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| 1 | Rhizospheric microbial communities are driven by Panax ginseng at different growth stages and biocontrol bacteria alleviates replanting mortality显示文摘The cultivation of Panax plants is hindered by replanting problems, which may be caused by plantdriven changes in the soil microbial community. Inoculation with microbial antagonists may efficiently alleviate replanting issues. Through high-throughput sequencing, this study revealed that bacterial diversity decreased,whereas fungal diversity increased, in the rhizosphere soils of adult ginseng plants at the root growth stage under different ages. Few microbial community, such as Luteolibacter, Cytophagaceae, Luteibacter, Sphingomonas,Sphingomonadaceae, and Zygomycota, were observed; the relative abundance of microorganisms, namely,Brevundimonas, Enterobacteriaceae, Pandoraea, Cantharellales, Dendryphion, Fusarium, and Chytridiomycota,increased in the soils of adult ginseng plants compared with those in the soils of 2-year-old seedlings. Bacillus subtilis 50-1, a microbial antagonist against the pathogenic Fusarium oxysporum, was isolated through a dual culture technique. These bacteria acted with a biocontrol efficacy of 67.8%. The ginseng death rate and Fusarium abundance decreased by 63.3% and 46.1%, respectively, after inoculation with B. subtilis 50-1. Data revealed that microecological degradation could result from ginseng-driven changes in rhizospheric microbial communities;these changes are associated with the different ages and developmental stages of ginseng plants. Biocontrol using microbial antagonists alleviated the replanting problem. | Linlin Dong Jiang Xu Lianjuan Zhang Ruiyang Cheng Guangfei Wei He Su Juan Yang Jun Qian Ran Xu Shilin Chen | 2018 | Acta Pharmaceutica Sinica B2018，8，2： | 27 |
| 2 | The Chrysanthemum nankingense Genome Provides Insights into the Evolution and Diversification of Chrysanthemum Flowers and Medicinal Traits显示文摘The Asteraceae (Compositae),a large plant family of approximately 24 000-35 000 species,accounts for^10% of all angiosperm species and contributes a lot to plant diversity.The most representative members of the Asteraceae are the economically important chrysanthemums (Chrysanthemum L.)that diversified through reticulate evolution.Biodiversity is typically created by multiple evolutionary mechanisms such as wholegenome duplication 0NGD)or polyploidization and locally repetitive genome expansion.However,the lack of genomic data from chrysanthemum species has prevented an in-depth analysis of the evolutionary mechanisms involved in their diversification.Here,we used Oxford Nanopore long-read technologyto sequence the diploid Chrysanthemum nankingense genome,which represents one of the progenitor genomes of domesticated chrysanthemums.Our analysis revealed that the evolution of the C.nankingense genome was driven by bursts of repetitive element expansion and WGD events including a recentWGD that distinguishes chrysanthemum from sunflower,which diverged from chrysanthemum approximately 38.8 million years ago.Variations of ornamental and medicinal traits in chrysanthemums are linked to the expansion of candidate gene families by duplication events including paralogous gene duplication.Collectively,our study of the assembled reference genome offers new knowledge and resources to dissect the history and pattern of evolution and diversification of chrysanthemum plants,and also to accelerate their breeding and improvement. | Chi Song Yifei Liu Aiping Song Gangqiang Dong Hongbo Zhao Wei Sun Shyam Ramakrishnan Ying Wang Shuaibin Wang Tingzhao Li Yan Niu Jiafu Jiang Bin Dong Ye Xia Sumei Chen Zhigang Hu Fadi Chen Shilin Chen | 2018 | Molecular Plant2018，11，12： | 24 |
| 3 | Integrated metabolomic and transcriptomic analyses revealed the distribution of saponins in Panax notoginseng显示文摘Panax notoginseng is famous for its important therapeutic effects. Saponins are bioactive compounds found in different parts and developmental stages of P. notoginseng plants. Thus, it is urgently to study saponins distribution in different parts and growth ages of P. notoginseng plants. In this study,potential biomarkers were found, and their chemical characteristic differences were revealed through metabolomic analysis. High-performance liquid chromatography data indicated the higher content of saponins(i.e., Rg1, Re, Rd, and Rb1) in the underground parts than that in the aerial parts. 20(S)-Protopanaxadiol saponins were mainly distributed in the aerial parts. Additionally, the total saponin content in the 3-year-old P. notoginseng plant(188.0 mg/g) was 1.4-fold higher than that in 2-year-old plant(130.5 mg/g). The transcriptomic analysis indicated the tissue-specific transcription expression of genes, namely, PnFPS, PnSS, PnSE1, PnSE2, and PnDS, which encoded critical synthases in saponin biosyntheses. These genes showed similar expression patterns among the parts of P. notoginseng plants.The expression levels of these genes in the flowers and leaves were 5.2 fold higher than that in the roots and fibrils. These results suggested that saponins might be actively synthesized in the aerial parts and transformed to the underground parts. This study provides insights into the chemical and genetic characteristics of P. notoginseng to facilitate the synthesis of its secondary metabolites and a scientific basis for appropriate collection and rational use of this plant. | Guangfei Wei Linlin Dong Juan Yang Lianjuan Zhang Jiang Xu Feng Yang Ruiyang Cheng Ran Xu Shilin Chen | 2018 | Acta Pharmaceutica Sinica B2018，8，3： | 13 |
| 4 | Optimal integration of mobile battery energy storage in distribution system with renewables显示文摘An optimal sizing method is proposed in this paper for mobile battery energy storage system(MBESS)in the distribution system with renewables.The optimization is formulated as a bi-objective problem,considering the reliability improvement and energy transaction saving,simultaneously.To evaluate the reliability of distribution system with MBESS and intermittent generation sources,a new framework is proposed,which is based on zone partition and identification of circuit minimal tie sets.Both analytic and simulation methods for reliability assessment are presented and compared in the framework.Case studies on a modified IEEE benchmark system have verified the performance of the proposed approach. | Yu ZHENG Zhaoyang DONG Shilin HUANG Ke MENG Fengji LUO Jie HUANG David HILL | 2015 | Journal of Modern Power Systems and Clean Energy2015，3，4： | 10 |
| 5 | Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield显示文摘Artemisia annua is the major natural source of artemisinin,an anti-malarial medicine commonly used worldwide.Here,we present chromosome-level haploid maps for two A.annua strains with different artemisinin contents to explore the relationships between genomic organization and artemisinin production.High-fidelity sequencing,optical mapping,and chromatin conformation capture sequencing were used to assemble the heterogeneous and repetitive genome and resolve the haplotypes of A.annua.Approximately 5o,ooo genes were annotated for each haplotype genome,and a triplication event that occurred approximately 58.12million years ago was examined for the first time in this species.A total of 3,903,467-5,193,414 variants(SNPs,indels,and structural variants)were identified in the 1.5-Gb genome during pairwise comparison between haplotypes,consistent with the high heterozygosity of this species.Genomic analyses revealed a correlation between artemisinin concents and the copy number of amorpha-4,11-dienes ynthasegenes.This correlation was further confirmed by resequencing of 36A.annua samples with varied artemisinin contents.Circular consensus sequencing of transcripts facilitated the detection of paralog expression.Collectively,our study provides chromosome-level allele-aware genome assemblies for two A.annua strains and new insights into the biosynthesis of artemisinin and its regulation,which will contribute to conquering malaria worldwide. | Baosheng Liao Xiaofeng Shen Li Xiang Shuai Guo Shiyu Chen Ying Meng Yu Liang Dandan Ding Junqi Bai Dong Zhang Tomasz Czechowski Yi Li Hui Yao Tingyu Mai Caroline Howard Chao Sun Haitao Liu Jiushi Liu Jin Pei Jihai Gao Jigang Wang Xiaohui Qiu Zhihai Huang Hongyi Li Ling Yuan Jianhe Wei lan Graham Jiang Xu Boli Zhang Shilin Chen | 2022 | Molecular Plant2022，15，8： | 9 |
| 6 | Development of nutritious rice with high zinc/selenium and low cadmium in grains through QTL pyramiding显示文摘Enriching zinc(Zn) and selenium(Se) levels,while reducing cadmium(Cd) concentration in rice grains is of great benefit for human diet and health.Large natural variations in grain Zn, Se, and Cd concentrations in different rice accessions enable Zn/Sebiofortification and Cd-minimization through molecular breeding. Here, we report the development of new elite varieties by pyramiding major quantitative trait loci(QTLs) that significantly contribute to high Zn/Se and low Cd accumulation in grains. A chromosome segment substitution line CSSLGCC7 with the PA64s-derived GCC7 allele in the 93-11 background, exhibited steadily higher Mn and lower Cd concentrations in grains than those of 93-11. This elite chromosome segment substitution line(CSSL) was used as the core breeding material to cross with CSSLs harboring other major QTLs for essential mineral elements, especially CSSLGZC6 for grain Zn concentration and CSSLGSC5 for grain Se concentration. The CSSLGCC7+GZC6 and CSSLGCC7+GSC5 exhibited lower Cd concentration with higher Zn and Se concentrations in grains, respectively. Our study thus provides elite materials for rice breeding targeting high Zn/Se and low Cd concentrations in grains. | Chaolei Liu Shilin Ding Anpeng Zhang Kai Hong Hongzhen Jiang Shenglong Yang Banpu Ruan Bin Zhang Guojun Dong Longbiao Guo Dali Zeng Qian Qian Zhenyu Gao | 2020 | Journal of Integrative Plant Biology2020，62，3： | 7 |
| 7 | Application and development of modern long-span space structures in China显示文摘Modem long-span space structures,developed during the 1970s and 1980s,are light and effective structures based on new technologies and light-weight high-strength materials,such as membranes and steel cables.These structures include air-supported membrane structures,cable-membrane structures,cable truss structures,beam string structures,suspen-domes,cable domes,composite structures of cable dome and single-layer lattice shell,Tensairity structures and so forth.For the premodem space structures widely used since the mid-twentieth century(such as thin shells,space trusses,lattice shells and ordinary cable structures),new space structures have been developed by the combination of different structural forms and materials.The application of prestressing technology and the innovation of structural concepts and configurations are also associated with modem space structures,including composite space trusses,open-web grid structures,polyhedron space frame structures,partial double-layer lattice shells,cable-stayed grid structures,tree-type structures,prestressed segmental steel structures and so forth.This paper provides a review of the structural characteristics and practical applications in China of modem rigid space structures,modem flexible space structures and modem rigid-flexible combined space structures. | Shilin DONG Yang ZHAO Dong XING | 2012 | Frontiers of Structural and Civil Engineering2012，6，3： | 3 |
| 8 | A chromosome-scale genome assembly of Artemisia argyi reveals unbiased subgenome evolution and key contributions of gene duplication to volatile terpenoid diversity显示文摘Artemisia argyi Le´vl.et Vant.,a perennial Artemisia herb with an intense fragrance,is widely used in traditional medicine in China and many other Asian countries.Here,we present a chromosome-scale genome assembly of A.argyi comprising 3.89 Gb assembled into 17 pseudochromosomes.Phylogenetic and comparative genomic analyses revealed that A.argyi underwent a recent lineage-specificwhole-genomeduplication(WGD)event after divergence fromArtemisia annua,resulting in two subgenomes.Wedeciphered the diploid ancestral genome of A.argyi,and unbiased subgenome evolution was observed.The recent WGD led to a large number of duplicated genes in the A.argyi genome.Expansion of the terpene synthase(TPS)gene family through various types of gene duplication may have greatly contributed to the diversity of volatile terpenoids in A.argyi.In particular,we identified a typical germacrene D synthase gene cluster within the expanded TPS gene family.The entire biosynthetic pathways of germacrenes,(+)-borneol,and(+)-camphor were elucidated in A.argyi.In addition,partial deletion of the amorpha-4,11-diene synthase(ADS)gene and loss of function of ADS homologs may have resulted in the lack of artemisinin production in A.argyi.Our study provides newinsights into the genome evolution of Artemisia and lays a foundation for further improvement of the quality of this important medicinal plant. | Hongyu Chen Miaoxian Guo Shuting Dong Xinling Wu Guobin Zhang Liu He Yuannian Jiao Shilin Chen Li Li Hongmei Luo | 2023 | Plant Communications2023，4，3： | 2 |
| 9 | Effects of warming on soil respiration during the non-growing seasons in a semiarid temperate steppe显示文摘尽管许多研究认为增温对陆地生态系统非生长季土壤呼吸的影响非常重要,但是关于这一问题仍缺乏充分的理解。本论文研究了非生长季增温对温带半干旱草原土壤呼吸的影响,并探讨了其影响机制。本实验位于温带半干旱典型草原,包括10对样地,每对样地包括一个对照和模拟增温处理。模拟增温样地自2014年10月开始,采用开顶箱(OTC)进行。2014年10月到2015年4月,2015年10月到2016年4月期间每月测定几次土壤呼吸、土壤温度与土壤湿度;并测定0-20 cm微生物量碳(MBC)、微生物量氮(MBN)和土壤速效氮。采用重复测量方差和成对t检验方法分析增温、时间及其交互作用对土壤呼吸的影响。采用简单回归确定各指标之间的因果关系。结果表明,对照样地非生长季平均土壤呼吸速率为0.24μmol m^(-2) s^(-1),约占当地生长季碳通量的14.4%。模拟增温在两个非生长季使土壤温度和土壤呼吸分别比对照样地提高了1.48℃(P<0.001)和42.1%(P<0.01)。2015-2016年非生长季模拟增温降低了0.66%的土壤湿度,降低幅度不显著。模拟增温处理下2015-2016年非生长季MBC和MBN分别显著提高了19.72%和20.99%(P<0.05)。此外,研究结果还表明,土壤温度、MBC和MBN的变化调控了土壤呼吸对模拟增温的响应。本结果揭示非生长季土壤呼吸变化能影响碳循环的其它组分,并可以有效促进气候变化背景下陆地生态系统碳循环的模型预测。 | Yuan Miao Mengzhou Liu Juan Xuan Wei Xu Shilin Wang Renhui Miao Dong Wang Wei Wu Yinzhan Liu Shijie Han | 2020 | Journal of Plant Ecology2020，13，3： | 2 |
| 10 | Pretension process analysis of prestressed space grid structures 显示文摘 | Shilin Dong Xingfei Yuan | 2007 | Journal of Constructional Steel Research2007，63，3： | 1 |
| 11 | Some aspects of the application of dynamic relaxation method in space structures显示文摘 | Zhang Zhihong Yuan Xingfei Dong Shilin | 2004 | International Journal of Space Structures2004，19，2： | 1 |
| 12 | Prestress design of cable domes with new forms 显示文摘 | Xingfei Yuan Lianmeng Chen Shilin Dong | 2007 | International Journal of Solids and Structures2007，44，： | 1 |
| 13 | A new average response spectrum method for linear response analysis of structures to spatial earthquake ground motions显示文摘 | Su Liang Dong Shilin Shiro Kato | 2006 | Engineering Structures2006，28，13： | 1 |
| 14 | Seismic Design for Steel Trussed Arch to Multi-Support Excitations 显示文摘 | SU Liang DONG Shilin Shiro Kato | 2007 | Journal of Constructional Steel Research2007，63，6： | 1 |
| 15 | A new average response spectrum method for linear response analysis of structures to spatial earthquake ground motions 显示文摘 | SU LIANG DONG SHILIN SHIRO KATO | 2006 | Engineering Structures2006，28，13： | 1 |
| 16 | Seismic design for steel trussed arch to multi-support excitations显示文摘 | Liang Su Shilin Dong Shiro Kato | 2006 | Journal of Constructional Steel Research2006，，6： | 1 |
| 17 | A new average response spectrum method for linear response analysis of structures to spatial earthquake ground motions 显示文摘 | SU Liang DONG Shilin KATO S | 2006 | Engineering Structures2006，28，13： | 1 |
| 18 | Seismic design for steel trussed arch to multi-support excitations显示文摘 | Liang Su Shilin Dong Shiro Kato | 2006 | Journal of Constructional Steel Research2006，，6： | 1 |
| 19 | Structural design of a practical suspen-dome 显示文摘 | Zhang Zhihong Cao Qingshuai Dong Shilin Fu Xueyi | 2008 | International Journal Advanced Steel Construction2008，4，4： | 1 |
| 20 | Force finding analysis of hybrid space structures 显示文摘 | Zhang Zhihong Dong Shilin Yukio Tamura | 2005 | International Journal Space Structures2005，20，2： | 1 |
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