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| 1 | A high-quality Actinidia chinensis(kiwifruit)genome显示文摘Actinidia chinensis(kiwifruit)is a perennial horticultural crop species of the Actinidiaceae family with high nutritional and economic value.Two versions of the A.chinensis genomes have been previously assembled,based mainly on relatively short reads.Here,we report an improved chromosome-level reference genome of A.chinensis(v3.0),based mainly on PacBio long reads and Hi-C data.The high-quality assembled genome is 653 Mb long,with 0.76%heterozygosity.At least 43%of the genome consists of repetitive sequences,and the most abundant long terminal repeats were further identified and account for 23.38%of our novel genome.It has clear improvements in contiguity,accuracy,and gene annotation over the two previous versions and contains 40,464 annotated protein-coding genes,of which 94.41%are functionally annotated.Moreover,further analyses of genetic collinearity revealed that the kiwifruit genome has undergone two whole-genome duplications:one affecting all Ericales families near the K-T extinction event and a recent genus-specific duplication.The reference genome presented here will be highly useful for further molecular elucidation of diverse traits and for the breeding of this horticultural crop,as well as evolutionary studies with related taxa. | Haolin Wu Tao Ma Minghui Kang Fandi Ai Junlin Zhang Guanyong Dong Jianquan Liu | 2019 | Horticulture Research2019，6，1： | 10 |
| 2 | A chromosome-scale genome assembly of Isatis indigotica,an important medicinal plant used in traditional Chinese medicine显示文摘Isatis indigotica(2n=14)is an important medicinal plant in China.Its dried leaves and roots(called Isatidis Folium and Isatidis Radix,respectively)are broadly used in traditional Chinese medicine for curing diseases caused by bacteria and viruses such as influenza and viral pneumonia.Various classes of compounds isolated from this species have been identified as effective ingredients.Previous studies based on transcriptomes revealed only a few candidate genes for the biosynthesis of these active compounds in this medicinal plant.Here,we report a high-quality chromosome-scale genome assembly of I.indigotica with a total size of 293.88 Mb and scaffold N50=36.16 Mb using single-molecule real-time long reads and high-throughput chromosome conformation capture techniques.We annotated 30,323 highconfidence protein-coding genes.Based on homolog searching and functional annotations,we identified many candidate genes involved in the biosynthesis of main active components such as indoles,terpenoids,and phenylpropanoids.In addition,we found that some key enzyme-coding gene families related to the biosynthesis of these components were expanded due to tandem duplications,which likely drove the production of these major active compounds and explained why I.indigotica has excellent antibacterial and antiviral activities.Our results highlighted the importance of genome sequencing in identifying candidate genes for metabolite synthesis in medicinal plants. | Minghui Kang Haolin Wu Qiao Yang Li Huang Quanjun Hu Tao Ma Zaiyun Li Jianquan Liu | 2020 | Horticulture Research2020，7，1： | 9 |
| 3 | On the Unusual Holocene Carbonate Sediment in Lake Nam Co,Central Tibet显示文摘In lacustrine sediments,aragonite is a widespread mineral,whereas monohydrocalcite is a rare carbonate mineral. In the cold and high-attitude Xizang (Tibetan) Plateau,where aragonite has been commonly found in lacustrine sediments,there is no aragonite,but low-Mg calcite,monohydrocalcite and trace dolomite. The lake receives solutes primarily from surface runoffs and remains fairly constant water chemistry for a long time. The total CaCO3 percentage in sediments could be controlled by evaporation and inflow of detrital materials. The absence of aragonite is unusual when compared to other lacustrine sediments from the Tibetan Plateau. This could be due to low Ca/Mg ratio,low salinity,low Mg and Ca concentration. Monohydrocalcite might precipitate from the lake water mediated by biological activities. Low-Mg calcite originated from minor ostracoda shell and the precipitation of lake water with biological activities. | LI Minghui KANG Shichang ZHU Liping WANG Feiyue WANG Junbo YI Chaolu FANG Xiaomin XIE Manping | 2009 | Journal of Mountain Science2009，6，4： | 3 |
| 4 | Toward an Ecological Civilization:China’s Progress as Documented by the Second National General Survey of Pollution Sources显示文摘The relationship between environmental quality and economic growth has been a hot topic for decades.After years of rapid industrialization and urbanization,China’s environmental challenges are approaching a turning point.Following the principles of ecological civilization construction,China is on its way to maintaining high-quality and green economic development.On 10 June 2020,the Chinese Government reported the key findings of the Second National General Survey of Pollution Sources(fiscal year 2017),which provides strong quantitative evidence of progress toward ecological civilization.In terms of our comparison between the two National General Surveys in 2007 and 2017,it was found that environmental pollution,measured in terms of many wastewater and air emission pollutant discharges,is decreasing despite the steady growth in economic activities—and at a noticeably fast pace.Other national and local governments can adopt some of China’s ecological civilization practices,within their own individual contexts. | Minghui Xie Huabo Duan Peng Kang Qi Qiao Lu Bai | 2021 | Engineering2021，7，9： | 2 |
| 5 | Pervasive hybridization during evolutionary radiation of Rhododendron subgenus Hymenanthes in mountains of southwest China显示文摘Radiations are especially important for generating species biodiversity in mountainous ecosystems.The contribution of hybridization to such radiations has rarely been examined.Here,we use extensive genomic data to test whether hybridization was involved in evolutionary radiation within Rhododendron subgenus Hymenanthes,whose members show strong geographic isolation in the mountains of southwest China.We sequenced genomes for 143 species of this subgenus and 93 species of four other subgenera,and found that Hymenanthes was monophyletic and radiated during the late Oligocene to middle Miocene.Widespread hybridization events were inferred within and between the identified clades and subclades.This suggests that hybridization occurred both early and late during diversification of subgenus Hymenan thes,although the extent to which hybridization,speciation through mixing-isolation-mixing or hybrid speciation,accelerated the diversification needs further exploration.Cycles of isolation and contact in such and other montane ecosystems may have together promoted species radiation through hybridization between diverging populations and species.Similar radiation processes may apply to other montane floras in this region and elsewhere. | Yazhen Ma Xingxing Mao Ji Wang Lei Zhang Yuanzhong Jiang Yuying Geng Tao Ma Liming Cai Shuangquan Huang Pete Hollingsworth Kangshan Mao Minghui Kang Yiling Li Wenlu Yang Haolin Wu Yang Chen Charles C.Davis Nawal Shrestha Richard H.Ree Zhenxiang Xi Quanjun Hu Richard I.Milne Jianquan Liu | 2022 | National Science Review2022，9，12： | 1 |
| 6 | Characterization of a chromosomal toxin–antitoxin, Rv1102c–Rv1103c system in Mycobacterium tuberculosis显示文摘 | Jeong-Sun Han Jae Jin Lee Tripti Anandan Minghui Zeng Srinivas Sripathi Wan Jin Jahng Sang Hee Lee Joo-Won Suh Choong-Min Kang | 2010 | Biochemical and Biophysical Research Communications2010，，3： | 1 |
| 7 | Analysis on Uranium Mineralization Potential of Late Yanshanian Granites in Sichuan of Sanjiang Area显示文摘The Sanjiang area is an important granite distribution area in China,except for South China,in which granites is complex and complete.Based on fully collecting date about it,this paper explores the significance of | YIN Minghui XU Zhengqi Zhou Ting SUN Kang | 2017 | Acta Geologica Sinica(English Edition)2017，91，S1： | 1 |
| 8 | Enlarged fins of Tibetan catfish provide new evidence of adaptation to high plateau显示文摘The uplift of the Tibetan Plateau significantly altered the geomorphology and climate of the Euroasia by creating large mountains and rivers.Fishes are more likely to be affected relative to other organisms,as they are largely restricted to river systems.Faced with the rapidly flowing water in the Tibetan Plateau,a group of catfish has evolved greatly enlarged pectoral fins with more numbers of fin-rays to form an adhesive apparatus.However,the genetic basis of these adaptations in Tibetan catfishes remains elusive.In this study,we performed comparative genomic analyses based on the chromosome-level genome of Glyptosternum maculatum in family Sisoridae and detected some proteins with conspicuously high evolutionary rates in particular in genes involved in skeleton development,energy metabolism,and hypoxia response.We found that the hoxd12a gene evolved faster and a loss-of-function assay of hoxd12a supports a potential role for this gene in shaping the enlarged fins of these Tibetan catfishes.Other genes with amino acid replacements and signatures of positive selection included proteins involved in low temperature(TRMU)and hypoxia(VHL)responses.Functional assays reveal that the G.maculatum TRMU allele generates more mitochondrial ATP than the ancestral allele found in low-altitude fishes.Functional assays of VHL alleles suggest that the G.maculatum allele has lower transactivation activity than the low-altitude forms.These findings provide a window into the genomic underpinnings of physiological adaptations that permit G.maculatum to survive in the harsh environment of the Tibetan Himalayas that mirror those that are convergently found in other vertebrates such as humans. | Liandong Yang Ning Sun Honghui Zeng Ying Wang Wenjun Chen Zufa Ding Yang Liu Jing Wang Minghui Meng Yanjun Shen Jingliang Kang Xiuhui Ma Wenqi Lv Juan Chen Axel Meyer Baocheng Guo Shunping He | 2023 | Science China(Life Sciences)2023，66，7： | 0 |
| 9 | Polarization-space joint mainlobe jamming countermeasure technique based on divided dimensions显示文摘In order to solve the problem that the traditional space jamming countermeasure cannot deal with the mainlobe self-protecting jammings,a polarization-space joint mainlobe jamming countermeasure technique based on divided dimensions is proposed.Specifically,the digital beam of each row and column is firstly formed by using dual polarization digital receiving in multi-channel.Then,the polarization-space joint cancellation in both azimuth and elevation dimensions is carried out based on the polarization-space joint difference between the target echo and the jamming,as well as the divided dimension feature of the row and column beams.Finally,the sum and difference beams of the full array in the elevation or azimuth dimension are formed by the beams after jamming cancelling,and the monopulse angle measurement is further employed to obtain target angles.The effectiveness of the proposed technique is verified by simulations,indicating that the self-protecting jamming and multiple mainlobe following jammings can be both cancelled simultaneously with the angle measurement unchanged. | SHA Minghui MAO Erke ZHANG Kang | 2022 | Journal of Systems Engineering and Electronics2022，33，3： | 0 |
| 10 | Geochemical Characteristics and Uranium Mineralization Potential of The Yanshanian Granite in The West of Yunnan Province显示文摘1 Introduction The Sanjiang metallogenic belt is one of the important nonferrous metal metallogenic belts in China,the potential resources of copper,lead,zinc,silver,gold and tin are huge(Zhengqian et al.,1993).In the west of Yunnan province has a lot of Yanshanian granite,according to 1:20 million test data,development of granite belt rich in radioactive minerals in the west of | SUN Kang XU Zhengqi YIN Minghui | 2017 | Acta Geologica Sinica(English Edition)2017，91，S1： | 0 |
| 11 | Special issue on the 100^(th) anniversary of Xiamen University显示文摘This special issue is devoted to the celebration of the century anniversary of Xiamen University(XMU)(6 April 2021)and the establishment of the LSA Editorial Office in Xiamen(3 July 2021),a collection to highlight the recent exciting research works performed in XMU or by XMU alumni,from all aspects of optics and photonics,including basic,applied and engineering research and applications.The guest editors are three XMU alumni who are active researchers in these areas:Professor Minghui Hong from National University of Singapore,Professor Zhongqun Tian and Professor Junyong Kang from XMU. | Junyong Kang Minghui Hong Zhongqun Tian | 2021 | Light(Science & Applications)2021，10，10： | 0 |
| 12 | Cryptic divergences and repeated hybridizations within the endangered “living fossil” dove tree(Davidia involucrata) revealed by whole genome resequencing显示文摘The identification and understanding of cryptic intraspecific evolutionary units(lineages) are crucial for planning effective conservation strategies aimed at preserving genetic diversity in endangered species.However, the factors driving the evolution and maintenance of these intraspecific lineages in most endangered species remain poorly understood. In this study, we conducted resequencing of 77 individuals from 22 natural populations of Davidia involucrata, a “living fossil” dove tree endemic to central and southwest China. Our analysis revealed the presence of three distinct local lineages within this endangered species, which emerged approximately 3.09 and 0.32 million years ago. These divergence events align well with the geographic and climatic oscillations that occurred across the distributional range.Additionally, we observed frequent hybridization events between the three lineages, resulting in the formation of hybrid populations in their adjacent as well as disjunct regions. These hybridizations likely arose from climate-driven population expansion and/or long-distance gene flow. Furthermore, we identified numerous environment-correlated gene variants across the total and many other genes that exhibited signals of positive evolution during the maintenance of two major local lineages. Our findings shed light on the highly dynamic evolution underlying the remarkably similar phenotype of this endangered species. Importantly, these results not only provide guidance for the development of conservation plans but also enhance our understanding of evolutionary past for this and other endangered species with similar histories. | Yumeng Ren Lushui Zhang Xuchen Yang Hao Lin Yupeng Sang Landi Feng Jianquan Liu Minghui Kang | 2024 | Plant Diversity2024，46，2： | 0 |
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