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| 1 | Sequencing a Juglans regia×J.microcarpa hybrid yields high-quality genome assemblies of parental species显示文摘Members of the genus Juglans are monecious wind-pollinated trees in the family Juglandaceae with highly heterozygous genomes,which greatly complicates genome sequence assembly.The genomes of interspecific hybrids are usually comprised of haploid genomes of parental species.We exploited this attribute of interspecific hybrids to avoid heterozygosity and sequenced an interspecific hybrid Juglans microcarpa×J.regia using a novel combination of single-molecule sequencing and optical genome mapping technologies.The resulting assemblies of both genomes were remarkably complete including chromosome termini and centromere regions.Chromosome termini consisted of arrays of telomeric repeats about 8 kb long and heterochromatic subtelomeric regions about 10 kb long.The centromeres consisted of arrays of a centromere-specific Gypsy retrotransposon and most contained genes,many of them transcribed.Juglans genomes evolved by a whole-genome-duplication dating back to the Cretaceous-Paleogene boundary and consist of two subgenomes,which were fractionated by numerous short gene deletions evenly distributed along the length of the chromosomes.Fractionation was shown to be asymmetric with one subgenome exhibiting greater gene loss than the other.The asymmetry of the process is ongoing and mirrors an asymmetry in gene expression between the subgenomes.Given the importance of J.microcarpa×J.regia hybrids as potential walnut rootstocks,we catalogued disease resistance genes in the parental genomes and studied their chromosomal distribution.We also estimated the molecular clock rates for woody perennials and deployed them in estimating divergence times of Juglans genomes and those of other woody perennials. | Tingting Zhu Le Wang Frank M.You Juan C.Rodriguez Karin R.Deal Limin Chen Jie Li Sandeep Chakraborty Bipin Balan Cai-Zhong Jiang Patrick J.Brown Charles ALeslie Mallikarjuna KAradhya Abhaya M.Dandekar Patrick E.McGuire Daniel Kluepfel Jan Dvorak Ming-Cheng Luo | 2019 | Horticulture Research2019，6，1： | 7 |
| 2 | Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei(Blyth, 1847) and description of a new species显示文摘Trachypithecus,which currently contains 20 species divided into four groups,is the most speciose and geographically dispersed genus among Asian colobines.Despite several morphological and molecular studies,however,its evolutionary history and phylogeography remain poorly understood.Phayre’s langur(Trachypithecus phayrei) is one of the most widespread members of the genus,but details on its actual distribution and intraspecific taxonomy are limited and controversial.Thus,to elucidate the evolutionary history of Trachypithecus and to clarify the intraspecific taxonomy and distribution of T.phayrei,we sequenced 41 mitochondrial genomes from georeferenced fecal samples and museum specimens,including two holotypes.Phylogenetic analyses revealed a robustly supported phylogeny of Trachypithecus,suggesting that the T.pileatus group branched first,followed by the T.francoisi group,and the T.cristatus and T.obscurus groups most recently.The four species groups diverged from each other 4.5-3.1 million years ago(Ma),while speciation events within these groups occurred much more recently(1.6-0.3 Ma).Within T.phayrei,we found three clades that diverged 1.0-0.9 Ma,indicating the existence of three rather than two taxa.Following the phylogenetic species concept and based on genetic,morphological,and ecological differences,we elevate the T.phayrei subspecies to species level,describe a new species from central Myanmar,and refine the distribution of the three taxa.Overall,our study highlights the importance of museum specimens and provides new insights not only into the evolutionary history of T.phayrei but the entire Trachypithecus genus as well. | Christian Roos Kristofer MHelgen Roberto Portela Miguez Naw May Lay Thant Ngwe Lwin Aung Ko Lin Aung Lin Khin Mar Yi Paing Soe Zin Mar Hein Margaret Nyein Nyein Myint Tanvir Ahmed Dilip Chetry Melina Urh EGrace Veatch Neil Duncan Pepijn Kamminga Marcus AHChua Lu Yao Christian Matauschek Dirk Meyer Zhi-Jin Liu Ming Li Tilo Nadler Peng-Fei Fan Le Khac Quyet Michael Hofreiter Dietmar Zinner Frank Momberg | 2020 | Zoological Research2020，41，6： | 5 |
| 3 | World Gastroenterology Organisation Global Guidelines: Nonalcoholic Fatty Liver Disease and Nonalcoholic Steatohepatitis显示文摘 | Douglas R. LaBrecque Zaigham Abbas Frank Anania Peter Ferenci Aamir G. Khan Khean-Lee Goh Saeed S. Hamid Vasily Isakov Maribel Lizarzabal Manuel M. Pe?aranda Juan F.R. Ramos Shiv Sarin Davor Stimac Alan B.R. Thomson Muhammed Umar Justus Krabshuis Anton Le | 2014 | Journal of Clinical Gastroenterology2014，，6： | 3 |
| 4 | Effect of Ischemia–Reperfusion on Bile Canalicular F-Actin Microfilaments in Hepatocytes of Human Liver Allograft显示文摘 | Liliane Benko?l Frank Dodero Jean Hardwigsen Pierre Campan Danielle Botta-Fridlund Dominique Lombardo Yves Patrice Le Treut Albert Chamlian | 2001 | Digestive Diseases and Sciences2001，，8： | 2 |
| 5 | Rested and refreshed after anesthesia? Overlapping neurobiologic mechanisms of sleep and anesthesia显示文摘 | Nelson LE Franks NP Maze M | 2004 | Anesthesiology2004，100，6： | 1 |
| 6 | Pulmonary dysfunction in rheumatoid arthritis显示文摘 | Frank ST WegJG Hɑrkleroad LE et ɑl | 1973 | Chest1973，63，： | 1 |
| 7 | High Prognostic Impact of Flow Cytometric Minimal Residual Disease Detection in Acute Myeloid Leukemia: Data From the HOVON/SAKK AML 42A Study显示文摘 | Monique Terwijn Wim L.J. van Putten Angèle Kelder Vincent H.J. van der Velden Rik A. Brooimans Thomas Pabst Johan Maertens Nancy Boeckx Georgine E. de Greef Peter J.M. Valk Frank W.M.B. Preijers Peter C. Huijgens Angelika M. Dr?ger Urs Schanz Mojca Jongen | 2013 | Journal of Clinical Oncology2013，，31： | 1 |
| 8 | Expression of the protein marker p16INK4a in the cervix uteri cancer显示文摘 | Volgareva GM Zavalishina LE Frank GA | 2002 | Arkh Patol2002，64，1： | 1 |
| 9 | Equilibrium of the human body and the gravity line:the basics显示文摘 | Le Huec JC Saddiki R Franke J | 2011 | Eur Spine J2011，20，： | 1 |
| 10 | Liver transplantation for hilar cholangiocarcinoma—a single-centre experience显示文摘 | Silke Schüle Annelore Altendorf-Hofmann Frank Ute? Falk Rauchfu? Martin Freesmeyer Thomas Kn?sel Yves Dittmar Utz Settmacher | 2013 | Langenbeck’s Archives of Surgery2013，，1： | 1 |
| 11 | Oxidative DNA damage is associated ith intense noise exposure in the rat显示文摘 | Van Campen LE Murphy WJ Franks JR | | 0，，： | 1 |
| 12 | Progress in redox flow batteries,remaining challenges and their applications in energy storage显示文摘 | Leung Puiki Li Xiaohong De León Carlos Ponce Berlouis Leonard Low C T J Walsh Frank C | 2012 | RSCAdvances2012，2，10： | 1 |
| 13 | Neurophsiological evidencefor a deficit in inhibitor mechanisms involved in sensory gating in schizophrenia显示文摘 | Pachtman E Franks R | 1982 | Biol Psychiatry1982，17，： | 1 |
| 14 | Oxidative DNA damage is associated with intense noise exposure in the rat显示文摘 | Van Campen LE Murphy WJ Franks JR | 2002 | Hear Res2002，164，： | 1 |
| 15 | JNK-mediated Bim phospho- rylation potentiates Bax-dependent apoptosis显示文摘 | Putcha GV Le S Frank S | 2003 | Neuron2003，38，6： | 1 |
| 16 | JNK-mediated BIM phosphorylation potentiates BAX-dependent apoptosis显示文摘 | Putcha GV Le S Frank S | 2003 | Neuron2003，38，6： | 1 |
| 17 | Atmospheric distribution and long-range transport behavior of organochlorine pesti- cides in North America显示文摘 | Li Shen Frank Wania Ying D Le | 2006 | Environ Sci Technol2006，39，： | 1 |
| 18 | Equilibrium of the human body and the gravity line:the basics显示文摘 | Le Huec JC Saddiki R Franke J | 2011 | Eur Spine J2011，20，5： | 1 |
| 19 | Evidence for defective mesolimbic dopamine exocytosis in obesity-prone rats显示文摘 | Geiger BM Behr GG Frank LE | 2008 | FASEB J2008，22，8： | 1 |
| 20 | Sensory physiology and catecholamines in schizophrenia and mania显示文摘 | Gerhardt GA Franks R | 1990 | Psychiatry Res1990，31，3： | 1 |
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