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| 1 | Efficient indica and japonica rice identification based on the InDel molecular method:Its implication in rice breeding and evolutionary research显示文摘An efficient molecular method for the accurate and efficient identification of indica and japonica rice was created based on the poly-morphisms of insertion/deletion(InDel) DNA fragments obtained from the basic local alignment search tool(BLAST) to the entire genomic sequences of indica(93-11) and japonica rice(Nipponbare).The 45 InDel loci were validated experimentally by the polymerase chain reaction(PCR) and polyacrylamide gel electrophoresis(PAGE) in 44 typical indica and japonica rice varieties,including 93-11 and Nipponbare.A neutrality test of the data matrix generated from electrophoretic banding patterns of various InDel loci indicated that 34 InDel loci were strongly associated with the differentiation of indica and japonica rice.More extensive analyses involving cultivated rice varieties from 11 Asian countries,and 12 wild Oryza species with various origins confirmed that indica and japonica characteristics could accurately be determined via calculating the average frequency of indica-or japonica-specific alleles on different InDel loci across the rice genome.This method was named as the ''InDel molecular index' that combines molecular and statistical methods in determining the indica and japonica characteristics of rice varieties.Compared with the traditional methods based essentially on morphology,the InDel molecular index provides a very accurate,rapid,simple,and efficient method for identifying indica and japonica rice.In addition,the InDel index can be used to determine indica or japonica characteristics of wild Oryza species,which largely extends the utility of this method.The InDel molecular index provides a new tool for the effective selection of appropriate indica or japonica rice germplasm in rice breeding.It also offers a novel model for the study of the origin,evolution,and genetic differentiation of indica and japonica rice adapted to various environmental changes. | Bao-Rong Lu Xingxing Cai Xin Jin | 2009 | Progress in Natural Science:Materials International2009，19，10： | 40 |
| 2 | Recent progress of integrated circuits and optoelectronic chips显示文摘Integrated circuits(ICs)and optoelectronic chips are the foundation stones of the modern information society.The IC industry has been driven by the so-called'Moore's law'in the past 60 years,and now has entered the post Moore's law era.In this paper,we review the recent progress of ICs and optoelectronic chips.The research status,technical challenges and development trend of devices,chips and integrated technologies of typical IC and optoelectronic chips are focused on.The main contents include the development law of IC and optoelectronic chip technology,the IC design and processing technology,emerging memory and chip architecture,brain-like chip structure and its mechanism,heterogeneous integration,quantum chip technology,silicon photonics chip technology,integrated microwave photonic chip,and optoelectronic hybrid integrated chip. | Yue HAO Shuiying XIANG Genquan HAN Jincheng ZHANG Xiaohua MA Zhangming ZHU Xingxing GUO Yahui ZHANG Yanan HAN Ziwei SONG Yan LIU Ling YANG Hong ZHOU Jiangyi SHI Wei ZHANG Min XU Weisheng ZHAO Biao PAN Yangqi HUANG Qi LIU Yimao CAI Jian ZHU Xin OU Tiangui YOU Huaqiang WU Bin GAO Zhiyong ZHANG Guoping GUO Yonghua CHEN Yong LIU Xiangfei CHEN Chunlai XUE Xingjun WANG Lixia ZHAO Xihua ZOU Lianshan YAN Ming LI | 2021 | Science China(Information Sciences)2021，64，10： | 7 |
| 3 | Genome-wide identification of OSCA gene family and their potential function in the regulation of dehydration and salt stress in Gossypium hirsutum显示文摘Background:Cotton(Gossypium hirsutum) provides the largest natural fiber for the textile manufacturing industries,but its production is on the decline due to the effects of salinity.Soil salt-alkalization leads to damage in cotton growth and a decrease in yields.Hyperosmolality-gated calcium-permeable channels(OSCA) have been found to be involved in the detection of extracellular changes which trigger an increase in cytosolic free calcium concentration.Hyperosmolality-induced calcium ion increases have been widely speculated to be playing a role in osmosensing in plants.However,the molecular nature of the corresponding calcium ion channels remains unclearly.In this research work,we describe the OSCA genes and their putative function in osmosensing in plants by carrying out genomewide identification,characterization and functional analysis of the significantly up-regulated OSCA gene,GhOSCA1.1 through reverse genetics.Result:A total of 35,21 and 22 OSCA genes were identified in G.hirsutum,G.arboreum,and G.raimondii genomes,respectively,and were classified into four different clades according to their gene structure and phylogenetic relationship.Gene and protein structure analysis indicated that 35 GhOSCA genes contained a conserved RSN17 TM(PF02714) domain.Moreover,the cis-regulatory element analysis indicated that the OSCA genes were involved in response to abiotic stress.Furthermore,the knockdown of one of the highly up-regulated genes,GhOSCA1.1 showed that the virus-induced gene silenced(VIGS) plants were highly sensitive to dehydration and salinity stresses compared with the none VIGS plants as evident with higher concentration levels of oxidant enzymes compared with the antioxidant enzymes on the leaves of the stressed plants.Conclusion:This study provides the first systematic analysis of the OSCA gene family and will be important for understanding the putative functions of the proteins encoded by the OSCA genes in cotton.These results provide a new insight of defense responses in general and lay the foundation for further investigation of the molecular role played by the OSCA genes,thereby providing suitable approaches to improve crop performance under salinity and drought stress conditions. | YANG Xiu XU Yanchao YANG Fangfang MAGWANGA Richard Odongo CAI Xiaoyan WANG Xingxing WANG Yuhong HOU Yuqing WANG Kunbo LIU Fang ZHOU Zhongli | 2019 | Journal of Cotton Research2019，2，2： | 7 |
| 4 | Investigation of the influence of ultrasonic stirring on mass transfer in the through-mask electrochemical micromachining process显示文摘Surface texturing is a widely accepted approach for friction reduction between mechanical components. Through-mask electrochemical micromachining is a simple and reliable process for metal surface texturing in which mass transport conditions have profound influence on final machined quality. An ultrasonic stirrer is usually adopted for mass transfer enhancement.However, understanding of the effects of ultrasonic stirring on mass transfer is limited, and is far from sufficient for developing guidelines for its practical application. In this work, the influences of ultrasonic stirring parameters on mass transfer have been investigated numerically and experimentally. With the numerical method, periodic pressure change in the electrolyte over time has been obtained, showing that ultrasonic stirring results in drastic transient pressure change in electrolyte fluid fields. Parameters related to ultrasonic frequency, vibration amplitude, and the depth of anode surface immersed in the electrolyte solution influence pressure amplitude. Validation experiments have been conducted and etched surface profile and morphology characterized,which show that the experimental observations are in agreement with numerical predictions. With the optimized mass transfer,well-defined micro-pits array of 30 μm and a smooth etched surface on tin-bronze substrate in large scale have been demonstrated. | WANG QuanDai CAI XingXing WANG Li LI PengYang XIAO JiMing LI Yan | 2018 | Science China(Technological Sciences)2018，61，2： | 3 |
| 5 | Differentiation of Indica-Japonica rice revealed by insertion/deletion(InDel)fragments obtained from the comparative genomic study of DNA sequences between 93-11(Indica)and Nipponbare (Japonica)显示文摘DNA polymorphisms from nucleotide insertion/deletions(InDels)in genomic sequences are the basis for developing InDel molecular markers.To validate the InDel primer pairs on the basis of the comparative genomic study on DNA sequences between an Indica rice 93-11 and a Japonica rice Nipponbare for identifying Indica and Japonica rice varieties and studying wild Oryza species,we studied 49 Indica,43 Japonica,and 24 wild rice accessions collected from ten Asian countries using 45 InDel primer pairs.Results indicated that of the 45 InDel primer pairs,41 can accurately identify Indica and Japonica rice varieties with a reliability of over 80%.The scatter plotting data of the principal compo-nent analysis(PCA)indicated that:(i)the InDel primer pairs can easily distinguish Indica from Japonica rice varieties,in addition to revealing their genetic differentiation;(ii)the AA-genome wild rice species showed a relatively close genetic relationship with the Indica rice varieties;and(iii)the non-AA genome wild rice species did not show evident differentiation into the Indica and Japonica types.It is con-cluded from the study that most of the InDel primer pairs obtained from DNA sequences of 93-11 and Nipponbare can be used for identifying Indica and Japonica rice varieties,and for studying genetic relationships of wild rice species,particularly in terms of the Indica-Japonica differentiation. | CAI Xingxing LIU Jing QIU Yinqiu ZHAO Wei SONG Zhiping LU Baorong | 2007 | Frontiers in Biology2007，2，3： | 1 |
| 6 | Pervasive hybridization during evolutionary radiation of Rhododendron subgenus Hymenanthes in mountains of southwest China显示文摘Radiations are especially important for generating species biodiversity in mountainous ecosystems.The contribution of hybridization to such radiations has rarely been examined.Here,we use extensive genomic data to test whether hybridization was involved in evolutionary radiation within Rhododendron subgenus Hymenanthes,whose members show strong geographic isolation in the mountains of southwest China.We sequenced genomes for 143 species of this subgenus and 93 species of four other subgenera,and found that Hymenanthes was monophyletic and radiated during the late Oligocene to middle Miocene.Widespread hybridization events were inferred within and between the identified clades and subclades.This suggests that hybridization occurred both early and late during diversification of subgenus Hymenan thes,although the extent to which hybridization,speciation through mixing-isolation-mixing or hybrid speciation,accelerated the diversification needs further exploration.Cycles of isolation and contact in such and other montane ecosystems may have together promoted species radiation through hybridization between diverging populations and species.Similar radiation processes may apply to other montane floras in this region and elsewhere. | Yazhen Ma Xingxing Mao Ji Wang Lei Zhang Yuanzhong Jiang Yuying Geng Tao Ma Liming Cai Shuangquan Huang Pete Hollingsworth Kangshan Mao Minghui Kang Yiling Li Wenlu Yang Haolin Wu Yang Chen Charles C.Davis Nawal Shrestha Richard H.Ree Zhenxiang Xi Quanjun Hu Richard I.Milne Jianquan Liu | 2022 | National Science Review2022，9，12： | 1 |
| 7 | Soil respiration and its partitioning in different components in tropical primary and secondary mountain rain forests in Hainan Island,china显示文摘Aims Soil respiration is one of the most important components in the car-bon(c)cycle in terrestrial ecosystems.to investigate the contribution of each component of c cycle to the total soil c efflux,we quantified the rates of litter,root,and other mineral soil respiration from 2012 to 2014 in the primary and secondary tropical mountain rain forests in Hainan Island,china.Methods the seasonal dynamics of soil(Rs),non-litter(RNL)and non-root(RNR)respiration rates were measured using an automatic chamber system(Li-8100).Litter removal and root removal treatments were used to assess the contribution of litter and roots to belowground c production.We estimated the annual c efflux of each compo-nent of soil respiration in primary and secondary forests using a temperature-based exponential model and analyzed the impact of each component in each forest type.Important Findingsthe annual total soil c efflux was significantly higher in the primary rain forest(1567±205 g c m^(−2)yr^(−1))than that in the secondary forest(1300±70 g c m^(−2)yr^(−1),P<0.05).the litter,root,and mineral soils contributed 22%(349±185 g c m^(−2)yr^(−1)),38%(589±100 g c m^(−2)yr^(−1)),and 40%(628±128 g c m^(−2)yr^(−1))to the total soil c efflux in primary rain forest,respectively.In secondary forest,these three components contributed 11%(148±35 g c m^(−2)yr^(−1)),45%(572±259 g c m^(−2)yr^(−1)),and 44%(580±226 g c m^(−2)yr^(−1)),respectively.the temperature sensitivity(Q10)of Rs(2.70±0.14)in the primary forest was significantly higher than that in the secondary forest(2.34±0.12),with the Q10 values for respiration decreasing in the order of RNR>Rs>RNL.these results show that the difference in litter respiration between primary and secondary forest caused the major difference in annual soil respiration efflux between these two forest types.In addition,the litter respiration is more sensitive to the soil temperature than the other soil respiration components. | Lai Jiang Suhui Ma Zhang Zhou Tianli Zheng Xingxing Jiang Qiong Cai Peng Li Jianxiao Zhu Yide Li Jingyun Fang | 2017 | Journal of Plant Ecology2017，10，5： | 1 |
| 8 | Impact of Sampling Rate of IGS Satellite Clock on Precise Point Positioning显示文摘Both static and kinematic testings are investigated by using IGS 5min, 30s and 5s-interval precise satellite clock products in precise point positioning (PPP) solution. Test results show that the sampling rate of IGS satellite clock has very little effect on the static PPP solution. All the three types of sampling intervals of precise satellite clock can satisfy mm-cm level of positioning accuracy; higher sampling rate has no significant improvement for PPP solution. However, sampling rate of satellite clock has a significant impact on the PPP solution in kinematic PPP. The higher the interval of satellite clock, the better the accuracy achieved. The accuracy of kinematic PPP achieved by using 30s-interval precise satellite clock is improved by nearly 30-50 percent with respect to the solution by using 5min-interval precise satellite clock, but using 5s and 30s-interval satellite clock can almost produce the same accuracy of kinematic solution. Moreover, the use of precise satellite clock products from different analysis centers may also produce more or less effect on the PPP solution. | GUO Fei ZHANG Xiaohong LI Xingxing CAI Shixiang | 2010 | Geo-Spatial Information Science2010，13，2： | 1 |
| 9 | Security Enhancement of Arbiter-Based Physical Unclonable Function on FPGA显示文摘In order to reduce physical unclonable function(PUF)response instability and imbalance caused by the metastability and the bias of arbiter,this paper uses an improved balanced D flip-plop(DFF)based on the unbalanced DFF to reduce the bias in response output and enhances the security of PUF by adopting two balanced DFFs in series. The experimental results show that two cascaded balanced DFFs improve the stability of the DFF,and the output of two balanced DFFs is more reliable. The entropy of output is fixed at 98.7%. | WANG Jun LIU Shubo XIONG Xingxing LIANG Cai | 2017 | Wuhan University Journal of Natural Sciences2017，22，2： | 1 |
| 10 | Experimental validation of inter-subspecific genetic diversity in rice represented by the differences between the DNA sequences of 'Nipponbare' and '93-11'显示文摘The pedigrees of three sequenced rice cultivars were analyzed to show that a majority of the genetic composition of 'Nipponbare' originates from japonica cultivars while the minority originates from indica cultivars. In contrast, '93-11' is derived mainly from indica cultivars with a smaller contribution from japonica cultivars. All ancestors of 'Guang lu ai 4' appeared to be indica lines. A set of molecular markers (46 InDels and 53 SSRs) polymorphic between 'Nipponbare' and '93-11' were examined in 46 typical indica and 47 typical japonica cultivars selected from 443 accessions according to Cheng's index. All cultivars were divided into indica and japonica groups without overlapping when clustered by Cheng's index, InDels and SSRs. Much higher InDel and SSR diversity between groups than within groups implies that the marker polymorphisms between 'Nipponbare' and '93-11' represent a large proportion of inter-subspecific diversity. About 85% of indica cultivars and more than 90% of japonica cultivars were confirmed to have the same PCR banding patterns as '93-11' and 'Nipponbare', respectively. Some polymorphic loci between 'Nipponbare' and '93-11' cannot be validated in other indica and japonica cultivars, either as subspecies-specific but not predominant alleles, or alleles not specific between the two groups. It was concluded that molecular markers developed from sequence polymorphism between 'Nipponbare' and '93-11' often represent inter-subspecific diversity, although some exceptions were sensitive to either particular marker loci or particular cultivars. | MEI HanWei FENG FangJun LU BaoRong WEN WeiWei Andrew H. PATERSON CAI XingXing CHEN Liang Frank A. FELTUS XU XiaoYan WU JingHong YU XinQiao CHEN HongWei LI Ying LUO LiJun | 2007 | Chinese Science Bulletin2007，52，10： | 0 |
| 11 | Exploring the psychological impact of the 2022 SARS-CoV-2 Omicron variant outbreak in China显示文摘To the editor:The impact of the coronavirus disease 2019(COVID-19)pandemic in 2020 on mental health was substantialin Chinai2and various other countries.34 Beyond the direct consequences of COVID-19,the pandemic created an environment in which many determinants of mental health were affected.Issues associated with the pandemic,such as loss of livelihood,limited access to medical services,reduced social interactions,and economic downturn,could potentially have adverse effects on the population's mental well-being.5 In November 2021,the World Health Organization(WHO)designated the new variant of the severe acute respiratory syndrome coronavirus 2(SARS-CoV-2),variant B.1.1.529,as a variant of concern and named it Omicron;its rapid mutation and spread raised a new global health concern. | Gangbin Han Guirong Cheng Feifei Hu Chunli Li Dan Liu Juan Zhou Jing Liu Linya Huang Xiaochang Liu Qianqian Nie Dan Song Deyang Zeng Lang Xu Jinquan Li Yushan Chen Zhen Wei Qiong Wu Xiaoming He Qingming Wu Wei Tan Yufei Mei Xingxing Chen Yangming Ou Jingjing ZhangYafu Yu Mengliu Yang Pengfei Lian Fukai Zhou Renjia Fan Hong Wan Chenlu Hu Yidi Fu Shiyue Li Junyi Wang Cheng Cai Mengdie Pei Yuyang Cui Wanying Cai Yiqing Li Shiyao Pan Chang Chen Yan He Zhaoxia Wu Liu Hu Liang Tao Hongyan Xiao Xinyan Xie Yan Zeng | 2023 | General Psychiatry2023，36，6： | 0 |
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