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| 1 | A Robust CRISPR/Cas9 System for Convenient, High-Efficiency Multiplex Genome Editing in Monocot and Dicot Plants显示文摘CRISPR/Cas9 染色体指向系统被用于许多种类。然而,为植物报导的 mostCRISPR/Cas9 系统能仅仅修改一个或一些指向地点。这里,我们报导一个柔韧的 CRISPR/Cas9 向量系统,利用植物 codon 优化了 Cas9 基因,为方便、高效率的复合染色体在 monocot 和 dicot 植物编辑。我们设计了基于 PCR 的过程很快产生多重 sgRNA 表达式盒子,它能在一个轮由金门结扎或吉布森汇编克隆被装配进二进制 CRISPR/Cas9 向量。与这个系统,我们与 85.4% 变化评估的一般水准在米饭编辑了 46 个目标地点,主要在 biallelic 和同型结合的地位。我们推想在米饭的大约 16% 同型结合的变化通过相应基于再结合的修理跟随的非相应的加入结束的机制被产生。我们也获得了一致 biallelic,在 Arabidopsis T 1 植物的异质接合、同型结合、妄想的变化。在米饭和 Arabidopsis 的指向的变化是可继承的。我们在 T 0 米饭和 T 1 由同时的指向的 Arabidopsis 植物多重(多达八) 一个基因家庭,在一条 biosynthetic 小径的多重基因,或在单个基因的多重地点的成员。这个系统为为基本研究和基因改进在植物学习多重基因和基因家庭的功能提供了一个万用的工具箱。 | Xingliang Ma Qunyu Zhang Qinlong Zhu Wei Liu Yan Chen Rong Qiu Bin Wang Zhongfang Yang Heying Li Yuru Lin Yongyao Xie Rongxin Shen Shuifu Chen Zhi Wang Yuanling Chen Jingxin Guo Letian Chen Xiucai Zhao Zhicheng Dong Yao-Guang Liu | 2015 | Molecular Plant2015，8，8： | 272 |
| 2 | Small molecules for fat combustion: targeting obesity显示文摘Obesity is increasing in an alarming rate worldwide, which causes higher risks of some diseases, such as type 2 diabetes, cardiovascular diseases, and cancer. Current therapeutic approaches,either pancreatic lipase inhibitors or appetite suppressors, are generally of limited effectiveness. Brown adipose tissue(BAT) and beige cells dissipate fatty acids as heat to maintain body temperature, termed non-shivering thermogenesis; the activity and mass of BAT and beige cells are negatively correlated with overweight and obesity. The existence of BAT and beige cells in human adults provides an effective weight reduction therapy, a process likely to be amenable to pharmacological intervention. Herein, we combed through the physiology of thermogenesis and the role of BAT and beige cells in combating with obesity. We summarized the thermogenic regulators identified in the past decades, targeting G proteincoupled receptors, transient receptor potential channels, nuclear receptors and miscellaneous pathways.Advances in clinical trials were also presented. The main purpose of this review is to provide a comprehensive and up-to-date knowledge from the biological importance of thermogenesis in energy homeostasis to the representative thermogenic regulators for treating obesity. Thermogenic regulatorsmight have a large potential for further investigations to be developed as lead compounds in fighting obesity. | Jingxin Liu Yitao Wang Ligen Lin | 2019 | Acta Pharmaceutica Sinica B2019，9，2： | 18 |
| 3 | Identification of mecciRNAs and their roles in the mitochondrial entry of proteins显示文摘Mammalian mitochondria have small genomes encoding very limited numbers of proteins.Over one thousand proteins and noncoding RNAs encoded by the nuclear genome must be imported from the cytosol into the mitochondria.Here,we report the identification of hundreds of circular RNAs(mecciRNAs)encoded by the mitochondrial genome.We provide both in vitro and in vivo evidence to show that mecciRNAs facilitate the mitochondrial entry of nuclear-encoded proteins by serving as molecular chaperones in the folding of imported proteins.Known components involved in mitochondrial protein and RNA importation,such as TOM40 and PNPASE,interact with mecciRNAs and regulate protein entry.The expression of mecciRNAs is regulated,and these transcripts are critical for the adaption of mitochondria to physiological conditions and diseases such as stresses and cancers by modulating mitochondrial protein importation.mecciRNAs and their associated physiological roles add categories and functions to the known eukaryotic circular RNAs and shed novel light on the communication between mitochondria and the nucleus. | Xu Liu Xiaolin Wang Jingxin Li Shanshan Hu Yuqi Deng Hao Yin Xichen Bao Qiangfeng Cliff Zhang Geng Wang Baolong Wang Qinghua Shi Ge Shan | 2020 | Science China(Life Sciences)2020，63，10： | 15 |
| 4 | Effects of elevated CO_2 concentration and nitrogen supply on biomass and active carbon of freshwater marsh after two growing seasons in Sanjiang Plain, Northeast China显示文摘An experiments were carried out with treatments differing in nitrogen supply (0, 5 and 15 g N/m2) and CO2 levels (350 and 700 μmol/mol) using OTC (open top chamber) equipment to investigate the biomass of Calamagrostis angustifolia and soil active carbon contents after two years. The results showed that elevated CO2 concentration increased the biomass of C. angustifolia and the magnitude of response varied with each growth period. Elevated CO2 concentration has increased aboveground biomass by 16.7% and 17.6% during the jointing and heading periods and only 3.5% and 9.4% during dough and maturity periods. The increases in belowground biomass due to CO2 elevation was 26.5%, 34.0% and 28.7% during the heading, dough and maturity periods, respectively. The responses of biomass to enhanced CO2 concentrations are differed in N levels. Both the increase of aboveground biomass and belowground biomass were greater under high level of N supply (15 g N/m2). Elevated CO2 concentration also increased the allocation of biomass and carbon in root. Under elevated CO2 concentration, the average values of active carbon tended to increase. The increases of soil active soil contents followed the sequence of microbial biomass carbon (10.6%) > dissolved organic carbon (7.5%) > labile oxidable carbon (6.6%) > carbohydrate carbon (4.1%). Stepwise regressions indicated there were significant correlations between the soil active carbon contents and plant biomass. Particularly, microbial biomass carbon, labile oxidable carbon and carbohydrate carbon were found to be correlated with belowground biomass, while dissolved organic carbon has correlation with aboveground biomass. Therefore, increased biomass was regarded as the main driving force for the increase in soil active organic carbon under elevated CO2 concentration. | ZHAO Guangying LIU Jingshuang WANG Yang DOU Jingxin DONG Xiaoyong | 2009 | Journal of Environmental Sciences2009，21，10： | 13 |
| 5 | Rice functional genomics:decades'efforts and roads ahead显示文摘Rice(Oryza sativa L.)is one of the most important crops in the world.Since the completion of rice reference genome sequences,tremendous progress has been achieved in understanding the molecular mechanisms on various rice traits and dissecting the underlying regulatory networks.In this review,we summarize the research progress of rice biology over past decades,including omics,genome-wide association study,phytohormone action,nutrient use,biotic and abiotic responses,photoperiodic flowering,and reproductive development(fertility and sterility).For the roads ahead,cutting-edge technologies such as new genomics methods,high-throughput phenotyping platforms,precise genome-editing tools,environmental microbiome optimization,and synthetic methods will further extend our understanding of unsolved molecular biology questions in rice,and facilitate integrations of the knowledge for agricultural applications. | Rongzhi Chen Yiwen Deng Yanglin Ding Jingxin Guo Jie Qiu Bing Wang Changsheng Wang Yongyao Xie Zhihua Zhang Jiaxin Chen Letian Chen Chengcai Chu Guangcun He Zuhua He Xuehui Huang Yongzhong Xing Shuhua Yang Daoxin Xie Yaoguang Liu Jiayang Li | 2022 | Science China(Life Sciences)2022，65，1： | 12 |
| 6 | Multi-step formation, evolution, and functionalization of new cytoplasmic male sterility genes in the plant mitochondrial genomes显示文摘新基因起源是授与 phenotypic 变化和生物差异的 genomic 革新的主要来源。在植物的新 mitochondrial 基因的产生可以引起细胞质的男绝育(厘米) ,它能支持 outcrossing 和增加健康。然而, mitochondrial 基因怎么在结构和功能发源并且演变,仍然保持不清楚。米饭厘米的野未成功的类型被 mitochondrial 基因 WA352c (以前命名的 WA352 ) 授与并且广泛地在混合米饭繁殖被利用了。这里,我们重建由 11 mitochondrial genomic recombinant 的鉴定和分析的 WA352c 的进化轨道在野、栽培的米饭与 WA352c 有关组织。我们推断这些结构在野米饭 Oryza rufipogon,结合的 substoichiometric 变和顺序变化的 mitochondrial 染色体在保存 mitochondrial 序列之中通过多重重新整理产生了。我们鉴别二表示了,但是在这些结构之中的 nonfunctional protogenes,和他们能发展进功能的厘米基因经由的表演定序能减轻蛋白质的自我禁止的潜力的变化。这些顺序变化将资助蛋白质与编码原子核的 mitochondrial 蛋白质 COX11 交往的能力,在花药 tapetum 和男绝育导致早熟的规划房间死亡。而且,我们证明把 COX11 相互作用领域编码为这些 WA352c 相关的基因的序列经历了在进化期间净化选择。我们经由在结构,顺序,拷贝数字,和功能包含渐渐的变化的 multi-recombination/protogene formation/functionalization 机制为新厘米基因的形成和进化建议一个模型。 | Huiwu Tang Xingmei Zheng Chuliang Li Xianrong Xie Yuanling Chen Letian Chen Xiucai Zhao Huiqi Zheng Jiajian Zhou Shan Ye Jingxin Guo Yao-Guang Liu | 2017 | Cell Research2017，27，1： | 11 |
| 7 | Structural evolution of non dendritic AlSi7Mg alloy during reheating显示文摘The structural evolution of non dendritic AlSi7Mg alloy during reheating in resistance furnace was studied. The alloy ingots were produced by electromagnetic stirring during solidification. It was found that, the Si phase in eutectic dissolves in a way of diffusion toward α phase, its appearance changes from flake to dot like, and tends to be fine and spheroidal with increasing reheating temperature. The thinner the flake, the lower the temperature for the occurrence of this process, and the higher the transforming speed. The eutectic melts partially when Si phase dissolves to some extent, and the morphology and size of primary α phase begin to change. The dendrite and rosette α phases tends to sphericize. The size of the former becomes larger, while the size of the latter reduces to be 1/2~1/4 of the original size. The spheroidal primary α phase has a tendency of grain growth. | Zhang Kui(张奎) Zhang Yongzhong(张永忠) Liu Guojun(刘国均) Xu Jun(徐骏) Zhang Jingxin(张景新) Fan Jianzhong(樊建中) Shi Likai(石力开) | 1999 | 中国有色金属学会会刊:英文版1999，9，3： | 10 |
| 8 | Variation of carbon and nitrogen stoichiometry along a chronosequence of natural temperate forest in northeastern China显示文摘Aims Carbon(C)and nitrogen(N)stoichiometry contributes to under-standing elemental compositions and coupled biogeochemical cycles in ecosystems.However,we know little about the temporal patterns of C:N stoichiometry during forest development.The goal of this study is to explore the temporal patterns of intraspecific and ecosystem components’variations in C:N stoichiometry and the scaling relationships between C and N at different successional stages.Methods Along forest development in a natural temperate forest,northeastern China,four age gradients were categorized into ca.10-,30-,70-and 200-year old,respectively,and three 20 m×20 m plots were set up for each age class.Leaves,branches,fine roots and fresh litter of seven dominant species as well as mineral soil at depth of 0-10 cm were sampled.A Universal CHN Elemental Analyzer was used to determine the C and N concentrations in all samples.Important Findings Intraspecific leaf C,N and C:N ratios remained stable along forest development regardless of tree species;while C,N concentrations and C:N ratios changed significantly either in branches or in fine roots,and they varied with tree species except Populus davidiana(P<0.05).For ecosystem components,we discovered that leaf C:N ratios remained stable when stand age was below ca.70 years and dominant tree species were light-demanding pioneers such as Betula platyphylla and Populus davidiana,while increased signifi-cantly at the age of ca.200 years with Pinus koraiensis as the dom-inant species.C:N ratios in branches and fresh litter did not changed significantly along forest development stages.C concentrations scaled isometrically with respect to N concentrations in mineral soil but not in other ecosystem components.Our results indicate that,leaf has a higher intraspecific C:N stoichiometric stability compared to branch and fine root,whereas for ecosystem components,shifts in species composition mainly affect C:N ratios in leaves rather than other components.This study also demonstrated that C and N remain coupled in mineral soils but not in plant organs or fresh litter during forest development. | Xingyun Liang Shirong Liu Hui Wang Jingxin Wang | 2018 | Journal of Plant Ecology2018，11，3： | 9 |
| 9 | The genetic and molecular basis of cytoplasmic male sterility and fertility restoration in rice显示文摘Cytoplasmic male sterility (CMS) is a maternally inherited characteristic found in many (>150) plant species. CMS/restoration systems are useful tools for hybrid seed production, and are ideal models for study of the interactions between nuclear and mitochondrial genomes. CMS/restoration systems in rice have been widely used for hybrid seed production, greatly contributing to the food supply. This article reviews the progress of the studies on the genetic and molecular basis of cytoplasmic male sterility and fertility restoration in rice. | GUO JingXin LIU YaoGuang | 2009 | Chinese Science Bulletin2009，54，14： | 8 |
| 10 | Design Bistatic Interferometric DEM Generation Algorithm and Its Theoretical Accuracy Analysis for LuTan-1 Satellites显示文摘LuTan-1(LT-1)is a constellation with two full-polarization L-band radar satellites designed by China,and the first satellite was scheduled to be launched in December 2021 and the second one in January 2022.The LT-1 will be operated for deformation monitoring in repeat-pass mode,and for DEM generation in bistatic mode,improving self-sufficiency of SAR data for the field of geology,earthquake,disaster reduction,geomatics,forestry and so on.In this paper,we focused on designing an algorithm for interferometric DEM generation using LT-1 bistatic satellites.The basic principle,main error sources and errors control of the DEM generation algorithm of LT-1 were systematically analyzed.The experiment results demonstrated that:①The implemented algorithm had rigorous resolution with a theoretic accuracy better than 0.03 m for DEM generation.②The errors in satellite velocity and Doppler centroid had no obvious effect on DEM accuracy and they could be neglected.While the errors in position,baseline,slant range and interferometric phase had a significant effect on DEM accuracy.And the DEM error caused by baseline error was dominated,followed by the slant range error,interferometric phase error and satellite position error.③To obtain an expected DEM accuracy of 2 m,the baseline error must be strictly controlled and its accuracy shall be 1.0 mm or better for Cross-Track and Normal-Direction component,respectively.And the slant range error and interferometric phase error shall be reasonably controlled.The research results were of great significance for accurately grasping the accuracy of LT-1 data products and their errors control,and could provide a scientific auxiliary basis for LT-1 in promoting global SAR technology progress and the generation of high-precision basic geographic data. | Bing XU Liqun LIU Zhiwei LI Yan ZHU Jingxin HOU Wenxiang MAO | 2022 | Journal of Geodesy and Geoinformation Science2022，5，1： | 6 |
| 11 | Shortened snRNA promoters for efficient CRISPR/Cas-based multiplex genome editing in monocot plants显示文摘Dear Editor,CRISPR(clustered regularly interspaced short palindromic repeats)/Cas genome editing is a powerful tool for introducing specific mutations in organisms including plants.The system is composed of a nuclease such as Cas9 or Cas12a and an engineered single-guide RNA(sgRNA)incorporating a target sequence(Li et al.,2019).A Cas9/sgRNA complex recognizes its target site in the genome,resulting in a mutation at that site. | Yu Hao Wubei Zong Dongchang Zeng Jingluan Han Shuifu Chen Jianian Tang Zhe Zhao Xiaojuan Li Kun Ma Xianrong Xie Qinlong Zhu Yuanling Chen Xiucai Zhao Jingxin Guo Yao-Guang Liu | 2020 | Science China(Life Sciences)2020，63，6： | 4 |
| 12 | Cell adhesive spectra along surface wettability gradient from superhydrophilicity to superhydrophobicity显示文摘Surface wettability is important to design biointerfaces and functional biomaterials in various biological applications. However,to date, it remains some confusions about how cells would response to the surfaces with different wettabilities. Herein,we systematically explore the adhesive spectra of cells to the surface with wettability gradient from superhydrophilicity to superhydrophobicity, clarifying the effect of wettability on cell adhesion. We envision that this study may provide valuable information for the design of biomedical implants with controllable cell adhesion, such as neural interface devices and flexible implant. | Jingxin Meng Gao Yang Lu Liu Yongyang Song Lei Jiang Shutao Wang | 2017 | Science China Chemistry2017，60，5： | 4 |
| 13 | Hd1,Ghd7,and DTH8 synergistically determine the rice heading date and yield-related agronomic traits显示文摘Heading date determines the seasonal and regional adaptation of rice(Oryza sativa L.)varieties and is mainly controlled by photoperiod sensitivity(PS).The core heading date genes Hd1,Ghd7,DTH8,and PRR37 act synergistically in regulating the PS.In this study,we systematically analyze the heading date,PS,and agronomic traits of eight homozygous lines with various combinations of Hd1,Ghd7,and DTH8 alleles in the prr37 background under long-day(LD)and short-day(SD)conditions,respectively.We find that Hd1 alone promotes heading,regardless of the day length.However,under LDs,Hd1 suppresses flowering,in coordination with functional Ghd7 or with Ghd7 and DTH8.These loci cooperate to negatively regulate the Ehd1-Hd3 a/RFT1 pathway and delay heading.Under SDs,Hd1 competes with various heading suppressors to promote heading.Therefore,the dual function of Hd1 is vital for PS.The lines carrying Hd1 alone show reduced plant height with fewer primary and secondary branches in panicles.Lines carrying Ghd7 and DTH8(with hd1)show delayed heading and improve agronomic traits.Overall,our results reveal the regulation of rice PS flowering by the core heading date genes and their effects on agronomic traits,providing valuable information for the selection of rice varieties for adaptation to different light and temperature conditions. | Kangli Sun Minghui Huang Wubei Zong Dongdong Xiao Chen Lei Yanqiu Luo Yingang Song Shengting Li Yu Hao Wanni Luo Bingqun Xu Xiaotong Guo Guangliang Wei Letian Chen Yao-Guang Liu Jingxin Guo | 2022 | Journal of Genetics and Genomics2022，49，5： | 4 |
| 14 | Characteristics of typhoon disturbed gaps in an old-growth tropical montane rainforest in Hainan Island, China显示文摘Disturbances that create gaps can shape the structure and function of forests. However, such disturbance regimes in Asian tropical montane rainforests remain largely unquantified. Least studied are typhoon disturbances that are attributable to climate change. We investigated gap characteristics in terms of size, age, and gapmaker to quantify the gap disturbance regimes in an intact old-growth tropical montane rainforest on Hainan Island,China. The intensity of typhoons has increased since 1949,and typhoon winds blow mostly(45.5%) from the northeast corner of Hainan Island, resulting in a higher frequency of gaps in the northeast. A total of 221 gap-makers(trees that fell to create canopy gaps) and 53 gaps were observed in a 3.16 ha old-growth rainforest. Most canopy gaps(85%)were <200 m^2. The average size of canopy gaps was smaller in the rainforest than in other tropical forests, while the average size of expanded gaps was similar to those in other tropical forests. The maximum age of gaps was 23.5 years indicating that gaps had more rapid turnover than other parts of tropical forests. The frequency distribution of gap-makers followed a lognormal distribution with a distinctive peak at three gap-makers, which was different from the inverse J-shaped curve typical of other tropical forests. Gaps were recorded mainly on slopes between 20° and 35° and wood density of gap-makers was between 0.6 and 0.7 g cm^(-3). Our results suggest that small-scale disturbance was the dominant agent of gap formation in this old-growth rainforest that is subject to increasing typhoon disturbances. | Huai Yang Shirong Liu Kunfang Cao Jingxin Wang Yide Li Han Xu | 2017 | Journal of Forestry Research2017，28，6： | 3 |
| 15 | Roles of biotic and abiotic variables in determining spatial variation of soil respiration in secondary oak and planted pine forests显示文摘 | Junwei Luan Shirong Liu Xueling Zhu Jingxin Wang Kuan Liu | 2011 | Soil Biology and Biochemistry2011，，1： | 2 |
| 16 | Thermal conductivity and bending strength of SiC composites reinforced by pitch-based carbon fibers显示文摘In this work,pitch-based carbon fibers were utilized to reinforce silicon carbide(SiC)composites via reaction melting infiltration(RMI)method by controlling the reaction temperature and resin carbon content.Thermal conductivities and bending strengths of composites obtained under different preparation conditions were characterized by various analytical methods.Results showed the formation of SiC whiskers(SiC_(w))during RMI process according to vapor–solid(VS)mechanism.SiC_(w) played an important role in toughening the C_(pf)/SiC composites due to crack bridging,crack deflection,and SiC_(w) pull-out.Increase in reaction temperature during RMI process led to an initial increase in thermal conductivity along in-plane and thickness directions of composites,followed by a decline.At reaction temperature of 1600℃,thermal conductivities along the in-plane and thickness directions were estimated to be 203.00 and 39.59 W/(m×K),respectively.Under these conditions,bending strength was recorded as 186.15±3.95 MPa.Increase in resin carbon content before RMI process led to the generation of more SiC matrix.Thermal conductivities along in-plane and thickness directions remained stable with desirable values of 175.79 and 38.86 W/(m×K),respectively.By comparison,optimal bending strength improved to 244.62±3.07 MPa.In sum,these findings look promising for future application of pitch-based carbon fibers for reinforcement of SiC ceramic composites. | Liyang CAO Yongsheng LIU Yunhai ZHANG Yejie CAO Jingxin LI Jie CHEN Lu ZHANG Zheng QI | 2022 | Journal of Advanced Ceramics2022，11，2： | 2 |
| 17 | Soil carbon dynamics in a Pinus massoniana plantation following clear-cutting and slash removal显示文摘Aims Slash removal is a common practice to prepare recently harvested sites for replanting.However,little is known about its impact on soil carbon(C)dynamics in subtropical plantations.This study evaluates the effects of burning versus manual slash removal site preparation treatments on soil organic carbon(SOC),soil respiration and soil microbial community structure in a Pinus massoniana plantation in southern China.Methods Three areas within a mature P.massoniana plantation were clearcut.Two months following harvesting,slash on one-half of each area was burned(BURN),whereas slash was manually removed(MANR)on the other portion.Slash removal treatments were also compared with adjacent uncut plantation areas(UNCUT).Soil samples,and soil respiration measurements were used to characterize soil properties and microbial communities following slash removal treatments.Important Findings Mean soil respiration rates from the MANR and BURN treatments were 26%and 17%lower,respectively,than the UNCUT treatment over 1 year.The MANR and BURN treatment resulted in soils with 27%and 9%reduction in total phospholipid fatty acids(PLFAs)and 18%and 10%reduction in bacterial PLFAs,respectively,compared with the UNCUT treatment.However,no significant differences existed between slash removal treatments with respect to soil chemical properties,SOC chemical compositions,soil respiration and microbial communities;although PLFA patterns were notably different for the burned plots.Most factors affecting C dynamics and microbial communities were not sensitive to the differences imparted to the ecosystem due to manual slash removal or burning.Our results suggested that low-intensity burning after clear-cutting might have no significant effect on soil C pool and its dynamics compared with manual slash removal in subtropical plantations. | Yuan Wen Jamie LSchuler Shirong Liu Pu Mou Hui Wang Haolong Yu Jingxin Wang | 2016 | Journal of Plant Ecology2016，9，1： | 2 |
| 18 | Long non-coding RNAs play an important role in regulating photoperiod-and temperature-sensitive male sterility in rice显示文摘Rice(Oryza sativa L.)is a major food crop for more than half of the world’s population.Therefore,increasing rice production is of great importance.The successful development of hybrid rice in the 1970s was an important achievement for increasing yield potential,since hybrid rice varieties produce higher yields than inbred varieties(Cheng et al.,2007).In plants,male sterility refers to the inability of producing dehiscent anthers and functional pollen(Chen and Liu,2014). | Jingxin Guo Yao-Guang Liu | 2017 | Science China(Life Sciences)2017，60，4： | 2 |
| 19 | Effects of rainfall on soil moisture and water movement in a subalpine dark coniferous forest in southwestern China显示文摘 | Qing Xu Shirong Liu Xianchong Wan Chunqian Jiang Xianfang Song Jingxin Wang | 2012 | Hydrol. Process2012，，25： | 1 |
| 20 | Medical X-ray Coherent Scatter Images Processing based on the MRF Model显示文摘 | Liu taihui Sun junxi Liu jingxin | 2006 | Proc of SPIE2006，6026，： | 1 |
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