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| 1 | A Chromosome-Scale Genome Assembly of Paper Mulberry(Bmussonetia papyrifera)Provides New Insights into Its Forage and Papermaking Usage显示文摘Paper mulberry(Broussonetia papyrifera)is a well-known woody tree historically used for Cai Lun papermaking,one of the four great inventions of ancient China.More recently,Paper mulberry has also been used as forage to address the shortage of feedstuff because of its digestible crude fiber and high protein contents.In this study,we obtained a chromosome-scale genome assembly for Paper mulberry using integrated approaches,including Illumina and PacBio sequencing platform as well as Hi-C,optical,and genetic maps.The assembled Paper mulberry genome consists of 386.83 Mb,which is close to the estimated size,and 99.25%(383.93 Mb)of the assembly was assigned to 13 pseudochromosomes.Comparative genomic analysis revealed the expansion and contraction in the flavonoid and lignin biosynthetic gene families,respectively,accounting for the enhanced flavonoid and decreased lignin biosynthesis in Paper mulberry.Moreover,the increased ratio of syringyl-lignin to guaiacyl-lignin in Paper mulberry underscores its suitability for use in medicine,forage,papermaking,and barkcloth making.We also identified the rootassociated microbiota of Paper mulberry and found that Pseudomonas and Rhizobia were enriched in its roots and may provide the source of nitrogen for its stems and leaves via symbiotic nitrogen fixation.Collectively,these results suggest that Paper mulberry might have undergone adaptive evolution and recruited nitrogen-fixing microbes to promote growth by enhancing flavonoid production and altering lignin monomer composition.Our study provides significant insights into genetic basis of the usefulness of Paper mulberry in papermaking and barkcloth making,and as forage.These insights will facilitate further domestication and selection as well as industrial utilization of Paper mulberry worldwide. | Xianjun Peng Hui Liu Peilin Chen Feng Tang Yanmin Hu Fenfen Wang Zhi Pi Meiling Zhao Naizhi Chen Hui Chen Xiaokang Zhang Xueqing Yan Min Liu Xiaojun Fu Guofeng Zhao Pu Yao Lili Wang He Dai Xuming Li Wei Xiong Wencai Xu Hongkun Zheng Haiyan Yu Shihua Shen | 2019 | Molecular Plant2019，12，5： | 18 |
| 2 | Triage for management of cervical high-grade squamous intraepithelial lesion patients with positive margin by conization: a retrospective analysis显示文摘这研究的目的是为颈的高级有鳞的 intraepithelial 的管理指导 triage 有由 conization 的积极边缘的损害(HSIL ) 病人。有由 conization 的积极边缘的 HSIL 病人的 Clinico 病理学的数据回顾地从 2009 年 1 月被收集到 2014 年 12 月。所有病人在 6 个月以内经历了第二等的 conization 或子宫切除。剩余损害的率被计算,并且与剩余损害联系的因素被 univariate 和 multivariate 分析分析。在 119 个病人的一个总数之中, 56 (47.06%) 病人们在他们的随后的外科的标本介绍了剩余 HSIL,包括侵略的颈的癌(3 阶段 IA1 和 1 个阶段 IA2 病人) 的 4 个盒子。Univariate 分析显示出那耐心的年龄 > 35 年(P=0.005 ) , menopausal 时期 > 5 年(P=0.0035 ) ,和多重象限的参与(P=0.001 ) 显著地与剩余疾病被相关;然而, multivariate 分析揭示了那多重象限的参与(P=0.001;或, 3.701;95%CI, 1.4969.154 ) 是为剩余疾病的一个独立风险因素。将近有由 conization 的积极边缘的 HSIL 病人的一半与多重积极边缘在随后的外科的标本,和那些是没有疾病的可以考虑 re-conization 或重新评价。 | Yuya Dou Xiaodan Zhang Yang Li Fenfen Wang Xing Xie Xinyu Wang | 2017 | Frontiers of Medicine2017，11，2： | 12 |
| 3 | Deformation geometry and timing of the Wupoer thrust belt in the NE Pamir and its tectonic implications显示文摘 | Xiaogan CHENG Hanlin CHEN Xiubin LIN Shufeng YANG Shenqiang CHEN Fenfen ZHANG Kang LI Zelin LIU | 2016 | Frontiers of Earth Science2016，10，4： | 6 |
| 4 | Association between 15 known or potential breast cancer susceptibility genes and breast cancer risks in Chinese women显示文摘Objective:There are many hereditary breast cancer patients in China,and multigene panel testing has been a new paradigm of genetic testing for these patients and their relatives.However,the magnitude of breast cancer risks related to multiple breast cancer susceptibility genes are largely unknown in Chinese women.Methods:We screened pathogenic variants in 15 established or potential breast cancer susceptibility genes from 8,067 consecutive Chinese female breast cancer patients and 13,129 Chinese cancer-free female controls.These breast cancer patients were unselected for age at diagnosis or family history.Results:We found that pathogenic variants in TP53[odds ratio(OR):16.9,95%confidence interval(CI):5.2–55.2];BRCA2(OR:10.4,95%CI:7.6–14.2);BRCA1(OR:9.7,95%CI:6.3–14.8);and PALB2(OR:5.2,95%CI:3.0–8.8)were associated with a high risk of breast cancer.ATM,BARD1,CHEK2,and RAD51D were associated with a moderate risk of breast cancer with ORs ranging from 2-fold to 4-fold.In contrast,pathogenic variants of NBN,RAD50,BRIP1,and RAD51C were not associated with increased risk of breast cancer in Chinese women.The pathogenic variants of PTEN,CDH1,and STK11 were very rare,so they had a limited contribution to Chinese breast cancer.Patients with pathogenic variants of TP53,BRCA1,BRCA2,and PALB2 more often had earlyonset breast cancer,bilateral breast cancer,and a family history of breast cancer and/or any cancer.Conclusions:This study provided breast cancer risk assessment data for multiple genes in Chinese women,which is useful for genetic testing and clinical management of Chinese hereditary breast cancer. | Fenfen Fu Dongjie Zhang Li Hu Senthil Sundaram Dingge Ying Ying Zhang Shuna Fu Juan Zhang Lu Yao Ye Xu Yuntao Xie | 2022 | Cancer Biology & Medicine2022，19，2： | 3 |
| 5 | Synergetic PM_(2.5) and O_(3) control strategy for the Yangtze River Delta,China显示文摘PM_(2.5)concentrations have dramatically reduced in key regions of China during the period 2013-2017,while O_(3)has increased.Hence there is an urgent demand to develop a synergetic regional PM_(2.5)and O_(3)control strategy.This study develops an emission-to-concentration response surface model and proposes a synergetic pathway for PM_(2.5)and O_(3)control in the Yangtze River Delta(YRD)based on the framework of the Air Benefit and Cost and Attainment Assessment System(ABaCAS).Results suggest that the regional emissions of NOx,SO_(2),NH3,VOCs(volatile organic compounds)and primary PM_(2.5)should be reduced by 18%,23%,14%,17%and 33%compared with 2017 to achieve 25%and 5% decreases of PM_(2.5)and O_(3)in 2025,and that the emission reduction ratios will need to be 50%,26%,28%,28% and 55%to attain the National Ambient Air Quality Standard.To effectively reduce the O_(3) pollution in the central and eastern YRD,VOCs controls need to be strengthened to reduce O_(3)by 5%,and then NOx reduction should be accelerated for air quality attainment.Meanwhile,control of primary PM_(2.5)emissions shall be prioritized to address the severe PM_(2.5)pollution in the northern YRD.For most cities in the YRD,the VOCs emission reduction ratio should be higher than that for NOx in Spring and Autumn.NOx control should be increased in summer rather than winter when a strong VOC-limited regime occurs.Besides,regarding the emission control of industrial processes,on-road vehicle and residential sources shall be prioritized and the joint control area should be enlarged to include Shandong,Jiangxi and Hubei Province for effective O_(3)control. | Zhaoxin Dong Jia Xing Fenfen Zhang Shuxiao Wang Dian Ding Hongli Wang Cheng Huang Haotian Zheng Yueqi Jiang Jiming Hao | 2023 | Journal of Environmental Sciences2023，，1： | 3 |
| 6 | Biodiversity ofyeasts, lactic acid bacteria and acetic acid bacteria in the fermentationof “Shanxi aged vinegar”,a traditional Chinese vinegar显示文摘 | WU Jiajia MA Yingkun ZHANG Fenfen | 2012 | FoodMicrobiology2012，30，1： | 1 |
| 7 | Prevalence of Dyslipidemia and Associated Factors Among the Hypertensive Rural Chinese Population显示文摘 | Xingang Zhang Zhaoqing Sun Liqiang Zheng Jue Li Shuangshuang Liu Changlu Xu Jiajin Li Fenfen Zhao Dayi Hu Yingxian Sun | 2007 | Archives of Medical Research2007，，4： | 1 |
| 8 | Equidistant combination wavelength screening and step-by-step phase-out method for the near-infrared spectroscopic analysis of serum urea nitrogen显示文摘We applied near-infrared(NIR)spectroscopy with chemometrics for the rapid and reagent-fee analysis of serum urea nitrogen(SUN).The modeling is based on the average effect of multiple sample partitions to achieve parameter selection with stability.A multiparameter optimization platform with Norris derivative filter-partial least squares(Norris-PLS)was developed to select the most suitable mode(d=2,s=33,g=15).Using equidistant combination PLS(EC-PLS)with four parameters(initial wavelength I,number of wavelengths N,number of wavelength gaps G and latent variables LV),we performed wavelength screening after eliminating high-absorption wavebands.The optimal EC-PLS parameters were I=1228 nm,N=26,G=16 and LV=12.The root-mean square error(SEP),correlation coefficient(R_(p))for prediction and ratio of performance-to-deviation(RPD)for validation were 1.03 mmol L^(-1),0.992 and 7.6,respectively.We proposed the wavelength step-by-step phase-out PLS(WSP-PLS)to remove redun-dant wavelengths in the top 100 EC-PLS models with improved prediction performance.The combination of 19 wavelengths was identifed as the optimal model for SUN.The SEP,Rp and RPD in validation were 1.01 mmol L^(-1),0.992 and 7.7,respectively.The prediction effect and wavelength complexity were better than those of EC-PIS.Our results showed that NIR spectroscopy combined with the EC-PLS and WSP-PLS methods enabled the high-precision analysis ofSUN.WSP-PLS is a secondary optimization method that can further optimize any wavelength moc odel obtained through other continuous or discrete strategies to establish a simple and better model. | Yihui Yang Fenfen Lei Jing Zhang Lijun Yao Jiemei Chen Tao Pan | 2019 | Journal of Innovative Optical Health Sciences2019，，6： | 1 |
| 9 | Differential SW16.1 allelic effects and genetic backgrounds contributed to increased seed weight after soybean domestication显示文摘Although seed weight has increased following domestication from wild soybean(Glycine soja) to cultivated soybean(Glycine max), the genetic basis underlying this change is unclear. Using mapping populations derived from chromosome segment substitution lines of wild soybean, we identified SW16.1 as the causative gene underlying a major quantitative trait locus controlling seed weight.SW16.1 encodes a nucleus-localized LIM domaincontaining protein. Importantly, the GsSW16.1 allele from wild soybean accession N24852 had a negative effect on seed weight, whereas the GmSW16.1 allele from cultivar NN1138-2 had a positive effect. Gene expression network analysis,reverse-transcription quantitative polymerase chain reaction, and promoter-luciferase reporter transient expression assays suggested that SW16.1 regulates the transcription of MT4, a positive regulator of seed weight. The natural variations in SW16.1 and other known seed weight genes were analyzed in soybean germplasm. The SW16.1 polymorphism was associated with seed weight in 247 soybean accessions, showing much higher frequency of positive-effect alleles in cultivated soybean than in wild soybean. Interestingly,gene allele matrix analysis of the known seed weight genes revealed that G. max has lost 38.5%of the G. soja alleles and that most of the lost alleles had negative effects on seed weight. Our results suggest that eliminating negative alleles from G. soja led to a higher frequency of positive alleles and changed genetic backgrounds in G. max,which contributed to larger seeds in cultivated soybean after domestication from wild soybean.Our findings provide new insights regarding soybean domestication and should assist current soybean breeding programs. | Xianlian Chen Cheng Liu Pengfei Guo Xiaoshuai Hao Yongpeng Pan Kai Zhang Wusheng Liu Lizhi Zhao Wei Luo Jianbo He Yanzhu Su Ting Jin Fenfen Jiang Si Wang Fangdong Liu Rongzhou Xie Changgen Zhen Wei Han Guangnan Xing Wubin Wang Shancen Zhao Yan Li Junyi Gai | 2023 | Journal of Integrative Plant Biology2023，65，7： | 1 |
| 10 | ZnS Quantum Dots Derived a Reagentless Uric Acid Biosensor显示文摘 | Zhang Fenfen Lia Chenxin Lia Xiaohua | 2006 | Talanta2006，68，4： | 1 |
| 11 | Dual-Functional Organotelluride Additive for Highly Efficient Sulfur Redox Kinetics and Lithium Regulation in Lithium–Sulfur Batteries显示文摘High energy density and low cost made lithium–sulfur(Li–S)batteries appealing for the next-generation energy storage devices.However,their commercial viability is seriously challenged by serious polysulfide shuttle effect,sluggish sulfur kinetics,and uncontrollable dendritic Li growth.Herein,a dual-functional electrolyte additive,diphenyl ditelluride(DPDTe)is reported for Li–S battery.For sulfur cathodes,DPDTe works as a redox mediator to accelerate redox kinetics of sulfur,in which Te radical-mediated catalytic cycle at the solid–liquid interface contributes significantly to the whole process.For lithium anodes,DPDTe can react with lithium metal to form a smooth and stable organic–inorganic hybrid solid-electrolyte interphase(SEI),enabling homogeneous lithium deposition for suppressing dendrite growth.Consequently,the Li–S battery with DPDTe exhibits remarkable cycling stability and superb rate capability,with a high capacity up to 1227.3 mAh g^(-1)and stable cycling over 300 cycles.Moreover,a Li–S pouch cell with DPDTe is evaluated as the proof of concept.This work demonstrates that organotelluride compounds can be used as functional electrolyte additives and offers new insights and opportunities for practical Li–S batteries. | Wei Zhang Fenfen Ma Qiang Wu Ziqi Zeng Wei Zhong Shijie Cheng Xin Chen Jia Xie | 2023 | Energy & Environmental Materials2023，6，3： | 1 |
| 12 | Astrocyte elevated gene‐1 interacts with β‐catenin and increases migration and invasion of colorectal carcinoma显示文摘 | Fenfen Zhang Qingxu Yang Fengjiao Meng Huijuan Shi Hui Li Yingjie Liang Anjia Han | 2013 | Carcinog2013，，8： | 1 |
| 13 | Research on load distribution effect of load distributed structure in the complex rotational and translational engineering 显示文摘 | Erjun Wu Zhaona Cao Fenfen Zhang | 2013 | Advanced Materials Research2013，，671674： | 1 |
| 14 | Biodiversity of yeasts, lactic acid bacteria and acetic acid bacteria in the fermentation of Shanxi aged vinegar, a traditional Chinese vinegar 显示文摘 | Jiajia Wu Yingkun Ma Fenfen Zhang | 2012 | Food Microbiology2012，30，1： | 1 |
| 15 | Preparation and Chiral Recognition of New Chiral Stationary Phases Derived from Cellulose Microspheres显示文摘A new way to prepare cellulose-type chiral stationary phases (CSPs) has been established in the present work.Cellulose microspheres with a volume-average diameter of 11.5 m were prepared by an emulsion-solidification method.Three new CSPs were obtained by crosslinking the cellulose microspheres with terephthaloyl chloride (TPC),and then modifying the crosslinked microspheres with 4-methylbenzoyl chloride,3,5-dimethylbenzoyl chloride and 3,5-dichlorobenzoyl chloride,respectively.The microspheres and the CSPs were characterized by FT-IR,element analysis and scanning electronic microscopy (SEM).The chiral recognition ability of the CSPs was evaluated with high-performance liquid chromatography (HPLC).The chromatographic results demonstrate that the CSP prepared from 3,5-dichlorobenzoyl chloride possesses better chiral recognition ability compared with two other CSPs. | JIN Fenfen ZHANG Juan CHEN Wei FAN Qingchun BAI Zhengwu | 2012 | Wuhan University Journal of Natural Sciences2012，17，3： | 1 |
| 16 | Biodegradation of carbendazim by a novel actinobacterium Rhodococcus jialingiae djl-6-2显示文摘 | Zhichun Wang Yangyang Wang Fenfen Gong Juan Zhang Qing Hong Shunpeng Li | 2010 | Chemosphere2010，，5： | 1 |
| 17 | Identification and characterization of RNA duplex unwinding and ATPase activities of an alphatetravirus superfamily 1 helicase显示文摘 | Qinrong Wang Yajuan Han Yang Qiu Shaoqiong Zhang Fenfen Tang Yan Wang Jiamin Zhang Yuanyang Hu Xi Zhou | 2012 | Virology2012，，： | 1 |
| 18 | Characterization of dissolved organic matter in submarine groundwater from a salt marsh in Chongming Island,China显示文摘Salt marshes are research hotspots of the carbon cycle in coastal zones because large amounts of atmospheric carbon dioxide is fi xed by salt marshes vegetation and stored in its biomass and soil.Dissolved organic carbon(DOC)in submarine groundwater(well water and pore water)in salt marshes plays an important role in advective exchange between the salt marshes and coastal waters.However,the molecular characteristics of DOC in salt marsh groundwater are poorly understood because of the complex DOC structures and hydrodynamic process.In this study,fl uorescent components and refractory DOC(RDOC)in submarine groundwater from a salt marsh(Chongming Island,China)and adjacent coastal water were characterized by fl uorescence spectroscopy and nuclear magnetic resonance spectroscopy.The fl uorescent components identifi ed by parallel factor analysis indicated that humic-like substances dominated the chromophoric dissolved organic matter in the submarine groundwater.The chromophoric dissolved organic matter and dissolved organic matter in the submarine groundwater had non-conservative behaviors because of additions from terrestrial humic substances.The nuclear magnetic resonance spectra indicated that bioactive substances(carbohydrates)contributed only 13.2%-14.8%of the dissolved organic matter in the submarine groundwater but carboxyl-rich alicyclic molecules(CRAMs),the main components of RDOC,contributed 64.5%of the dissolved organic matter.Carbohydrates and CRAMs contributed 16.4%and 61.7%of the dissolved organic matter in the coastal water,similar to the contributions for submarine groundwater.The DOC concentration in submarine groundwater was 386±294μmol/L,which was signifi cantly higher than that in coastal water(91±19μmol/L).The high DOC concentrations and>60%relative RDOC content suggested that submarine groundwater may be an important source of RDOC to coastal seawater.This information will be helpful for estimating the climate eff ects of salt marsh blue carbon. | Tangrong HE Fenfen ZHANG Yali WANG Xiaogang CHEN Jinzhou DU | 2022 | Journal of Oceanology and Limnology2022，40，1： | 1 |
| 19 | Progress in quantitative research on the relationship between atmospheric oxidation and air quality显示文摘Atmospheric oxidizing capacity(AOC)is an essential driving force of troposphere chemistry and self-cleaning,but the definition of AOC and its quantitative representation remain uncertain.Driven by national demand for air pollution control in recent years,Chinese scholars have carried out studies on theories of atmospheric chemistry and have made considerable progress in AOC research.This paper will give a brief review of these developments.First,AOC indexes were established that represent apparent atmospheric oxidizing ability(AOIe)and potential atmospheric oxidizing ability(AOIp)based on aspects of macrothermodynamics and microdynamics,respectively.A closed study refined the quantitative contributions of heterogeneous chemistry to AOC in Beijing,and these AOC methods were further applied in Beijing-Tianjin-Hebei and key areas across the country.In addition,the detection of ground or vertical profiles for atmospheric OH·,HO_(2)·,NO_(3)·radicals and reservoir molecules can now be obtained with domestic instruments in diverse environments.Moreover,laboratory smoke chamber simulations revealed heterogeneous processes involving reactions of O_(3)and NO_(2),which are typical oxidants in the surface/interface atmosphere,and the evolutionary and budgetary implications of atmospheric oxidants reacting under multispecies,multiphase and multi-interface conditions were obtained.Finally,based on the GRAPES-CUACE adjoint model improved by Chinese scholars,simulations of key substances affecting atmospheric oxidation and secondary organic and inorganic aerosol formation have been optimized.Normalized numerical simulations of AOIe and AOIp were performed,and regional coordination of AOC was adjusted.An optimized plan for controlling O_(3)and PM2.5was analyzed by scenario simulation. | Yuesi Wang Xin Jin Zirui Liu Gehui Wang Guiqian Tang Keding Lu Bo Hu Shanshan Wang Guohui Li Xinqin An Chao Wang Qihou Hu Lingyan He Fenfen Zhang Yuanhang Zhang | 2023 | Journal of Environmental Sciences2023，，1： | 1 |
| 20 | Biodiversity of yeasts, lactic acid bacteria and acetic acid bacteria in the fermentation of Shanxi aged vinegar, a traditional Chinese vinegar显示文摘 | WU Jiajia MA Yingkun ZHANG Fenfen | 2012 | Food Microbiology2012，30，1： | 1 |
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