference genomes and a global view of the centromere architecture in rice显示文摘Rice(Oryza sativa),a major staple throughout the world and a model system for plant genomics and breeding,was the first crop genome sequenced almost two decades ago.However,reference genomes for all higher organisms to date contain gaps and missing sequences.Here,we report the assembly and analysis of gap-free reference genome sequences for two elite O.sativa xian/indica rice varieties,Zhenshan 97 and Minghui 63,which are being used as a model system for studying heterosis and yield.Gap-free reference genomes provide the opportunity for a global view of the structure and function of centromeres.We show that all rice centromeric regions share conserved centromere-specific satellite motifs with different copy numbers and structures.In addition,the similarity of CentO repeats in the same chromosome is higher than across chromosomes,supporting a model of local expansion and homogenization.Both genomes have over 395 non-TE genes located in centromere regions,of which∼41%are actively transcribed.Two large structural variants at the end of chromosome 11 affect the copy number of resistance genes between the two genomes.The availability of the two gap-free genomes lays a solid foundation for further understanding genome structure and function in plants and breeding climate-resilient varieties. | Jia-Ming Song Wen-Zhao Xie Shuo Wang Yi-Xiong Guo Dal-Hoe Koo Dave Kudrna Chenbo Gong Yicheng Huang Jia-Wu Feng Wenhui Zhang Yong Zhou Andrea Zuccolo Evan Long Seunghee Lee Jayson Talag Run Zhou Xi-Tong Zhu Daojun Yuan Joshua Udall Weibo Xie Rod AWing Qifa Zhang Jesse Poland Jianwei Zhang Ling-Ling Chen | 2021 | Molecular Plant2021，14，10： | 9 |
| 2 | Geology and hydrocarbon accumulations in the deepwater of the northwestern South China Sea——with focus on natural gas显示文摘The deepwater of the northwestern South China Sea is located in the central to southern parts of the Qiongdongnan Basin(QDN Basin),which is a key site for hydrocarbon exploration in recent years.In this study,the authors did a comprehensive analysis of gravity-magnetic data,extensive 3D seismic survey,cores and cuttings,paleontology and geochemical indexes,proposed the mechanism of natural gas origin,identified different oil and gas systems,and established the model of hydrocarbon accumulations in the deep-water region.Our basin tectonic simulation indicates that the evolution of QDN Basin was controlled by multiple-phased tectonic movements,such as Indochina-Eurasian Plate collision,Tibetan Uplift,Red River faulting and the expansion of the South China Sea which is characterized by Paleogene rifting,Neogene depression,and Eocene intensive faulting and lacustrine deposits.The drilling results show that this region is dominated by marineterrestrial transitional and neritic-bathyal facies from the early Oligocene.The Yacheng Formation of the early Oligocene is rich in organic matter and a main gas-source rock.According to the geological-geochemical data from the latest drilling wells,Lingshui,Baodao,Changchang Sags have good hydrocarbon-generating potentials,where two plays from the Paleogene and Neogene reservoirs were developed.Those reservoirs occur in central canyon structural-lithologic trap zone,Changchang marginal trap zone and southern fault terrace of Baodao Sag.Among them,the central canyon trap zone has a great potential for exploration because the various reservoirforming elements are well developed,i.e.,good coal-measure source rocks,sufficient reservoirs from the Neogene turbidity sandstone and submarine fan,faults connecting source rock and reservoirs,effective vertical migration,late stage aggregation and favorable structural–lithological composite trapping.These study results provide an important scientific basis for hydrocarbon exploration in this region,evidenced by the recent discovery of the significant commercial LS-A gas field in the central canyon of the Lingshui Sag. | WANG Zhenfeng SUN Zhipeng ZHANG Daojun ZHU Jitian LI Xushen HUANG Baojia GUO Minggang JIANG Rufeng | 2015 | Acta Oceanologica Sinica2015，34，10： | 9 |
| 3 | Characterising the nature, evolution and origin of detachment fault in central depression belt, Qiongdongnan Basin of South China Sea: evidence from seismic reflection data显示文摘Using regional geological, newly acquired 2D and 3D seismic, drilling and well log data, especially 2D long cable seismic profiles, the structure and stratigraphy in the deep-water area of Qiongdongnan Basin are interpreted. The geometry of No.2 fault system is also re-defined, which is an important fault in the central depression belt of the deep-water area in the Qiongdongnan Basin by employing the quantitative analysis techniques of fault activity and backstripping. Furthermore, the dynamical evolution of the No.2 fault system and its controls on the central depression belt are analyzed. This study indicates that the Qiongdongnan Basin was strongly influenced by the NW-trending tensile stress field during the Late Eocene. At this time, No.2 fault system initiated and was characterized by several discontinuous fault segments, which controlled a series small NE-trending fault basins. During the Oligocene, the regional extensional stress field changed from NW-SE to SN with the oceanic spreading of South China Sea, the early small faults started to grow along their strikes, eventually connected and merged as the listric shape of the No.2 fault system as observed today. No.2 fault detaches along the crustal Moho surface in the deep domain of the seismic profiles as a large-scale detachment fault. A large-scale rollover anticline formed in hanging wall of the detachment fault. There are a series of small fault basins in both limbs of the rollover anticline, showing that the early small basins were involved into fold deformation of the rollover anticline. Structurally, from west to east, the central depression belt is characterized by alternatively arranged graben and half-graben. The central depression belt of the Qiongdongnan Basin lies at the extension zone of the tip of the V-shaped northwestern ocean sub-basin of the South China Sea, its activity period is the same as the development period of the northwestern ocean sub-basin, furthermore the emplacement and eruption of magma that originated from the mantle below the Moho surface occurred at the region between Songnan-Baodao and Changchang sags, from east to west with the early-stage spreading of the South China Sea. Therefore, this study not only helps in depicting the structural features and evolution of the deep-water basin in the Qiongdongnan Basin, but also provides the geological and structural evidence for establishing a unified model of continental margin extension and oceanic spreading. | REN Jianye ZHANG Daojun TONG Dianjun HUANG Anmin WANG Yahui LEI Chao ZUO Qianmei ZHAO Yanghui HE Weijun YANG Linlong | 2014 | Acta Oceanologica Sinica2014，33，12： | 8 |
| 4 | Gas accumulation conditions and key technologies for exploration & development of Sulige gasfield显示文摘Up to now,the Sulige area in Ordos Basin has the favorable exploration area of 55×10^(3) km^(2),the total reserve of natural gas of nearly 6×10^(12) m^(3) and the proven reserve(including basic proven reserve)of 4.77×10^(12) m^(3),where the annual production of natural gas reaches 23×10^(9) m^(3),and the Sulige gasfield is the largest onshore natural gas field in China.The pay zone of the Sulige gasfield mainly is Member 8 of Shihezi Formation and Member 1 of Shanxi Formation of Permian which belong to the typical tight sandstone gas reservoir.The coal measure strata in Carboniferous Benxi Formation,Permian Taiyuan Formation and Shanxi Formation provide abundant gas sources for the Gulige gas reservoirs.An open-flow sedimentary model of lacustrine delta is developed,the gentle bottom,sand supply from multisource,strong hydrodynamic force and multi-period superposition control the distribution of largearea reservoir sand body.Lithology of the reservoir is the sandstone of the fluvial-delta facies,the physical property is poor and the heterogeneity is strong,the average porosity ranges from 4%to 12%and the average permeability varies from 0.01 to 1 mD.The gas reservoir is characterized by wide hydrocarbon generation,pervasive hydrocarbon charging,short-range migration and massive accumulation.The pressure coefficient of the gas reservoir ranges from 0.62 to 0.90,indicating the low-pressure gas reservoir,and the single-well yield is low.Full digital seismic technique in the desert area,nonlongitudinal seismic technique in the loess plateau,accurate logging evaluation technique,tight sand reservoir stimulation technology and horizontal well development technology are key technologies for exploration and development of Sulige gasfield. | Jinhua Fu Liyong Fan Xinshe Liu Daojun Huang | 2018 | Petroleum Research2018，3，2： | 3 |
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