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| 1 | Cloning of Ln Gene Through Combined Approach of Map-based Cloning and Association Study in Soybean显示文摘Increasing yield is one of the most important goals in crop breeding.Soybean(Glycine max L.Merr.),one of the most economically important leguminous seed crops,provides the majority of plant proteins,and more than a quarter of the world's food and animal feed(Graham and Vance,2003). The yield of soybean is finally determined by the number of seeds per unit area,which affected by many characters,such as height,branching number,photosynthesis,seed size,seed number.The number of seeds per pod is taken for one of the critical components that related to yield(You et al.,1995),and it has long been considered in soybean production(Takahashi, | Chao Fang Weiyu Li Guiquan Li Zheng Wang Zhengkui Zhou Yanming Ma Yanting Shen Congcong Li Yunshuai Wu Baoge Zhu Weicai Yang Zhixi Tian | 2013 | Journal of Genetics and Genomics2013，40，2： | 7 |
| 2 | Global transcriptome analysis for identification of interactions between coding and noncoding RNAs during human erythroid differentiation显示文摘在 erythroid 开发期间编码基因, miRNAs,和 lncRNAs 上的研究在最近的年里被执行了。然而,集中于三种 RNA 类型的集成的分析还得被做。在现在的学习,我们比较了编码基因, miRNA,和 lncRNA 表示侧面的动力学。为了在在 transcriptome 控制这些变化的红血球生成和潜在的机制探索动态变化,铺平,我们利用了定序技术从绳索血获得 transcriptome 数据的高产量造血的干细胞和下列四个 erythroid 区别阶段,以及从成熟的红血房间。结果显示 lncRNAs 为 erythroid 区别正在答应房间标记候选人。聚类分析分类差别表示基因进在 stemness 维护期间对应于动态变化的四种子类型,中间区别,并且成熟。综合分析揭示了 RNA 潜在地参予了控制血细胞成熟的那 noncoding,并且特别与到氧种类和 DNA 损坏的 heme 新陈代谢和回答联系了。这些规章的相互作用在一个全面网络,在 RNA 之间的从而推断的关联和他们的联系功能被显示。这些数据为正常红血球生成的学习提供了一个大量的资源,它将允许 erythroid 开发的进一步的调查和理解并且获得 erythroid 混乱。 | Nan Ding Jiafei Xi Yanming Li Xiaoyan Xie Jian Shi Zhaojun Zhang Yanhua Li Fang Fang Sihan Wang Wen Yue Xuetao Pei Xiangdong Fang | 2016 | Frontiers of Medicine2016，10，3： | 6 |
| 3 | Carbon Storage and Vertical Distribution in Three Shrubland Communities in Gurbantünggüt Desert,Uygur AutonomousRegion of Xinjiang,Northwest China显示文摘This study was carried out in the Gurbantünggüt Desert,Uygur Autonomous Region of Xinjiang,Northwest China in August,2009.To quantify the storage,contribution and vertical distribution patterns of plant biomass carbon (PBC)and soil organic carbon(SOC)in the study area,we investigated the carbon concentrations and its vertical distribution in three different desert shrubland communities dominated by Reaumuria soongorica,Haloxylon ammodendron+R.soongorica and Tamarix ramosissima+R.soongorica,respectively.We analyzed vertical distribution of root biomass carbon and soil carbon contents by excavating soil profiles for each dominated community.The results show that SOC is considerably the larger carbon pool in the soil layers of 1.0-3.0 m(the mean value of three shrubland communities is 38.46%)and 3.0-5.0 m(the mean value is 40.24%).In contrast,70.74%of belowground biomass carbon storage in 0-1.0 m layer,and its content decrease with increasing soil depth.The Haloxylon ammodendron+R. soongorica shrubland community has the highest belowground biomass carbon among three selected communities. This study highlights the importance of SOC stored in deep soil layers(lower than 3.0 m from the surface)in arid shrubland communities in the global carbon balance.In addition,it provides the data support for revealing deep soil solid carbon potential,and offers scientific basis for the further research in the carbon cycle of terrestrial ecosystem. | GONG Yanming HU Yukun FANG Fei LIU Yanyan LI Kaihui ZHANG Guangming | 2012 | Chinese Geographical Science2012，22，5： | 6 |
| 4 | Characterization of miRNomes in Acute and Chronic Myeloid Leukemia Cell Lines显示文摘Myeloid leukemias are highly diverse diseases and have been shown to be associated with microRNA(miRNA) expression aberrations. The present study involved an in-depth miRNome analysis of two human acute myeloid leukemia(AML) cell lines, HL-60 and THP-1, and one human chronic myeloid leukemia(CML) cell line, K562, via massively parallel signature sequencing. mRNA expression profiles of these cell lines that were established previously in our lab facilitated an integrative analysis of miRNA and mRNA expression patterns. miRNA expression profiling followed by differential expression analysis and target prediction suggested numerous miRNA signatures in AML and CML cell lines. Some miRNAs may act as either tumor suppressors or oncomiRs in AML and CML by targeting key genes in AML and CML pathways. Expression patterns of cell type-specific miRNAs could partially reflect the characteristics of K562, HL-60 and THP-1 cell lines, such as actin filament-based processes, responsiveness to stimulus and phagocytic activity. miRNAs may also regulate myeloid differentiation, since they usually suppress differentiation regulators. Our study provides a resource to further investigate the employment of miRNAs in human leukemia subtyping, leukemogenesis and myeloid development. In addition, the distinctive miRNA signatures may be potential candidates for the clinical diagnosis, prognosis and treatment of myeloid leukemias. | Qian Xiong Yadong Yang Hai Wang Jie Li Shaobin Wang Yanming Li Yaran Yang Kan Cai Xiuyan Ruan Jiangwei Yan Songnian Hu Xiangdong Fang | 2014 | Genomics, Proteomics & Bioinformatics2014，12，2： | 6 |
| 5 | Denoising of X-ray pulsar observed profile using biorthogonal lifting wavelet transform显示文摘In X-ray pulsar-based navigation, strong X-ray background noise leads to a low signal-to-noise ratio(SNR) of the observed profile, which consequently makes it very difficult to obtain an accurate pulse phase that directly determines the navigation precision. This signifies the necessity of denoising of the observed profile. Considering that the ultimate goal of denoising is to enhance the pulse phase estimation, a profile denoising algorithm is proposed by fusing the biorthogonal lifting wavelet transform of the linear phase characteristic with the thresholding technique. The statistical properties of X-ray background noise after epoch folding are studied. Then a wavelet-scale dependent threshold is introduced to overcome correlations between wavelet coefficients. Moreover, a modified hyperbola shrinking function is presented to remove the impulsive oscillations of the observed profile. The results of numerical simulations and real data experiments indicate that the proposed method can effectively improve SNR of the observed profile and pulse phase estimation accuracy, especially in short observation durations. And it also outperforms the Donoho thresholding strategy normally used in combination with the orthogonal discrete wavelet transform. | Mengfan Xue Xiaoping Li Yanming Liu Haiyan Fang Haifeng Sun Lirong Shen | 2016 | Journal of Systems Engineering and Electronics2016，27，3： | 3 |
| 6 | Mapping Human Pluripotent Stem Cell-derived Erythroid Differentiation by Single-cell Transcriptome Analysis显示文摘There is an imbalance between the supply and demand of functional red blood cells(RBCs)in clinical applications.This imbalance can be addressed by regenerating RBCs using several in vitro methods.Induced pluripotent stem cells(iPSCs)can handle the low supply of cord blood and the ethical issues in embryonic stem cell research,and provide a promising strategy to eliminate immune rejection.However,no complete single-cell level differentiation pathway exists for the iPSC-derived erythroid differentiation system.In this study,we used iPSC line BC1 to establish a RBC regeneration system.The 10X Genomics single-cell transcriptome platform was used to map the cell lineage and differentiation trajectory on day 14 of the regeneration system.We observed that iPSC differentiation was not synchronized during embryoid body(EB)culture.The cells(on day 14)mainly consisted of mesodermal and various blood cells,similar to the yolk sac hematopoiesis.We identified six cell classifications and characterized the regulatory transcription factor(TF)networks and cell-cell contacts underlying the system.iPSCs undergo two transformations during the differentiation trajectory,accompanied by the dynamic expression of cell adhesion molecules and estrogen-responsive genes.We identified erythroid cells at different stages,such as burst-forming unit erythroid(BFU-E)and orthochromatic erythroblast(ortho-E)cells,and found that the regulation of TFs(e.g.,TFDP1 and FOXO3)is erythroid-stage specific.Immune erythroid cells were identified in our system.This study provides systematic theoretical guidance for optimizing the iPSC-derived erythroid differentiation system,and this system is a useful model for simulating in vivo hematopoietic development and differentiation. | Zijuan Xin Wei Zhang Shangjin Gong Junwei Zhu Yanming Li Zhaojun Zhang Xiangdong Fang | 2021 | Genomics, Proteomics & Bioinformatics2021，19，3： | 2 |
| 7 | Inter-and intra-specific phenotypic variation of ecological stoichiometric traits in a mixed-oak secondary forest in China显示文摘Ecological stoichiometry provides a framework for the balance and flow of elements between organisms and ecosystems.Elemental phenotypes have an important influence on the environmental adaptation and ecological evolution of plants.There have been few reports on inter-and intra-specific phenotypic variations of ecological stoichiometric traits for congeneric species in a mixed forest although such variations are well-documented at the species level at global,regional and local scales.In this study,total carbon(TC),nitrogen(TN),phosphorus(TP)and potassium(TK)were measured in leaves and the elemental phenotypes were statistically analyzed in four species of oaks—Quercus fabri,Q.serrata var.glandulifera,Q.acutissima and Q.variabilis—in a mixed-oak secondary forest in Yushan,Jiangsu,China.The average element concentrations in the four oak species were not relatively higher than previously reported for oaks from world and Chinese flora.Ecological stoichiometry traits were correlated with tree height and diameter at breast height,indicating that phosphorous and potassium were positively correlated with tree size,while carbon was negatively correlated,especially the relationship between oak growth and total carbon or total phosphorus was obvious,and the study concluded that this was because plant growth depended on phosphorus storage and had opposite effects on leaf carbon accumulation.Based on tree plasticity index and the coefficient of variation,there was medium variation in element concentrations.The plasticity index of total carbon levels was the lowest,and that of potassium the highest.Principal component analysis and cluster analysis showed that the intra-specific variation among the four oak species was higher than inter-specific variation.From the perspective of nutrient supply and ecological adaptation,this study creates a foundation for the management of secondary oak forest stands. | Yueyao Feng Xuan Li Biyao Zhou Rong Hu Huanchao Zhang Jiading Yang Yanming Fang | 2021 | Journal of Forestry Research2021，32，6： | 2 |
| 8 | The decoction of Radix Astragali inhibits the growth of Microcystis aeruginosa显示文摘 | Rong Yan Yonghong Wu Hongli Ji Yanming Fang Philip G. Kerr Linzhang Yang | 2011 | Ecotoxicology and Environmental Safety2011，，4： | 1 |
| 9 | The decoction of Radix Astragali inhibits the growth of Microcystis aeruginosa显示文摘 | Rong Yan Yonghong Wu Hongli Ji Yanming Fang Philip G. Kerr Linzhang Yang | 2011 | Ecotoxicology and Environmental Safety2011，，4： | 1 |
| 10 | Shale gas reservoir characterisation: A typical case in the southern Sichuan Basin of China显示文摘 | Shangbin Chen Yanming Zhu Hongyan Wang Honglin Liu Wei Wei Junhua Fang | 2011 | Energy2011，，11： | 1 |
| 11 | Benthic nutrient fluxes in the intertidal flat within the Changjiang (Yangtze River) Estuary显示文摘In an annual cycle from March 2005 to February 2006, benthic nutrient fluxes were measured monthly in the Dongtan intertidal flat within the Changjiang (Yangtze River) Estuary. Except for NH4+, there always showed high fluxes from overlying water into sediment for other four nutrients. Sediments in the high and middle marshes, covered with halophyte and consisting of macrofauna, demonstrated more capabilities of assimilating nutrients from overlying water than the low marsh. Sampling seasons and nutrient concentrations in the overlying water could both exert significant effects on these fluxes. Additionally, according to the model provided by previous study, denitrifica- tion rates, that utilizing NO3- transported from overlying water (DW) in Dongtan sediments, were estimated to be from -16 to 193 μmol·h-1·m-2 with an average value of 63 μmol·h-1·m-2 (n=18). These estimated values are still un- derestimates of the in-situ rates owing to the lack of consideration of DN, i.e., denitrification supported by the local NO3- production via nitrification. | GAO Lei LI Daoji WANG Yanming YU Lihua KONG Dingjiang LI Mei LI Yun FANG Tao | 2008 | Chinese Journal Of Geochemistry2008，27，1： | 1 |
| 12 | Interspecific hybrids between Dendranthema morifolium (Ramat.) Kitamura and D. nankingense (Nakai) Tzvel. achieved using ovary rescue and their cold tolerance characteristics显示文摘 | Xi Cheng Sumei Chen Fadi Chen Weimin Fang Yanming Deng Linfang She | 2010 | Euphytica2010，，1： | 1 |
| 13 | Rasl and Ras2 play antagonistic roles in regulating cellular cAMP level, stationary - phase entry and stress response in Candida albicans 显示文摘 | Zhu Yong Fang Haoming Wang Yanming | 2009 | Molecular Microbiology2009，74，4： | 1 |
| 14 | Electrolyte Effect on Photoetching of Gallium Nitride显示文摘The limited material removal rate of conventional chemical mechanical polishing(CMP)significantly hinders the fabrica-tion efficiency and surface quality,thereby preventing the development of gallium nitride(GaN)-based devices.Moreover,the incorporation of photoelectrochemistry in CMP has garnered increasing attention because of its potential to enhance the quality and efficiency of the GaN process.However,a considerable gap still exists in the comprehensive understanding of the specific photoelectrochemical(PEC)behavior of GaN.Here,we report the influence of the electrolyte on the PEC etching of GaN.Various acids and bases were tested,with their pH being carefully adjusted.The concentrations of the cations and anions were also examined.The results showed that photocorrosion/photoetching was more pronounced in sulfuric acid,phosphoric acid,and nitric acid environments than in alkaline environments,but it was less pronounced in hydrochloric acid.Furthermore,the effects of pH and anion concentration on photoetching were investigated,and the results revealed that pho-toetching in acidic environments weakened with increasing pH levels and diminished with increasing sulfate concentration.The underlying reasons contributing to this observation were explored.These findings provide ideas for improving the pho-toetching efficiency of GaN,thereby enriching the photoelectrochemical mechanical polishing(PECMP)technology of GaN. | Huiqiang Liang Zhenghao Wei Jiongchong Fang Yanming Li Changli Li Zhirun Xie Yun Hau Ng Guosong Zeng | 2024 | Nanomanufacturing and Metrology2024，7，1： | 0 |
| 15 | Status of transjugular intrahepatic portosystemic shunt for portal hypertension in China:A national survey analysis显示文摘Aim:The transjugular intrahepatic portosystemic shunt(TIPS)procedure has been performed in China for 30 years,but our understanding of the status and difficulties associated with the use of TIPS for portal hypertension is incomplete.This study aims to investigate the current situation of the use of TIPS for portal hypertension,which should aid the development of TIPS in China.Methods:This study involved a questionnaire survey,initiated by the China Portal Hypertension Alliance(CHESS)to investigate the use of TIPS for portal hypertension in China.Questionnaires were released on the Internet between August 16,2022 and September 16,2022.Detailed information was collected from 545 hospitals contracted by the CHESS in China,which performed TIPS surgery in 2021.Results:The 545 hospitals covers the majority of hospitals in China that conduct TIPS intervention.In the survey,a total of 13,527 TIPS interventions were carried out with 94.1%(498/545)of them had a system of routine follow‐up after TIPS.The majority(42.6%[232/545])believed that the main indication of TIPS was the control of acute bleeding.Overall,48.1%(262/545)carried out early or pre‐emptive TIPS,53.0%(289/545)carried out TIPS for cavernous transformation of the portal vein,and 81.0%(441/545)chose routine embolization of collateral circulation during operation.Most used coils(97.0%[475/490])and biological glue(72.0%[353/490])as embolic materials,and 78.5%(428/545)routinely performed intraoperative portal pressure gradient measurements.When selecting TIPS stents,57.1%(311/545)chose viator‐specific stents,and 57.2%(312/545)chose conventional anticoagulation after TIPS.Conventional anticoagulation after TIPS is over a time interval of 3–6 months(55.4%[173/312]).The limitation of TIPS surgery is mainly its cost(72.3%[394/545])and insufficient understanding of the procedure by doctors in other related departments(77.4%[422/545]).Most of the hospital teams accept the use of domestic instruments in TIPS surgery(92.7%[505/545]).Conclusions:This survey shows that TIPS is an essential part of the treatment of portal hypertension in China.TIPS is widely used in Chinese patients with portal hypertension,and this survey presents a more comprehensive picture of the options and difficulties encountered in the implementation of TIPS.In the future,it is necessary to promote TIPS technology and further standardize surgical indications,routine operations,and instrument application. | Haibo Shao Xinwei Han Jianbo Zhao Junhui Sun Zhuting Fang Bin Xiong Xiaoli Zhu Weixin Ren Min Yuan Shiping Yu Meng Niu Weifu Lv Xueqiang Zhang Chunqing Zhang Lei Li Xuefeng Luo Yusheng Song Yilong Ma Tong Dang Hua Xiang Yun Jin Hui Xue Guiyun Jin Xiao Li Jiarui Li Shi Zhou Changlu Yu Song He Lei Yu Hongmei Zu Jun Ma Yanming Lei Ke Xu Xiaolong Qi | 2023 | Portal Hypertension & Cirrhosis2023，2，1： | 0 |
| 16 | Circuit-Specific Control of Blood Pressure by PNMT‑Expressing Nucleus Tractus Solitarii Neurons显示文摘The nucleus tractus solitarii(NTS)is one of the morphologically and functionally defined centers that engage in the autonomic regulation of cardiovascular activity.Phenotypically-characterized NTS neurons have been implicated in the differential regulation of blood pressure(BP).Here,we investigated whether phenylethanolamine N-methyltransferase(PNMT)-expressing NTS(NTS^(PNMT))neurons contribute to the control of BP.We demonstrate that photostimulation of NTS^(PNMT)neurons has variable effects on BP.A depressor response was produced during optogenetic stimulation of NTS^(PNMT)neurons projecting to the paraventricular nucleus of the hypothalamus,lateral parabrachial nucleus,and caudal ventrolateral medulla.Conversely,photostimulation of NTS^(PNMT)neurons projecting to the rostral ventrolateral medulla produced a robust pressor response and bradycardia.In addition,genetic ablation of both NTS^(PNMT)neurons and those projecting to the rostral ventrolateral medulla impaired the arterial baroreflex.Overall,we revealed the neuronal phenotype-and circuit-specific mechanisms underlying the contribution of NTS^(PNMT)neurons to the regulation of BP. | Shirui Jun Xianhong Ou Luo Shi Hongxiao Yu Tianjiao Deng Jinting Chen Xiaojun Nie Yinchao Hao Yishuo Shi Wei Liu Yanming Tian Sheng Wang Fang Yuan | 2023 | Neuroscience Bulletin2023，39，8： | 0 |
| 17 | Optoelectronic Synapses Based on MXene/Violet Phosphorus van der Waals Heterojunctions for Visual‑Olfactory Crossmodal Perception显示文摘The crossmodal interaction of different senses,which is an important basis for learning and memory in the human brain,is highly desired to be mimicked at the device level for developing neuromorphic crossmodal perception,but related researches are scarce.Here,we demonstrate an optoelectronic synapse for vision-olfactory crossmodal perception based on MXene/violet phosphorus(VP)van der Waals heterojunctions.Benefiting from the efficient separation and transport of photogenerated carriers facilitated by conductive MXene,the photoelectric responsivity of VP is dramatically enhanced by 7 orders of magnitude,reaching up to 7.7 A W^(−1).Excited by ultraviolet light,multiple synaptic functions,including excitatory postsynaptic currents,pairedpulse facilitation,short/long-term plasticity and“learning-experience”behavior,were demonstrated with a low power consumption.Furthermore,the proposed optoelectronic synapse exhibits distinct synaptic behaviors in different gas environments,enabling it to simulate the interaction of visual and olfactory information for crossmodal perception.This work demonstrates the great potential of VP in optoelectronics and provides a promising platform for applications such as virtual reality and neurorobotics. | Hailong Ma Huajing Fang Xinxing Xie Yanming Liu He Tian Yang Chai | 2024 | Nano-Micro Letters2024，16，6： | 0 |
| 18 | Chloroplast DNA Underwent Independent Selection from Nuclear Genes during Soybean Domestication and Improvement显示文摘The chloroplast is one of the most important organs in plants because of its essential role in photosynthesis.Studies have shown that the chloroplast was once a free-living cyanobacteria and was integrated into the host species through endosymbiosis(Goksoyr.1967).after which a large number of its genes had been donated to the host nuclear genome(Heins | Chao Fang Yanming Ma Lichai Yuan Zheng Wang Rui Yang Zhengkui Zhou Tengfei Liu Zhixi Tian | 2016 | Journal of Genetics and Genomics2016，43，4： | 0 |
| 19 | Long noncoding RNA PCED1B-AS1 promotes erythroid differentiation coordinating with GATA1 and chromatin remodeling显示文摘Erythropoiesis is a complex and sophisticated multi-stage process regulated by a variety of factors,including the transcription factor GATA1 and non-coding RNA.GATA1 is regarded as an essential transcriptional regulator promoting transcription of erythroidspecific genes—such as long non-coding RNAs(lncRNA).Here,we comprehensively screened lncRNAs that were potentially regulated by GATA1 in erythroid cells.We identified a novel lncRNA—PCED1B-AS1—and verified its role in promoting erythroid differentiation of K562 erythroid cells.We also predicted a model in which PCED1B-AS1 participates in erythroid differentiation via dynamic chromatin remodeling involving GATA1.The relationship between lncRNA and chromatin in the process of erythroid differentiation remains to be revealed,and in our study we have carried out preliminary explorations. | Junwei Zhu Yunxiao Ren Yuanyuan Han Tingting Jin Yanming Li Xiuyan Ruan Hongzhu Qu Shengwen Huang Zhaojun Zhang Xiangdong Fang | 2019 | Blood Science2019，1，2： | 0 |
| 20 | Neighborhood diversity structure and neighborhood species richness effects differ across life stages in a subtropical natural secondary forest显示文摘Natural secondary forest has a strong capacity to regrow naturally and recover biodiversity rapidly on abandoned lands.However,at the neighborhood scale,which can truly reflect the facilitative or competitive interactions among individual plants,the local diversity spatial structure in secondary forest and the feedback effects of neighborhood diversity on natural regeneration remain unclear,and this may be the key to properly understand the mechanisms of natural secondary forest species diversity recovery.To this end,this study established a dynamic plot in a rehabilitated secondary forest after disturbance and conducted a comprehensive survey of 68,336 individual plants with repeated measurements at 5-year interval to assess the characteristics of neighborhood diversity structure across life history stages and link the neighborhood species richness(NSR)effect translated by species interactions at species diversity structure with individual trees recruitment/mortality in secondary forest regeneration.The results showed that,compared with tropical and temperate natural forests,a higher proportion of diversity accumulators and a lower proportion of repellers in subtropical secondary forests resulted in neighborhood diversity structures characterized by heterospecific or high-diversity patches,which are beneficial to the maintenance or restoration of biodiversity.As an important supplement to the research on the relationship between diversity and productivity,our findings show a positive diversity-survival relationship in subtropical secondary forests.Importantly,we observed that the neighborhood diversity structure exhibited a trend of accumulator-dominated to neutral-dominant changes with life stage from sapling to adult,which,in turn,determined the direction and strength of NSR effects on recruitment/mortality.Specifically,diverse local neighborhoods at a later successional stage characterized with‘neutral’species-species interactions can act as a‘welfare net’by offering favorable microhabitats for the most vulnerable recruitments or saplings,i.e.,the NSR effects that promoted individual recruitment/survival in our study.These results not only enrich our understanding of the biodiversity-productivity-survival relationship but also highlight the importance of retaining latesuccessional species of native trees in intensive forest production or in situ conservation policies. | Haonan Zhang Shuifei Chen Xiao Zheng Xiaomin Ge Yao Li Yanming Fang Peng Cui Hui Ding | 2022 | Forest Ecosystems2022，9，6： | 0 |
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