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| 1 | Excitation-emission matrix (EEM) fluorescence spectroscopy for characterization of organic matter in membrane bioreactors: Principles, methods and applications显示文摘The membrane bioreactor(MBR)technology is a rising star for wastewater treatment.The pollutant elimination and membrane fouling performances of MBRs are essentially related to the dissolved organic matter(DOM)in the system.Three-dimensional excitation-emission matrix(3D-EEM)fluorescence spectroscopy,a powerful tool for the rapid and sensitive characterization of DOM,has been extensively applied in MBR studies;however,only a limited portion of the EEM fingerprinting information was utilized.This paper revisits the principles and methods of fluorescence EEM,and reviews the recent progress in applying EEM to characterize DOM in MBR studies.We systematically introduced the information extracted from EEM by considering the fluorescence peak location/intensity,wavelength regional distribution,and spectral deconvolution(giving fluorescent component loadings/scores),and discussed how to use the information to interpret the chemical compositions,physiochemical properties,biological activities,membrane retention/fouling behaviors,and migration/transformation fates of DOM in MBR systems.In addition to conventional EEM indicators,novel fluorescent parameters are summarized for potential use,including quantum yield,Stokes shift,excited energy state,and fluorescence lifetime.The current limitations of EEM-based DOM characterization are also discussed,with possible measures proposed to improve applications in MBR monitoring. | Jinlan Yu Kang Xiao Wenchao Xue Yue-xiao Shen Jihua Tan Shuai Liang Yanfen Wang Xia Huang | 2020 | Frontiers of Environmental Science & Engineering2020，14，2： | 3 |
| 2 | Vascularized bone regeneration accelerated by 3D-printed nanosilicate-functionalized polycaprolactone scaffold显示文摘Critical oral-maxillofacial bone defects,damaged by trauma and tumors,not only affect the physiological functions and mental health of patients but are also highly challenging to reconstruct.Personalized biomaterials customized by 3D printing technology have the potential to match oralmaxillofacial bone repair and regeneration requirements.Laponite(LAP)nanosilicates have been added to biomaterials to achieve biofunctional modification owing to their excellent biocompatibility and bioactivity.Herein,porous nanosilicate-functionalized polycaprolactone(PCL/LAP)was fabricated by 3D printing technology,and its bioactivities in bone regeneration were investigated in vitro and in vivo.In vitro experiments demonstrated that PCL/LAP exhibited good cytocompatibility and enhanced the viability of bone marrow mesenchymal stem cells(BMSCs).PCL/LAP functioned to stimulate osteogenic differentiation of BMSCs at the mRNA and protein levels and elevated angiogenic gene expression and cytokine secretion.Moreover,BMSCs cultured on PCL/LAP promoted the angiogenesis potential of endothelial cells by angiogenic cytokine secretion.Then,PCL/LAP scaffolds were implanted into the calvarial defect model.Toxicological safety of PCL/LAP was confirmed,and significant enhancement of vascularized bone formation was observed.Taken together,3D-printed PCL/LAP scaffolds with brilliant osteogenesis to enhance bone regeneration could be envisaged as an outstanding bone substitute for a promising change in oral-maxillofacial bone defect reconstruction. | Xiongcheng Xu Long Xiao Yanmei Xu Jin Zhuo Xue Yang Li Li Nianqi Xiao Jing Tao Quan Zhong Yanfen Li Yuling Chen Zhibin Du Kai Luo | 2021 | Regenerative Biomaterials2021，8，6： | 3 |
| 3 | Comparative proteome analysis of alkaliphilic Bacillus sp.N16-5 grown on different carbon sources显示文摘To determine the impact of carbohydrates on the metabolic pathway in alkaliphiles, proteomes were obtained from cultures containing different carbohydrates and were resolved on two-dimensional gel electrophoresis (2-DE). The proteomes were compared to determine differentially expressed proteins. A novel alkaliphilic bacterium (alkaliphilic Bacillus sp. N16-5 isolated from Wudunur Soda Lake, China) was isolated in media with five different carbon sources (glucose, mannose, galactose, arabinose, and xylose). Comparative proteome analysis identified 61 differentially expressed proteins, which were mainly involved in carbohydrate metabolism, amino acid transport, and metabolism, as well as energy production and conversion. The comparison was based on the draft genome sequence of strain N16-5. The abundance of enzymes involved in central metabolism was significantly changed when exposed to various carbohydrates. Notably, catabolite control protein A (CcpA) was up-regulated under all carbon sources compared with glucose. In addition, pentose exhibited a stronger effect than hexose in CcpA-mediated carbon catabolite repression. These results provided a fundamental understanding of carbohydrate metabolism in alkaliphiles. | LI Gang SONG YaJian XUE YanFen RAO Lang ZHOU Chen WANG QuanHui MA YanHe | 2011 | Science China(Life Sciences)2011，54，1： | 2 |
| 4 | Characterization of a Partially Protective B-cell Epitope within the 62 kDa Antigen of Schistosoma japonicum显示文摘约 2 亿个人当前全球受不了血吸虫病,最重要的人的寄生疾病之一。尽管确定的感染能与驱虫剂和 praziquantel 被治疗,种痘将是为不可分的控制的理想的方法血吸虫病。血吸虫 mansoni IrV-5,为研究由世界健康组织 / 专辑计划推荐了为一个疫苗的候选人并且在 TropicalDiseases 训练,在动物模型的生产高保护。我们因此集中于它的相当或相同的事物,血吸虫日本嗯 62 kDa 抗原,并且为 B 房间 epitopes 的预言用 B cell/antibody-related 数据库和分析工具分析了它。Epitope B3 为进一步的调查被选择。用一个鼠科的模型的实验显示与 B3 使免疫的老鼠导致了淋巴细胞增长并且生产了特定的免疫球蛋白 G 和 G1 的高水平,但是没生产出色的 cytokines。种痘显示出部分保护的免疫,对 S 由蠕虫负担和反肥沃免疫测量了。日本嗯。这些结果显示了 epitope B3from S。日本嗯 62-kDa 抗原可能为未来 epitope 疫苗调查充当一张候选人免疫情报。 | Lei ZHANG Xue YANG Yanfen YANG Jiaqing ZHAO Jianghua YANG Feng LIU Zhaosong ZHANG Guanling WU Chuan SU | 2007 | Acta Biochimica et Biophysica Sinica2007，39，10： | 2 |
| 5 | Unimodal productivity-biodiversity relationship along the gradient of multidimensional resources across Chinese grasslands显示文摘Resources can affect plant productivity and biodiversity simultaneously and thus are key drivers of their relationships in addition to plant-plant interactions.However,most previous studies only focused on a single resource while negle cting the nature of resource multidimensionality.Here we integrated four essential resources for plant growth into a single metric of resource diversity(RD)to investigate its effects on the productivity-biodiversity relationship(PBR)across Chinese grasslands.Results showed that habitats differing in RD have different PBRs—positive in low-resource habitats,but neutral in medium-and high-resource ones—while collectively,a weak positive PBR was observe d.However,when excluding direct effects of RD on productivity and biodiversity,the PBR in high-resource habitats became negative,which leads to a unimodal instead of a positive PBR along the RD gradient.By integrating resource effects and changing plant-plant interactions into a unified framework with the RD gradient,our work contributes to uncovering underlying me chanisms for inconsistent PBRs at large scales. | Yanfen Wang Jianqing Du Zhe Pang Yali Liu Kai Xue Yann Hautier Biao Zhang Li Tang Lili Jiang Baoming Ji Xingliang Xu Jing Zhang Ronghai Hu Shutong Zhou Fang Wang Rongxiao Che Di Wang Chaoting Zhou Xiaoyong Cui Nico Eisenhauer Yanbin Hao | 2022 | National Science Review2022，9，12： | 2 |
| 6 | Evenness is important in assessing progress towards sustainable development goals显示文摘Sustainable development goals(SDGs)emphasize a holistic achievement instead of cherry-picking a few.However,no assessment has quantitatively considered the evenness among all 17 goals.Here,we propose a systematic method,which first integrates both the evenness and the overall status of all goals,to distinguish the ideal development pathways from the uneven ones and then revisit the development trajectory in China from 2000 to 2015.Our results suggest that,despite the remarkable progress,a bottleneck has occurred in China since 2013 due to the stagnant developments in some SDGs.However,many far-reaching policies in China have been targeting these deficiencies since then,providing a perspective on how a country approaches sustainable development by promoting evenness among all SDGs.Our results also indicate that regions with the slowest progress are the developed provinces,owing to the persistent uneven status of all goals.Our study demonstrates the importance of adopting evenness in assessing and guiding sustainable development. | Yali Liu Jianqing Du Yanfen Wang Xiaoyong Cui Jichang Dong Yanbin Hao Kai Xue Hongbo Duan Anquan Xia Yi Hu Zhi Dong Bingfang Wu Xinquan Zhao Bojie Fu | 2021 | National Science Review2021，8，8： | 1 |
| 7 | Microorganisms of the High--Temperature Liaohe Oil/ield of China and Their Potential for MEOR显示文摘 | Nazina T N Xue Yanfen Wang Xiuyuan | 2000 | Resource Environ Biotechnol2000，3，1： | 1 |
| 8 | Biosynthesis, property comparison, and hemocompatibility of bacterial and haloarchaeal poly(3-hydroxybutyrate-co-3-hydroxyvalerate)显示文摘Polyhydroxyalkanoates(PHAs) are a class of natural biopolyesters accumulated intracellularly by many microorganisms. These polymers have attracted particular attention as green plastic in biomedical and industrial applications due to their good biodegradability and biocompatibility. Poly(3-hydroxybutyrate-co-3-hydroxyvalerate)(PHBV) is one of the most common members of PHAs. However, there is no report comparing the properties of PHBV from different groups of producers, e.g.,bacteria and haloarchaea. In this study, two types of PHBV copolymers were synthesized in Halogranum amylolyticum and Ralstonia eutropha, respectively, by feeding different carbon sources. They possessed a similar concentration of3 HV monomers(21 mol%) and were named PHBV-H(produced by H. amylolyticum) and PHBV-B(produced by R. eutropha) based on their source. Interestingly, they exhibited different behaviors especially in thermal stability, melting temperature, crystallinity percentage, and mechanical properties. Furthermore, the films of PHBV-Hand PHBV-B possessed different surface properties, such as surface roughness, wettability, and surface free energy.The value of hemolysis on the PHBV-H film was lower in comparison with the PHBV-B film, although both values were within the limit of 5 % permissible for biomaterials.Notably, few inactivated platelets adhered to the surface of the PHBV-H film, whereas numerous activated platelets were seen on film PHBV-B. These results indicated that PHBV-H was a better potential component of blood-contact biomaterials than PHBV-B. Our study clearly revealed that the properties of PHAs are source dependent and haloarchaeal species provide a new opportunity for the production of desired PHAs. | Youxi Zhao Zhiming Rao Yanfen Xue Ping Gong Yizhi Ji Yanhe Ma | 2015 | Science Bulletin2015，60，22： | 1 |
| 9 | Can Digital Intelligence and Cyber-Physical-Social Systems Achieve Global Food Security and Sustainability?显示文摘Plants sequester carbon through photosynthesis and provide primary productivity for the ecosystem. However, they also simultaneously consume water through transpiration, leading to a carbon-water balance relationship. Agricultural production can be regarded as a form of carbon sequestration behavior.From the perspective of the natural-social-economic complex ecosystem, excessive water usage in food production will aggravate regional water pressure for both domestic and industrial purposes. Hence, achieving a harmonious equilibrium between carbon and water resources during the food production process is a key scientific challenge for ensuring food security and sustainability. Digital intelligence(DI) and cyber-physical-social systems(CPSS) are emerging as the new research paradigms that are causing a substantial shift in the conventional thinking and methodologies across various scientific fields, including ecological science and sustainability studies. This paper outlines our recent efforts in using advanced technologies such as big data, artificial intelligence(AI), digital twins, metaverses, and parallel intelligence to model, analyze, and manage the intricate dynamics and equilibrium among plants, carbon, and water in arid and semiarid ecosystems. It introduces the concept of the carbon-water balance and explores its management at three levels: the individual plant level, the community level, and the natural-social-economic complex ecosystem level. Additionally, we elucidate the significance of agricultural foundation models as fundamental technologies within this context. A case analysis of water usage shows that, given the limited availability of water resources in the context of the carbon-water balance, regional collaboration and optimized allocation have the potential to enhance the utilization efficiency of water resources in the river basin. A suggested approach is to consider the river basin as a unified entity and coordinate the relationship between the upstream, midstream and downstream areas. Furthermore, establishing mechanisms for water resource transfer and trade among different industries can be instrumental in maximizing the benefits derived from water resources.Finally, we envisage a future of agriculture characterized by the integration of digital, robotic and biological farming techniques.This vision aims to incorporate small tasks, big models, and deep intelligence into the regular ecological practices of intelligent agriculture. | Yanfen Wang Mengzhen Kang Yali Liu Juanjuan Li Kai Xue Xiujuan Wang Jianqing Du Yonglin Tian Qinghua Ni Fei-Yue Wang | 2023 | IEEE/CAA Journal of Automatica Sinica2023，10，11： | 1 |
| 10 | Alkalimonas amylolytica gen. nov., sp. nov., and Alkalimonas delamerensis gen. nov., sp. nov., novel alkaliphilic bacteria from soda lakes in China and East Africa显示文摘 | Yanhe Ma Yanfen Xue William D. Grant Nadine C. Collins Andrew W. Duckworth Robert P. Steenbergen Brian E. Jones | 2004 | Extremophiles2004，，3： | 1 |
| 11 | Phylogenetic diversity of aerobic saprotrophic 显示文摘 | Nazina T N Grigoryan A A Xue Yanfen | 2002 | Microbiology2002，2002，： | 1 |
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