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| 1 | A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants显示文摘CRISPR/Cas9 染色体指向系统被用于许多种类。然而,为植物报导的 mostCRISPR/Cas9 系统能仅仅修改一个或一些指向地点。这里,我们报导一个柔韧的 CRISPR/Cas9 向量系统,利用植物 codon 优化了 Cas9 基因,为方便、高效率的复合染色体在 monocot 和 dicot 植物编辑。我们设计了基于 PCR 的过程很快产生多重 sgRNA 表达式盒子,它能在一个轮由金门结扎或吉布森汇编克隆被装配进二进制 CRISPR/Cas9 向量。与这个系统,我们与 85.4% 变化评估的一般水准在米饭编辑了 46 个目标地点,主要在 biallelic 和同型结合的地位。我们推想在米饭的大约 16% 同型结合的变化通过相应基于再结合的修理跟随的非相应的加入结束的机制被产生。我们也获得了一致 biallelic,在 Arabidopsis T 1 植物的异质接合、同型结合、妄想的变化。在米饭和 Arabidopsis 的指向的变化是可继承的。我们在 T 0 米饭和 T 1 由同时的指向的 Arabidopsis 植物多重(多达八) 一个基因家庭,在一条 biosynthetic 小径的多重基因,或在单个基因的多重地点的成员。这个系统为为基本研究和基因改进在植物学习多重基因和基因家庭的功能提供了一个万用的工具箱。 | Xingliang Ma Qunyu Zhang Qinlong Zhu Wei Liu Yan Chen Rong Qiu Bin Wang Zhongfang Yang Heying Li Yuru Lin Yongyao Xie Rongxin Shen Shuifu Chen Zhi Wang Yuanling Chen Jingxin Guo Letian Chen Xiucai Zhao Zhicheng Dong Yao-Guang Liu | 2015 | Molecular Plant2015，8，8： | 272 |
| 2 | Development of "Purple Endosperm Rice" by Engineering Anthocyanin Biosynthesis in the Endosperm with a High-Efficiency Transgene Stacking System显示文摘Anthocyanins 在主食庄稼的 anthocyanin 生合成的高抗氧化剂活动,和工程例如米饭(Oryza sativa L.) ,能为改进人的健康提供支持健康的食物。然而,为 biofortification 设计新陈代谢的小径仍然保持困难,并且因为它的 biosynthetic 小径的复杂基因规章的网络,在米饭内乳设计 anthocyanin 生产的以前的尝试失败了。在这研究,我们为叠的 transgene 开发了一个高效率的向量系统并且使用了它在米饭内乳设计 anthocyanin 生合成。我们做了包含内乳特定的倡导者驾驶的八 anthocyanin 相关的基因(从从薄荷科植物的玉米和六结构的基因 ?的二规章的基因) 的构造,加为标记切除的一个可选的标记和基因。有这构造的米饭的转变产生了新奇 biofortified germplasm 紫色内乳瑞斯(用汉语的叫的 Zijingmi ) ,它在内乳有高 anthocyanin 内容和抗氧化剂活动。这 anthocyanin 生产源于 transgenes 和产生激活的表示(或改进) 13 内长的 anthocyanin 生合成基因的表示,那是 silenced 或在野类型的米饭内乳在底层表示。这研究为叠的 transgene 提供一个有效、万用的工具箱并且为一条复杂生物小径的成功的工程表明它的使用,建议为在工厂的农学的特点的合成生物学和改进的这个工具箱的潜在的用途。 | Qinlong Zhu Suize Yu Dongchang Zeng Hongmei Liu Huicong Wang Zhongtang Yang Xianrong Xie Rongxin Shen Jiantao Tan Heying Li Xiucai Zhao Qunyu Zhang Yuanling Chen Jingxing Guo Letian Chen Yao-Guang Liu | 2017 | Molecular Plant2017，10，7： | 47 |
| 3 | From Golden Rice to aSTARice:Bioengineering Astaxanthin Biosynthesis in Rice Endosperm显示文摘Carotenoids are important phytonutrients with antioxidant properties,and are widely used in foods and feedstuffs as Supplements.Astaxanthin,a red-colored ketocarotenoid,has strong antioxidant activity and thus can benefit human health.However,astaxanthin is not produced in most higher plants.Here we report the bioengineering of astaxanthin biosynthesis in rice endosperm by introducing four synthetic genes,sZmPSY1,sPaCrtl,sCrBKT,and sHpBHY,which encode the enzymes phytoene synthase,phytoene desaturase,β-carotene ketolase,and β-carotene hydroxylase,respectively.Transgneic overexpression of two (sZmPSY1 and sPaCrtl),three (sZmPSY1,sPaCrtl and sCrBKT),and all these four genes driven by rice endosperm-specific promoters established the Carotenoid/ketocarotenoid/astaxanthin biosynthetic pathways in the endosperm and thus resulted in various types of germplasm,from the yellow-grained β-caro- tene-enriched Golden Rice to orange-red-grained Canthaxanthin Rice and Astaxanthin Rice,respectively. Grains Of Astaxanthin Rice were enriched with astaxanthin in the endosperm and had higher antioxidant activity.These results proved that introduction of a minimal set of four transgenes enables de novo biosynthesis of astaxanthin in therice endosperm.This work provides a Successful example for synthetic biology in plants and biofortification in crops;the biofortified rice products generated by this study could be consumed as health-promoting foods and processed tO produce dietary supplements. | Qinlong Zhu Dongchang Zeng Suize Yu Chaojun Cui Jiamin Li Heying Li Junyu Chen Runzhao Zhang Xiucai Zhao Letian Chen Yao-Guang Liu | 2018 | Molecular Plant2018，11，12： | 35 |
| 4 | Multi-step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes显示文摘新基因起源是授与 phenotypic 变化和生物差异的 genomic 革新的主要来源。在植物的新 mitochondrial 基因的产生可以引起细胞质的男绝育(厘米) ,它能支持 outcrossing 和增加健康。然而, mitochondrial 基因怎么在结构和功能发源并且演变,仍然保持不清楚。米饭厘米的野未成功的类型被 mitochondrial 基因 WA352c (以前命名的 WA352 ) 授与并且广泛地在混合米饭繁殖被利用了。这里,我们重建由 11 mitochondrial genomic recombinant 的鉴定和分析的 WA352c 的进化轨道在野、栽培的米饭与 WA352c 有关组织。我们推断这些结构在野米饭 Oryza rufipogon,结合的 substoichiometric 变和顺序变化的 mitochondrial 染色体在保存 mitochondrial 序列之中通过多重重新整理产生了。我们鉴别二表示了,但是在这些结构之中的 nonfunctional protogenes,和他们能发展进功能的厘米基因经由的表演定序能减轻蛋白质的自我禁止的潜力的变化。这些顺序变化将资助蛋白质与编码原子核的 mitochondrial 蛋白质 COX11 交往的能力,在花药 tapetum 和男绝育导致早熟的规划房间死亡。而且,我们证明把 COX11 相互作用领域编码为这些 WA352c 相关的基因的序列经历了在进化期间净化选择。我们经由在结构,顺序,拷贝数字,和功能包含渐渐的变化的 multi-recombination/protogene formation/functionalization 机制为新厘米基因的形成和进化建议一个模型。 | Huiwu Tang Xingmei Zheng Chuliang Li Xianrong Xie Yuanling Chen Letian Chen Xiucai Zhao Huiqi Zheng Jiajian Zhou Shan Ye Jingxin Guo Yao-Guang Liu | 2017 | Cell Research2017，27，1： | 11 |
| 5 | Predictors of healthcare-seeking behavior among Chinese patients with irritable bowel syndrome显示文摘AIM To analyze predictors of healthcare-seeking behavior among Chinese patients with irritable bowel syndrome(IBS) and their satisfaction with medical care.METHODS Participating patients met IBS Rome Ⅲ criteria(excluding those with organic diseases) and were enrolled in an IBS database in a tertiary university hospital. Participants completed IBS questionnaires in face-to-face interviews. The questionnaires covered intestinal and extra-intestinal symptoms, medical consultations, colonoscopy,medications, and self-reported response to medications during the whole disease course and in the past year. Univariate associations and multivariate logistic regression were used to identify predictors for frequent healthcareseeking behavior(≥ 3 times/year), frequent colonoscopies(≥ 2 times/year), long-term medications, and poor satisfaction with medical care.RESULTS In total, 516 patients(293 males, 223 females) were included. Participants' average age was 43.2 ± 11.8 years. Before study enrollment, 55.2% had received medical consultations for IBS symptoms. Ordinary abdominal pain/discomfort(non-defecation) was an independent predictor for healthcare-seeking behavior(OR = 2.07, 95%CI: 1.31-3.27). Frequent colonoscopies were reported by 14.7% of patients(3.1 ± 1.4 times per year). Sensation of incomplete evacuation was an independent predictor for frequent colonoscopies(OR = 2.76, 95%CI: 1.35-5.67). During the whole disease course, 89% of patients took medications for IBS symptoms, and 14.7% reported they were satisfied with medical care. Patients with anxiety were more likely to report dissatisfaction with medical care(OR = 2.08, 95%CI: 1.20-3.59). In the past year, patients with severe(OR = 1.74, 95%CI: 1.06-2.82) and persistent(OR = 1.66, 95%CI: 1.01-2.72) IBS symptoms sought medical care more frequently.CONCLUSION Chinese patients with IBS present high rates of frequent healthcare-seeking behavior, colonoscopies, and medications, and low satisfaction with medical care. Intestinal symptoms are major predictors for healthcare-seeking behavior. | Wenjuan Fan Dong Xu Min Chang Liming Zhu Guijun Fei Xiaoqing Li Xiucai Fang | 2017 | World Journal of Gastroenterology2017，23，42： | 5 |
| 6 | Shortened snRNA promoters for efficient CRISPR/Cas-based multiplex genome editing in monocot plants显示文摘Dear Editor,CRISPR(clustered regularly interspaced short palindromic repeats)/Cas genome editing is a powerful tool for introducing specific mutations in organisms including plants.The system is composed of a nuclease such as Cas9 or Cas12a and an engineered single-guide RNA(sgRNA)incorporating a target sequence(Li et al.,2019).A Cas9/sgRNA complex recognizes its target site in the genome,resulting in a mutation at that site. | Yu Hao Wubei Zong Dongchang Zeng Jingluan Han Shuifu Chen Jianian Tang Zhe Zhao Xiaojuan Li Kun Ma Xianrong Xie Qinlong Zhu Yuanling Chen Xiucai Zhao Jingxin Guo Yao-Guang Liu | 2020 | Science China(Life Sciences)2020，63，6： | 4 |
| 7 | Toll-like receptors 2 and 4 mediate the capacity of mesenchymal stromal cells to support the proliferation and differentiation of CD34 + cells显示文摘 | Xingbing Wang Qiansong Cheng Lailing Li Jian Wang Liang Xia Xiucai Xu Zimin Sun | 2011 | Experimental Cell Research2011，，3： | 2 |
| 8 | Progress on the table grape breeding in foreign during the past 20 years显示文摘 | FAN Xiucai ZHANG Ying JIANG Jianfu SUN Haisheng LI Min LIU Chonghuai | 2011 | Sino-Overseas Grapevine&Wine2011，，2： | 1 |
| 9 | Field evaluation of grape germplasm resources on cold damage in Zhengzhou显示文摘 | FAN Xiucai LIU Chonghuai ZHANG Ying JIANG Jianfu SUN Haisheng LI Min | 2011 | Sino-Overseas Grapevine&Wine2011，，9： | 1 |
| 10 | Plant regeneration from in vitro leaves of the peach rootstock ' Nemaguard' (Prunus persicaXP, davidiana) 显示文摘 | HOUCHENG ZHOU MING LI XIA ZHAO XIUCAI FAN AI- GUANG GUO | 2010 | Plant Cen Tissue and Organ Culture2010，101，： | 1 |
| 11 | DCZ3301, a novel aryl-guanidino inhibitor, induces cell apoptosis and cell cycle arrest via suppressing the PI3K/AKT pathway in T-cell leukemia/lymphoma显示文摘 | Wenqin Xiao Bo Li Xi Sun Dandan Yu Yongsheng Xie Huiqun Wu Shuaikang Chang Yunfei Zhou Houcai Wang Xiucai Lan Zhijian Xu Jumei Shi Weiliang Zhu | 2018 | Acta Biochimica et Biophysica Sinica2018，50，7： | 1 |
| 12 | Neoproterozoic Crustal Reworking and Growth in the Zhangbaling Uplift, Tan-Lu Fault Zone: Evidence from the Feidong Complex and Zhangbaling Group显示文摘Intensive mid-Neoproterozoic magmatism is the salient feature of the Yangtze Block,preserving abundant information about crustal reworking and growth.Zircon U-Pb-Lu-Hf isotope analysis was performed on material from the Feidong Complex(FDC)and Zhangbaling Group(ZBLG)of the Zhangbaling Uplift,in order to determine the age and magmatic source of the Neoproterozoic igneous rocks as well as the detrital provenance for the sedimentary rocks,to further provide important data for understanding the mid-Neoproterozoic crustal evolution of the Northeast Yangtze Block.The amphibolite and gneissic granites in the Feidong Complex(FDC)gave similar protolith ages of 782-776 Ma.The synmagmatic zircons exhibited variable negativeεHf(t)values of-26.9 to-8.3.Early(ca.2.4 Ga)to late Paleoproterozoic(ca.2.0-1.9 Ga)inherited zircons were found in the gneissic monzogranite,with negativeεHf(t)values of-11.2 to-7.2,indicating strong reworking of the ancient crustal materials of the Northeast Yangtze Block.Whereas the amphibolites represent minor crustal growth through emplacement of continental rifting-related mafic magmas.The quartz-keratophyres in the Xileng Formation of the ZBLG in contrast systematically yield young protolith crystallization ages of 754-727 Ma with highεHf(t)values of-2.0 to+5.6,indicating their derivation from the reworking of juvenile crustal materials.The detrital zircons from the metasiltstone in the Beijiangjun Formation yield variable^(206)Pb/^(238)U ages(871-644 Ma)with a peak age at 741±11 Ma andεHf(t)values of-4.3 to+5.3,which is consistent with those of the Xileng Formation,but distinct from the FDC,indicating that the provenance of the metasiltstone is primarily the underlying Xileng Formation.The mid-Neoproterozoic igneous and sedimentary rocks of the Zhangbaling Uplift were products from continental rifting zones along the northern margin of the Yangtze Block,situated in different positions from the Susong Complex and the Haizhou Group.The transition from ancient to juvenile crustal sources for felsic magmatic rocks is attributed to gradually increased crustal extension during continental rifting. | NIU Manlan CAI Qianru WU Qi YUAN Xiaoyu SUN Yi LI Xiucai LI Chen ZHU Guang LI Zhensheng ZHANG Shuai | 2020 | Acta Geologica Sinica(English Edition)2020，94，6： | 1 |
| 13 | Cost-effective distributed FTFC for uncertain nonholonomic mobile robot fleet with collision avoidance and connectivity preservation显示文摘In this paper,the fault-tolerant formation control(FTFC)problem is investigated for a group of uncertain nonholonomic mobile robots with limited communication ranges and unpredicted actuator faults,where the communication between the robots is in a directed one-to-one way.In order to guarantee the connectivity preservation and collision avoidance among the robots,some properly chosen performance functions are incorporated into the controller to per-assign the asymmetrical bounds for relative distance and bearing angle between each pair of adjacent mobile robots.Particularly,the resultant control scheme remains at a costeffective level because its design does not use any velocity information from neighbors,any prior knowledge of system nonlinearities or any nonlinear approximator to account for them despite the presence of modeling uncertainties,unknown external disturbances,and unexpected actuator faults.Meanwhile,each follower is derived to track the leader with the tracking errors regarding relative distance and bearing angle subject to prescribed transient and steady-state performance guarantees,respectively.Moreover,all the closed-loop signals are ensured to be ultimately uniformly bounded.Finally,a numerical example is simulated to verify the effectiveness of this methodology. | Xiucai Huang Zhengguo Li Frank L.Lewis | 2023 | Journal of Automation and Intelligence2023，2，1： | 0 |
| 14 | Ectopic expression of a male fertility gene,LOGL8,represses LOG and hinders panicle and ovule development显示文摘Grain number and seed-setting rate are components of crop yield.Cytokinin influences grain yield.However,emerging studies suggest that high cytokinin signals often lead to reduced branching or seed-setting rate,leading to reduced grain yield,although the mechanisms remain unclear.In this study,we identified and characterized the rice(Oryza sativa L.)gene LONELY GUY-LIKE 8(LOGL8),based on analysis of the LOGL8-pm(promoter mutant of LOGL8)mutant,which harbors a T-DNA insertion in the promoter of this gene.The mutation in LOGL8-pm causes ectopic hyperexpression of LOGL8 in inflorescence organs,resulting in plants with smaller panicles and defective ovules lacking archesporial cells and integuments.Knockout of LOGL8 caused pollen abortion,leading to a reduced seed-setting rate.LOGL8 encodes a putative cytokinin-activating enzyme.Our results showed that LOGL8 directly catalyzes the biosynthesis of bioactive cytokinins.Therefore,we propose that the ectopic expression of LOGL8 disrupts cytokinin spatiotemporal distribution and causes inhibition of LONELY GUY(LOG),which affects panicle branching and female organ development.These findings reveal the important role of LOGL8 in male development,and highlight the delicate balance of local cytokinin levels during panicle branching and female organ development. | Shuifu Chen Sulin Lou Xiucai Zhao Shijuan Zhang Letian Chen Ping Huang Guande Li Yingying Li Yao-Guang Liu Yuanling Chen | 2022 | The Crop Journal2022，10，6： | 0 |
| 15 | QTL detection and candidate gene analysis of grape white rot resistance by interspecific grape (Vitis vinifera L. × Vitis davidii Foex.) crossing显示文摘Grape white rot,a devastating disease of grapevines caused by Coniella diplodiella(Speg.)Sacc.,leads to significant yield losses in grape.Breeding grape cultivars resistant to white rot is essential to reduce the regular use of chemical treatments.In recent years,Chinese grape species have gained more attention for grape breeding due to their high tolerance to various biotic and abiotic factors along with changing climatic conditions.In this study,we employed whole-genome resequencing(WGR)to genotype the parents of‘Manicure Finger’(Vitis vinifera,female)and‘0940’(Vitis davidii,male),along with 101 F1 mapping population individuals,thereby constructing a linkage genetic map.The linkage map contained 9337 single-nucleotide polymorphism(SNP)markers with an average marker distance of 0.3 cM.After 3 years of phenotypic evaluation of the progeny for white rot resistance,we confirmed one stable quantitative trait locus(QTL)for white rot resistance on chromosome 3,explaining up to 17.9%of the phenotypic variation.For this locus,we used RNA-seq to detect candidate gene expression and identified PR1 as a candidate gene involved in white rot resistance.Finally,we demonstrated that recombinant PR1 protein could inhibit the growth of C.diplodiella and that overexpression of PR1 in susceptible V.vinifera increased grape resistance to the pathogen. | Peng Li Xibei Tan Ruitao Liu Faiz Ur Rahman Jianfu Jiang Lei Sun Xiucai Fan Jihong Liu Chonghuai Liu Ying Zhang | 2023 | Horticulture Research2023，10，5： | 0 |
| 16 | An Early Paleozoic Ultramafic Complex in the North Wulan Metamorphic Complex,North Qaidam:Contraints on the Nature of the Alaskan-type Continental Arc Root显示文摘Orogenic peridotite is an important component of orogenic belts and retains crucial information on mantle magmatic activity,slab subduction,and melt or fluid metasomatism.To determine the source of the mantle-derived parental magma of the peridotite and to investigate the metasomatism that it experienced,we undertook an integrated study of the petrography,whole-rock major-and trace-element compositions,in situ zircon U-Pb geochronology,and mineral majorand trace-element compositions of an early Paleozoic ultramafic complex in the North Wulan area of North Qaidam.The Halihatu ultramafic-mafic complex is composed of dunite,pyroxene peridotite,and gabbro,which are characteristic of Alaskan-type complexes.The dunite yields a weighted mean^(206)Pb/^(238)U age of 479±5 Ma(MSWD=0.7),which reflects the age of the metasomatism rather than the crystallization age of the ultramafic magma.The peridotites have high Mg^(#)(89.8-91.8)and Cr contents(2419-5190 ppm),low Al_(2)O_(3)(0.20-1.68 wt%)and Ni(289-1012 ppm)contents,and high olivine Fo contents(87-91),suggesting a large degree(~15%-22%)of partial melting of lithospheric ultramafic rocks followed by variable degrees of fractional crystallization of olivine and pyroxene.This is consistent with estimates of 15%-22.3%partial melting calculated using the Cr#of spinel crystals and with the low Yb(0.04-0.33 ppm)and Y(0.72-1.29 ppm)contents of clinopyroxene crystals.Whole-rock trace-element patterns show enrichment in large ion lithophile elements and depletion in high field strength elements,along with high Al_(2)O_(3)(2.10-6.47 wt%)and low TiO_(2)(0.01-0.21 wt%)contents of clinopyroxene crystals,suggesting an arc magma cumulate trend.These features,along with the high olivine Fo contents(87-91 ppm),imply that the Halihatu peridotite is an Alaskan-type crustal cumulates derived from Mgrich hydrous basaltic melts.The high estimated f O_(2)(FMQ+1.97 to FMQ+3.81)further supports the idea that they formed in an arc setting.The Ni/Co and Ni/Mn ratios and cumulate textures of the olivine,quenched boundaries between mafic and felsic melts,and the occurrence of tremolite and phlogopite reflect interactions between the Halihatu peridotite and injected silicate and carbonatitic melts in the lower crust.Therefore,we propose a new cumulate-infiltration model for the petrogenesis of Alaskan-type ultramafic complexes,which improves our understanding of the nature of Alaskan-type continental arc root. | SHAN Jinming NIU Manlan LI Xiucai LI Chen WANG Lei ZHANG Shuai | 2023 | Acta Geologica Sinica(English Edition)2023，97，5： | 0 |
| 17 | Substrate screening for superclean graphene growth using firstprinciples calculations显示文摘Suppressing the formation of amorphous surface carbon and contaminants during the preparation of graphene by chemical vapor deposition remains an ongoing issue.Herein,we analyzed how substrate characteristics affect graphene quality by simulating margin extension,the nucleation process,and defect pegging configurations on mono-crystalline oriented metal substrates with the aim of enhancing graphene cleanliness.Defect formation energy and nucleation potential,which are indirect substrate–graphene interaction features,were found to appropriately evaluate graphene quality.The crystallographic orientation of the metal substrate was discovered to be critical for producing superclean graphene.A low graphene defect density and high nucleation rate on the Cu(100)facet guarantee growth of high-quality graphene,especially in terms of suppressing the formation of amorphous carbon.In addition,rapid kink growth and self-healing on the Cu(100)facet facilitate rapid graphene synthesis,which is also promoted by rapid kink splicing and margin self-repair on this facet.This study provides theoretical insight useful for the synthesis of superclean graphene. | Zhihao Li Xiucai Sun Xiaoli Sun Wan-Jian Yin Zhongfan Liu | 2024 | Nano Research2024，17，4： | 0 |
| 18 | Genome-Wide Association Study for Milled Grain Appearance Traits Using Multi-Parent Advanced Generation Intercross Population in Rice显示文摘The identification of loci and markers associated with milled grain appearance traits is essential for breeding high-yielding and good-quality rice variety.To detect stable loci for these characteristics,grain length(GL),grain width(GW),grain length/width(GLW),chalkiness degree(CD),chalky-grain rate(CR)and translucency degree(TD)of 378 rice lines were evaluated in three seasons.These lines were derived from a multi-parent advanced generation intercross(MAGIC)population. | LI Xiaoxiang LIU Jindong GUO Liang WEI Xiucai WANG Yamei PAN Xiaowu DONG Zheng LIU Wenqiang LIU Licheng MIN Jun LIU Sanxiong YE Guoyou LI Yongchao | 2023 | Rice science2023，30，5： | 0 |
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