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| 1 | A promising new class of irradiation tolerant materials:Ti_2ZrHfV_(0.5)Mo_(0.2) high-entropy alloy显示文摘Recently, high-entropy alloys(HEAs) or multi-principal-element alloys with unprecedented physical,chemical, and mechanical properties, have been considered as candidate materials used in advanced reactors due to their promising irradiation resistant behavior. Here, we report a new single-phase bodycentered cubic(BCC) structured Ti_2 ZrHfV_(0.5)Mo_(0.2) HEA possessing excellent irradiation resistance, i.e.,scarcely irradiation hardening and abnormal lattice constant reduction after helium-ion irradiation,which is completely different from conventional alloys. This is the first time to report the abnormal XRD phenomenon of metallic alloys and almost no hardening after irradiation. These excellent properties make it to be a potential candidate material used as core components in next-generation nuclear reactors. The particular irradiation tolerance derives from high density lattice vacancies/defects. | Yiping Lu Hefei Huang Xuzhou Gao Cuilan Ren Jie Gao Huanzhi Zhang Shijian Zheng Qianqian Jin Yonghao Zhao Chenyang Lu Tongmin Wang Tingju Li | 2019 | Journal of Materials Science & Technology2019，35，3： | 23 |
| 2 | Optimization of stratification scheme for a fishery-independent survey with multiple objectives显示文摘Fishery-independent surveys are often used for collecting high quality biological and ecological data to support fisheries management. A careful optimization of fishery-independent survey design is necessary to improve the precision of survey estimates with cost-effective sampling efforts. We developed a simulation approach to evaluate and optimize the stratification scheme for a fishery-independent survey with multiple goals including estimation of abundance indices of individual species and species diversity indices. We compared the performances of the sampling designs with different stratification schemes for different goals over different months. Gains in precision of survey estimates from the stratification schemes were acquired compared to simple random sampling design for most indices. The stratification scheme with five strata performed the best. This study showed that the loss of precision of survey estimates due to the reduction of sampling efforts could be compensated by improved stratification schemes, which would reduce the cost and negative impacts of survey trawling on those species with low abundance in the fishery-independent survey. This study also suggests that optimization of a survey design differed with different survey objectives. A post-survey analysis can improve the stratification scheme of fishery-independent survey designs. | XU Binduo REN Yiping CHEN Yong XUE Ying ZHANG Chongliang WAN Rong | 2015 | Acta Oceanologica Sinica2015，34，12： | 21 |
| 3 | Plant Prime Editors Enable Precise Gene Editing in Rice Cells显示文摘Genome editing is revolutionizing plant research and crop breeding.Sequence-specific nucleases(SSNs)such as zinc finger nuclease(ZFN)and TAL effector nuclease(TALEN)have been used to create site-specific DNA double-strand breaks and to achieve precise DNA modifications by promoting homology-directed repair(HDR)(Steinert et al.,2016;Voytas,2013).Later,RNA-guided SSNs such as CRISPR-Cas9,Cas12a,Cas12b,and their variants were applied for genome editing in plants(Li et al.,2013;Nekrasov et alM 2013;Tang et al.,2017;Zhong et al.,2019;Ming et al.,2020;Tang et al.,2019).However,HDR relies on simultaneous delivery of SSNs and DNA donors,which has been challenging in plants(Steinert et al.,2016;Zhang et aL,2019).Another challenge for realizing efficient HDR in plants is that DNA repair favors nonhomologous end joining(NHEJ)pathways over HDR in most cell types(Puchta,2005;Qi et al.,2013). | Xu Tang Simon Sretenovic Qiurong Ren Xinyu Jia Mengke Li Tingting Fan Desuo Yin Shuyue Xiang Yachong Guo Li Liu Xuelian Zheng Yiping Qi Yong Zhang | 2020 | Molecular Plant2020，13，5： | 20 |
| 4 | Growth and Mortality of Small Yellow Croaker(Larimichthys polyactis) Inhabiting Haizhou Bay of China显示文摘Length frequency data of small yellow croaker(Larimichthys polyactis) were acquired from the survey vessel in May,July,September and December,2011 in Haizhou Bay of China.In this study,921 fish individuals were analyzed for the estimation of growth and mortality parameters.Between length and weight,the power coefficient b was 2.7321,2.9703,3.0418 and 2.7252 for the 4 surveying months,respectively.The estimated von Bertalanffy growth function parameters were 230mm(L ∞) and 0.26yr-1(K) as were calculated with ELEFAN method equipped in FiSAT computer package.With length-converted catch curve analysis,the total mortality rate(Z) and its 95% confidence interval were 2.16(1.69-2.64) yr-1,0.59(0.15-1.04) yr-1,1.16(0.80-1.52) yr-1 and 0.96(0.70-1.23) yr-1 for the 4 surveying months,respectively,with the pooled data the value was 1.15(0.81-1.48) yr-1.The natural mortality rate(M) was 0.516 yr-1 as was calculated with Pauly's equation(the annual average sea water temperature was 11℃).Therefore,fish mortality rate was 0.634 yr-1.The yield-per-recruit analysis indicated that when t c was 1,F max was 0.7 and F 0.1 was 0.55.Currently,the age at first capture is about 1 year and F current was 0.634.Therefore,F current was larger than F 0.1 and less than F max.This indicates that current fish mortality is at a dangerously high level.With Gulland method,the biological reference point for fishery(F opt) was estimated as 0.516 yr-1,lower than current fish mortality.Accordingly,reducing catch in the region was strongly recommended. | LIU Qun XU Binduo YE Zhenjiang REN Yiping | 2012 | Journal of Ocean University of China2012，11，4： | 17 |
| 5 | Improving Plant Genome Editing with High-Fidelity xCas9 and Non-canonical PAM-Targeting Cas9-NG显示文摘Two recently engineered SpCas9 variants, namely xCas9 and Cas9-NG, show promising potential in improving targeting specificity and broadening the targeting range. In this study, we evaluated these Cas9 variants in the model and crop plant, rice. We first tested xCas9-3.7, the most effective xCas9 variant in mammalian cells, for targeted mutagenesis at 16 possible NGN PAM (protospacer adjacent motif) combinations in duplicates. xCas9 exhibited nearly equivalent editing efficiency to wild-type Cas9 (Cas9-WT) at most canonical NGG PAM sites tested, whereas it showed limited activity at non-canonical NGH (H = A, C, T) PAM sites. High editing efficiency of xCas9 at NGG PAMs was further demonstrated with C to T base editing by both rAPOBECI and PmCDAI cytidine deaminases. With mismatched sgRNAs, we found that xCas9 had improved targeting specificity over the Cas9-WT. Furthermore, we tested two Cas9-NG variants, Cas9-NGv1 and Cas9-NG, for targeting NGN PAMs. Both Cas9-NG variants showed higher editing efficiency at most non-canonical NG PAM sites tested, and enabled much more efficient editing than xCas9 at AT-rich PAM sites such as GAT, GAA, and CAA. Nevertheless, we found that Cas9-NG variants showed significant reduced activity at the canonical NGG PAM sites. In stable transgenic rice lines, we demonstrated that Cas9-NG had much higher editing efficiency than Cas9-NGv1 and xCas9 at NG PAM sites. To expand the base-editing scope, we developed an efficient C to T base-editing system by making fusion of Cas9-NG nickase (D10A version), PmCDAI, and UGI. Taken together, our work benchmarked xCas9 as a high-fidelity nuclease for targeting canonical NGG PAMs and Cas9-NG as a preferred variant for targeting relaxed PAMs for plant genome editing. | Zhaohui Zhong Simon Sretenovic Qiurong Ren Lijia Yang Yu Bao Caiyan Qi Mingzhu Yuan Yao He Shishi Liu Xiaopei Liu Jiaheng Wang Lan Huang Yan Wang Dibin Baby David Wang Tao Zhang Yiping Qi Yong Zhang | 2019 | Molecular Plant2019，12，7： | 13 |
| 6 | Plant Genome Editing Using FnCpfl and LbCpf Nucleases at Redefined and Altered PAM-Sites显示文摘 | ZhaohuiZhong Yingxiao Zhang Qi You XU Tang Qiurong Ren Shishi Liu Lijia Yang Yan Wang Xiaopei Liu Binglin Liu Tao Zhang Xuelian Zheng Ysa Le Yong Zhang Yiping Qi | 2018 | Molecular Plant2018，11，7： | 10 |
| 7 | Dynamics of ecosystem carbon stocks during vegetation restoration on the Loess Plateau of China显示文摘In the last few decades, the Loess Plateau had experienced an extensive vegetation restoration to reduce soil erosion and to improve the degraded ecosystems. However, the dynamics of ecosystem carbon stocks with vegetation restoration in this region are poorly understood. This study examined the changes of carbon stocks in mineral soil(0–100 cm), plant biomass and the ecosystem(plant and soil) following vegetation restoration with different models and ages. Our results indicated that cultivated land returned to native vegetation(natural restoration) or artificial forest increased ecosystem carbon sequestration. Tree plantation sequestered more carbon than natural vegetation succession over decades scale due to the rapid increase in biomass carbon pool. Restoration ages had different effects on the dynamics of biomass and soil carbon stocks. Biomass carbon stocks increased with vegetation restoration age, while the dynamics of soil carbon stocks were affected by sampling depth. Ecosystem carbon stocks consistently increased after tree plantation regardless of the soil depth; but an initial decrease and then increase trend was observed in natural restoration chronosequences with the soil sampling depth of 0–100 cm. Moreover, there was a time lag of about 15–30 years between biomass production and soil carbon sequestration in 0–100 cm, which indicated a long-term effect of vegetation restoration on deeper soil carbon sequestration. | WANG Kaibo DENG Lei REN Zongping SHI Weiyu CHEN Yiping SHANG-GUAN Zhouping | 2016 | Journal of Arid Land2016，8，2： | 7 |
| 8 | A mass balanced model of trophic structure and energy flows of a semi-closed marine ecosystem显示文摘The marine ecosystem of the Jiaozhou Bay has degraded significantly in fisheries productivity and its ecological roles as spawning and nursery ground for many species of commercial importance has been declining in recent years. A mass-balanced trophic model was developed using Ecopath with Ecosim to evaluate the trophic structure of the Jiaozhou Bay for improving ecosystem management. The model were parameterized based on the fisheries survey data in the Jiaozhou Bay in 2011, including 23 species groups and one detritus group according to their ecological roles. The trophic levels of these ecological groups ranged from 1(primary producers and detritus) to4.3(large demersal fishes). The estimated total system throughput was 12 917.10 t/(km^2·a), with 74.59% and25.41% contribution of the total energy flows from phytoplankton and detritus, respectively. Network analyses showed that the overall transfer efficiency of the ecosystem was 14.4%, and the mean transfer efficiency was 14.5%for grazing food chain and 13.9% for detritus food chain. The system omnivory index(SOI), Finn's cycled index(FCI) and connectance index(CI) were relatively low in this area while the total primary production/total respiration(TPP/TR) was high, indicating an immature and unstable status of the Jiaozhou Bay ecosystem. Mixed trophic impact analysis revealed that the cultured shellfish had substantial negative impacts on most functional groups. This study contributed to ecosystem-level evaluation and management planning of the Jiaozhou Bay ecosystem. | HAN Dongyan XUE Ying ZHANG Chongliang REN Yiping | 2017 | Acta Oceanologica Sinica2017，36，10： | 7 |
| 9 | Erlotinib versus chemotherapy as first-line treatment for patients with advanced EGFR mutation-positive non-small-cell lung cancer (OPTIMAL, CTONG-0802): a multicentre, open-label, randomised, phase 3 study显示文摘 | Caicun Zhou Yi-Long Wu Gongyan Chen Jifeng Feng Xiao-Qing Liu Changli Wang Shucai Zhang Jie Wang Songwen Zhou Shengxiang Ren Shun Lu Li Zhang Chengping Hu Chunhong Hu Yi Luo Lei Chen Ming Ye Jianan Huang Xiuyi Zhi Yiping Zhang Qingyu Xiu Jun Ma Li Zhang C | 2011 | Lancet Oncology2011，，8： | 7 |
| 10 | Enhanced antibacterial behavior of a novel Cu-bearing high-entropy alloy显示文摘Contact infection of bacteria and viruses has been a critical threat to human health. The worldwideoutbreak of COVID-19 put forward urgent requirements for the research and development of the selfantibacterial materials, especially the antibacterial alloys. Based on the concept of high-entropy alloys, thepresent work designed and prepared a novel Co_(0.4)FeCr_(0.9)Cu_(0.3) antibacterial high-entropy alloy with superior antibacterial properties without intricate or rigorous annealing processes, which outperform the antibacterial stainless steels. The antibacterial tests presented a 99.97% antibacterial rate against Escherichiacoli and a 99.96% antibacterial rate against Staphylococcus aureus after 24 h. In contrast, the classic antibacterial copper-bearing stainless steel only performed the 71.50% and 80.84% antibacterial rate, respectively. The results of the reactive oxygen species analysis indicated that the copper ion release and theimmediate contact with copper-rich phase had a synergistic effect in enhancing antibacterial properties.Moreover, this alloy exhibited excellent corrosion resistance when compared with the classic antibacterialstainless steels, and the compression test indicated the yield strength of the alloy was 1015 MPa. Thesefindings generate fresh insights into guiding the designs of structure-function-integrated antibacterial alloys. | Guangyu Ren Lili Huang Kunling Hu Tianxin Li Yiping Lu Dongxu Qiao Haitao Zhang Dake Xu Tongmin Wang Tingju Li Peter K.Liaw | 2022 | Journal of Materials Science & Technology2022，，22： | 6 |
| 11 | Optimization of environmental variables in habitat suitability modeling for mantis shrimp Oratosquilla oratoria in the Haizhou Bay and adjacent waters显示文摘Habitat suitability index(HSI)models have been widely used to analyze the relationship between species abundance and environmental factors,and ultimately inform management of marine species.The response of species abundance to each environmental variable is different and habitat requirements may change over life history stages and seasons.Therefore,it is necessary to determine the optimal combination of environmental variables in HSI modelling.In this study,generalized additive models(GAMs)were used to determine which environmental variables to be included in the HSI models.Significant variables were retained and weighted in the HSI model according to their relative contribution(%)to the total deviation explained by the boosted regression tree(BRT).The HSI models were applied to evaluate the habitat suitability of mantis shrimp Oratosquilla oratoria in the Haizhou Bay and adjacent areas in 2011 and 2013–2017.Ontogenetic and seasonal variations in HSI models of mantis shrimp were also examined.Among the four models(non-optimized model,BRT informed HSI model,GAM informed HSI model,and both BRT and GAM informed HSI model),both BRT and GAM informed HSI model showed the best performance.Four environmental variables(bottom temperature,depth,distance offshore and sediment type)were selected in the HSI models for four groups(spring-juvenile,spring-adult,falljuvenile and fall-adult)of mantis shrimp.The distribution of habitat suitability showed similar patterns between juveniles and adults,but obvious seasonal variations were observed.This study suggests that the process of optimizing environmental variables in HSI models improves the performance of HSI models,and this optimization strategy could be extended to other marine organisms to enhance the understanding of the habitat suitability of target species. | Yunlei Zhang Huaming Yu Haiqing Yu Binduo Xu Chongliang Zhang Yiping Ren Ying Xue Lili Xu | 2020 | Acta Oceanologica Sinica2020，39，6： | 5 |
| 12 | Isozyme Analysis on the Populations of Ruditapes philippinarum显示文摘水平淀粉胶化电气泳动被用来在中国的海岸调查 Ruditapes philippinarum 的六张人口的基因结构。七酶揭示了十一通常认为的 loci,并且他们中的七个是多态的, PGM~* , MDH-1~* , MDH-3~* , LAP-1~* , LAP-2~* , MPI-1~* 并且 MPI-2~* 。R 的多态的 loci 的比例。philippinarum 人口变化了从 0.454 5 ~ 0.636 4。观察并且期望的杂合现象的价值从 0.0394 ~ 0.154 5 并且从 0.1111 ~ 0.238 5 分别地。Nei “基因距离从 0.003 3to 改变了的 s 0.025 3 与一般水准 0.013 5。R.philippinarum 的基因差异高,这被建议。 | REN Yiping GAO Tianxiang YANG Tianyan | 2006 | Journal of Ocean University of China2006，5，1： | 4 |
| 13 | Fish species diversity in the Huanghe Estuary显示文摘This paper lists 50 fish specs in the Huanghe Estuary, which belong to 9 orders, 22 families and 37 genera. The paper describes the seasonal distributions of these fish species and the succession of the important fish species during the past 50 a. The authors discuss the main factors that have resulted in the changes in fish species diversity and the fishery resources. These include the overexploitation of the fishery and the sharp reduction in the fresh water discharges from the Huanghe River. | Chen Dagang, Jiao Yan, Liu Qun, Zeng Xiaoqi, Ren Yiping (Department of Fisheries,Ocean University of Qingdao, Qingdao 266003, China.) | 2000 | Acta Oceanologica Sinica2000，19，4： | 4 |
| 14 | Mineralogy and geochemistry of a superhigh-organic-sulfur coal, Yanshan Coalfield, Yunnan, China: Evidence for a volcanic ash component and influence by submarine exhalation显示文摘 | Shifeng Dai Deyi Ren Yiping Zhou Chen-Lin Chou Xibo Wang Lei Zhao Xingwei Zhu | 2008 | Chemical Geology2008，，1： | 3 |
| 15 | Comparison of sampling effort allocation strategies in a stratified random survey with multiple objectives显示文摘Stratified random survey is commonly used to estimate abundance indices of fish populations in multispecies survey,providing reliable data for stock assessment and fisheries management.In some cases,however,the sample size is relatively small because of the limitation of survey cost or other factors.The allocation methods of sampling efforts among strata in stratified random surveys with small sample size may need adjustment compared with traditional approaches.In this study,two sampling stations were allocated to each stratum first and then the remaining sampling units were allocated among strata using five traditional allocation methods.In order to distinguish them from traditional methods,we called them adjusted methods in this study.A simulation study was conducted to compare the performances of different allocation strategies of sampling efforts in a stratified random survey for estimating abundance indices of multiple target species.Relative estimation error(REE)and relative bias(RB)were used to measure the precision and accuracy of estimates of abundance indices under different allocation schemes of sampling efforts in the multispecies survey.The performances of different allocation schemes in estimating abundance indices varied greatly for different species over different seasons.The adjusted Neyman allocation scheme could significantly reduce the REE and RB of estimates of abundance index for single species survey.For multiple species surveys,the adjusted average-Neyman allocation method,the adjusted Yate allocation method,the adjusted proportional allocation method and current allocation method had relatively high accuracy and precision of estimates of abundance indices for four species in terms of the total_(REE) and total_(RB).Though the adjusted average-Neyman allocation scheme did not always have the best performance,it was the optimal one considering the accuracy and precision of estimates of abundance indices for all species simultaneously.The allocation of sampling efforts among strata in stratified random surveys targeting for estimating abundance indices of multiple species should comprehensively consider the variance of abundance of different species in stratum and the seasonal changes. | Guosheng Zhang Jing wang Ying Xue Chongliang Zhang Binduo Xu Yuan Cheng Yiping Ren | 2020 | Aquaculture and Fisheries2020，5，3： | 3 |
| 16 | Evaluating multispecies survey designs using a joint species distribution model显示文摘Survey designs should be efficient as marine survey programs are usually expensive and time-consuming;however,surveys have rarely been evaluated for multiple species.In the present study,we evaluated multispecies fisheries surveys with respect to three influential factors,i.e.,sampling methods,estimation methods and sample size.A joint species distribution model(JSDM)developed in north Yellow Sea,China was used as the operating model to simulate the spatial distribution of multiple species simultaneously.We examined the precision of multispecies abundance estimation using diverse sampling methods[random sampling(RDS),systematic sampling(SYS),stratified random sampling(SRS),generalized random-tessellation stratified sampling(GRT)and spatial coverage sampling(SPC)],estimation methods[arithmetic mean(Arm),universal kriging(Ukr),multivariate distribution model(Mvd),and boral model(Brm)],and a range of sample sizes(from 30 to 300).The results showed significant differences in estimation among sampling methods,where GRT and SYS yielded less relative absolute bias(RAB)over all and RDS showed the least precision.Regarding estimation methods,Mvd and Arm showed the best performances and Brm yielded the least precision.Significant interactions existed between sampling and estimation methods.Arm worked best with GRT,likewise Mvd with SYS and Ukr with SPC.SPC and Mvd showed the best performances for a small sample size(N=30),and all sampling and estimation methods provided similar results for a large sample size(N=300).Generally,doubling sample size resulted in a decrease of RAB by 0.097 on average,a rate depending on species,sampling and estimation methods.This study contributed to an integrative framework for evaluating designs of multispecies fisheries surveys. | Chongliang Zhang Binduo Xu Ying Xue Yiping Ren | 2020 | Aquaculture and Fisheries2020，5，3： | 3 |
| 17 | Simultaneous determination of multi-component mycotoxin contaminants in foods and feeds by ultra-performance liquid chromatography tandem mass spectrometry显示文摘 | Yiping Ren Yu Zhang Shuangliang Shao Zengxuan Cai Liang Feng Hongfeng Pan Zhigang Wang | 2006 | Journal of Chromatography A2006，，1： | 3 |
| 18 | Geochemistry of trace elements in Chinese coals: A review of abundances, genetic types, impacts on human health, and industrial utilization显示文摘 | Shifeng Dai Deyi Ren Chen-Lin Chou Robert B. Finkelman Vladimir V. Seredin Yiping Zhou | 2011 | International Journal of Coal Geology2011，，： | 3 |
| 19 | Beak Measurements of Octopus (Octopus variabilis) in Jiaozhou Bay and Their Use in Size and Biomass Estimation显示文摘Cephalopods play key roles in global marine ecosystems as both predators and preys.Regressive estimation of original size and weight of cephalopod from beak measurements is a powerful tool of interrogating the feeding ecology of predators at higher trophic levels.In this study,regressive relationships among beak measurements and body length and weight were determined for an octopus species(Octopus variabilis),an important endemic cephalopod species in the northwest Pacific Ocean.A total of 193 individuals(63 males and 130 females) were collected at a monthly interval from Jiaozhou Bay,China.Regressive relationships among 6 beak measurements(upper hood length,UHL;upper crest length,UCL;lower hood length,LHL;lower crest length,LCL;and upper and lower beak weights) and mantle length(ML),total length(TL) and body weight(W) were determined.Results showed that the relationships between beak size and TL and beak size and ML were linearly regressive,while those between beak size and W fitted a power function model.LHL and UCL were the most useful measurements for estimating the size and biomass of O.variabilis.The relationships among beak measurements and body length(either ML or TL) were not significantly different between two sexes;while those among several beak measurements(UHL,LHL and LBW) and body weight(W) were sexually different.Since male individuals of this species have a slightly greater body weight distribution than female individuals,the body weight was not an appropriate measurement for estimating size and biomass,especially when the sex of individuals in the stomachs of predators was unknown.These relationships provided essential information for future use in size and biomass estimation of O.variabilis,as well as the estimation of predator/prey size ratios in the diet of top predators. | XUE Ying REN Yiping MENG Wenrong LI Long MAO Xia HAN Dongyan MA Qiuyun | 2013 | Journal of Ocean University of China2013，12，3： | 2 |
| 20 | A high-Tc dc-SQUID-based single-channel MCG and its performance显示文摘A single-channel high-Tc dc-SQUID magnetometer and gradiometer have been developed to record the magnetic field component perpendicular to the human chest generated by heart-beat. Magnetocardiogram (MCG) measurements have been carried out inside a magnetically shielded room. By sequentially adjusting a non-magnetic patient table with 5 cm pitch in X and Y directions, the field signals on a rectangle grid 5×5 over the chest area were registered in real time trace point by point with a typical dwell time over 30 cardiocycles each. Utilizing standard electrocardiogram (ECG) recordings as timing reference measured simultaneously with the MCG signals, the MCG data were then averaged and combined to form magnetic field patterns every 10 ms or so. Both the current dipole, which is parallel to MCG measuring plane and produces the vertical magnetic field, and its depth were determined as a function of time in a standard way. We have compared the MCG of healthy hearts with that of a heart with right bundle | WANG Huiwu DING Hongsheng ZHANG Lihua HUANG Xuguang CHEN Weichang WANG Ziqiang FENG Ji LIU Yiping ZHAO Shiping REN Yufeng YU Hongwei XU Fengzhi WANG Xiaoyin CHEN Genghua YANG Qiansheng | 2002 | Chinese Science Bulletin2002，47，22： | 2 |
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