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| 1 | Rice 2020: A Call For An International Coordinated Effort In Rice Functional Genomics显示文摘我们在在一个工程形式的功能的 genomics 说出 RICE2020 的米饭为一个国际协调努力描述一个电话。工程的使命将是:在一年 2020 在米饭染色体决定每基因的功能,从米饭的主要基因水池的有用基因研究基因改进为农业上识别等位基因的功能的差异,并且使用功能的 genomics 的调查结果到米饭。 | Qifa Zhang Jiayang Li Yongbiao Xue Bin Han Xing Wang Deng | 2008 | Molecular Plant2008，1，5： | 30 |
| 2 | Calcineurin B-like interacting protein kinase OsCIPK23 functions in pollination and drought stress responses in rice (Oryza sativa L.)显示文摘Drought is very harmful to grain yield due to its adverse effect on reproduction, especially on pollination process in rice. However, the molecular basis of such an effect still remains largely unknown. Here, we report the role of a member of CBL (Calcineurin B-Like) Interacting Protein Kinase (CIPK) family, OsCIPK23, in pollination and stress responses in rice. Molecular analyses revealed that it is mainly expressed in pistil and anther but up-regulated by pollination, as well as by treatments of various abiotic stresses and phytohormones. RNA interference-mediated suppression of OsCIPK23 expression significantly reduced seed set and conferred a hypersensitive response to drought stress, indicating its possible roles in pollination and drought stress. In consistent, overexpression of OsCIPK23 induced the expression of several drought tolerance related genes. Taken together, these results indicate that OsCIPK23 is a multistress induced gene and likely mediates a signaling pathway commonly shared by both pollination and drought stress responses in rice. | Wenqiang Yang Zhaosheng Kong Edith Omo-Ikerodah Wenying Xu Qun Li Yongbiao Xue | 2008 | Journal of Genetics and Genomics2008，35，9： | 21 |
| 3 | Geomicrobial functional groups:A window on the interaction between life and environments显示文摘Microbes are well-known for their great diversity and abundance in modern natural environments.They also are believed to pro-vide critical links among higher organisms and their associated environments.However,the low diversity of morphological fea-tures and structures of ancient microbes preserved in sediments and rocks make them difficult to identify and classify.This diffi-culty greatly hinders the investigation of geomicrobes throughout Earth history.Thus,most previous paleontological studies have focused on faunal and floral fossils.Here,geomicrobial functional groups(GFGs),or a collection of microbes featured in specific ecological,physiological or biogeochemical functions,are suggested to provide a way to overcome the difficulties of ancient mi-crobe investigations.GFGs are known for their great diversity in ecological,physiological and biogeochemical functions.In addi-tion,GFGs may be preserved as the biogeochemical,mineralogical and sedimentological records in sediments and rocks.We reviewed the functions,origins and identification diagnostics of some important GFGs involved in the elemental cycles of carbon,sulfur,nitrogen and iron.GFGs were further discussed with respect to their significant impacts on paleoclimate,sulfur chemistry of ancient seawater,nutritional status of geological environments,and the deposition of Precambrian banded iron formations. | XIE ShuCheng YANG Huan LUO GenMing HUANG XianYu LIU Deng WANG YongBiao GONG YiMing XU Rana | 2012 | Chinese Science Bulletin2012，57，1： | 11 |
| 4 | The altitude effect of ^(18)δO in precipitation and river water in the Southern Himalayas显示文摘The lapse rate of water isotopes is used in the study of the hydrologic cycle as well as in the estimation of uplift of the Tibetan Plateau.The greater elevation contrast in the Southern Himalayas allows for a detailed discussion about this lapse rate.We analyze variations of 18δO in precipitation and river water between 1320 m and 6700 m elevations in the Southern Himalayas,and calculate the specific lapse rate of water 18δO.The results show that the multi-year average lapse rate in precipitation over this region is 0.15‰/100 m.The one-year average lapse rate is 0.17‰/100 m from three sites along the Southern Himalayas.The two results agree,but are much lower than the global average of 0.28‰/100 m.This work also shows that there is a difference in precipitation 18δO lapse rate between the monsoon and non-monsoon seasons.The calculated precipitation lapse rate is much lower than that in surface water. | WEN Rong TIAN LiDe WENG YongBiao LIU ZhongFang ZHAO ZhongPing | 2012 | Chinese Science Bulletin2012，57，14： | 11 |
| 5 | The discovery of early Permian reef belt in east Kunlun and its significance显示文摘The early permian reef belt is distributed in the southern side of eastern Kunlun, north area of Qinghai-Tibet Plateau. The core-reef facies of the reef extends from Tuosuo Lake to Huashixia. Lots of reef breccia was found at the southern slope of the core-reef belt, and to the north of the reef belt there is back-reef limestone. Cacisponges, hydrozoa, bryozoa, Tabulozoa, Tubiphytes and red algae are the main frame-building organisms. Archaeolithoporella, laminated blue-green algaes, Tabulozoa and Tubiphytes played a role of binding or encrustating. There are many kinds of epibiont in the reef, including brachiopod, gasteropod, foraminifera, echinoderm and simple coral. The type and the characteristics of the reef-building organisms in eastern Kunlun and Animaqing are basically the same as those in the south of | Wang Yongbiao Zhang Kexing Gong Yiming Zhang Zhi Luo Mansheng | 1998 | Chinese Science Bulletin1998，43，11： | 10 |
| 6 | The fluctuating environment associated with the episodic biotic crisis during the Permo/Triassic transition:Evidence from microbial biomarkers in Changxing,Zhejiang Province显示文摘The environmental conditions and the biotic crisis during the Permo-Triassic (Tr/P) transition received increasing attention in the past decades. Presented herein are the molecular fossil records of cyano-bacteria and green sulfur bacteria,the base of the marine ecosystem,to highlight the episodic nature of both the environment and the biotic crisis during this critical period. At least two episodes of cyano-bacterial expansion are documented by 2-methylhopanes ranging from C28 to C32 in carbon number,indicative of the instable marine ecosystem and the fluctuant aquatic nutrients. Meanwhile,the index of 2-alkyl-1,3,4-trimethylbenzenes (biomarkers of green sulfur bacteria) and the ratio of pristane to phy-tane (Pr/Ph) witness the fluctuation of sedimentary environmental redox conditions. The above mo-lecular evidence suggests the occurrence of highly fluctuating environmental conditions during the Tr/P transition,which is consistent with,and probably the cause of,the multi-phased biotic crisis and the prolonged faunal recovery. | HUANG XianYu JIAO Dan LU LiQiang XIE ShuCheng HUANG JunHua WANG YongBiao YIN HongFu WANG HongMei ZHANG KeXin LAI XuLong | 2007 | Science China Earth Sciences2007，50，7： | 10 |
| 7 | Geobiological processes of the formation of lacustrine source rock in Paleogene显示文摘Gypsum-salt rocks and coccolith calcareous shale are widely deposited in the lower part of the Paleogene Shahejie Formation in the Dongying Sag,Shandong Province.The gypsum-salt rock is believed to be formed during the earlier deposition in salt lake,while the overlying coccolith shale in saline lake with relatively low salinity.By comparing the lake environment and lacustrine microbial communities between ancient and recent lakes,cyanobacteria are regarded as the main representative of productivity during the formation of gypsum-salt strata series,with the annual productivity of 1500-2000 gC m-2 yr-1.Based on the research of ultramicrofossils in the calcareous shale,coccolith is considered as the main contributor to the productivity during the formation of calcareous shale.On the basis of statistic data of sedimentary rates,shale laminations,and coccolith fossils in each lamination,the quantitative value of productivity is calculated,with the annual productivity of 2250-3810gC m-2 yr-1(averagely 3120 gC m-2 yr-1).Statistic data of large amount of pyrite framboids indicate that the lower water column was persistently in sulfidic or anoxic conditions during the deposition of gypsum-salt strata series,but it changed to be dysoxic when the coccolith calcareous shale was deposited.Both of these water conditions are favorable for the preservation of organic matter.It is estimated that the organic carbon burial efficiency of the Lower Paleogene salt lakes and saline lakes of Dongying Depression is about 10%-15%,which is calculated and analyzed using the multi-parameter geobiological model. | LI GuoShan WANG YongBiao LU ZongSheng LIAO Wei SONG GuoQi WANG XueJun XU XingYou | 2014 | Science China Earth Sciences2014，57，5： | 10 |
| 8 | Analysis of genetic architecture and favorable allele usage of agronomic traits in a large collection of Chinese rice accessions显示文摘Genotyping and phenotyping large natural populations provide opportunities for population genomic analysis and genome-wide association studies(GWAS). Several rice populations have been re-sequenced in the past decade;however, many major Chinese rice cultivars were not included in these studies. Here, we report large-scale genomic and phenotypic datasets for a collection mainly comprised of 1,275 rice accessions of widely planted cultivars and parental hybrid rice lines from China. The population was divided into three indica/Xian and three japonica/Geng phylogenetic subgroups that correlate strongly with their geographic or breeding origins. We acquired a total of 146 phenotypic datasets for 29 agronomic traits under multi-environments for different subpopulations. With GWAS, we identified a total of 143 significant association loci, including three newly identified candidate genes or alleles that control heading date or amylose content. Our genotypic analysis of agronomically important genes in the population revealed that many favorable alleles are underused in elite accessions, suggesting they may be used to provide improvements in future breeding efforts. Our study provides useful resources for rice genetics research and breeding. | Xiuxiu Li Zhuo Chen Guomin Zhang Hongwei Lu Peng Qin Ming Qi Ying Yu Bingke Jiao Xianfeng Zhao Qiang Gao Hao Wang Yunyu Wu Juntao Ma Liyan Zhang Yongli Wang Lingwei Deng Shanguo Yao Zhukuang Cheng Diqiu Yu Lihuang Zhu Yongbiao Xue Chengcai Chu Aihong Li Shigui Li Chengzhi Liang | 2020 | Science China(Life Sciences)2020，63，11： | 8 |
| 9 | Effect of cooling rates on the dendritic morphology transition of Mg–6Gd alloy by in situ X-ray radiography显示文摘The effect of cooling rate on the transition of dendrite morphology of a Mg-6 Gd(wt%) alloy was semiquantitatively analyzed under a constant temperature gradient by using synchrotron X-ray radiographic technique. Results show that equiaxed dendrites, including exotic 'butterfly-shaped' dendrite morphology, dominate at high cooling rate(>1 K/s). When the cooling rate decreases in the range of 0.5–1 K/s, the equiaxed-to-columnar transition takes place, and solute segregates at the center of two long dendrite arms(LDA) of the 'butterfly-shaped' dendrite. When the cooling rate is lower than 0.3 K/s, directional solidification occurs and the columnar dendritic growth direction gradually rotates from the crystalline axis to the thermal gradient direction with an increase in cooling rate. Meanwhile, interface moves faster but the dendrite arm spacing decreases. Floating, collision and rotation of dendrites under convection were also studied in this work. | Yongbiao Wang Liming Peng Yanzhou Ji Xiaoxing Cheng Cunlong Wang Yujuan Wu Yanan Fu Long-Qing Chen | 2018 | Journal of Materials Science & Technology2018，34，7： | 8 |
| 10 | Middle Permian palaeobiogeography study in East Kunlun,A'nyêmaqên and Bayan Har显示文摘Three regions can easily be identified in the study area according to the Middle Permian palaeobiogeographic distribution of biota, they are the southern slope of East Kunlun, A’nyêmaqên and Bayan Har. Biotic constitution and ecology in the southern slope of East Kunlun and Bayan Har are very similar. Both the diversity and abundance of organisms in these two areas are very high and reefs are widely developed. However, biotic diversity and abundance in A’nyêmaqên which is between the above two areas are obviously low. Differentiation of palaeo- biogeographic distribution in these areas should be due to the baring of A’nyêmaqên ocean in the time of Middle Permian. Middle Permian radiolarian chert and thick abyssal red ooze are widely spread in A’nyêmaqên, implying that the A’nyêmaqên ocean had a great scale in size. Vast scale of deep ocean basin became an impassable gulf for some of the benthos, and as a result, only part of the organisms could have the chance to get to the isolated islands situated in ocean basin. Small living space and hard conditions in the islands further limited the abundance and diversity of biota. Tectonic background reflected by the geochemical study of basalt in the three areas is coupling well enough with the palaeobiogeographic division. | WANG Yongbiao YANG Hao | 2004 | Science China Earth Sciences2004，47，12： | 7 |
| 11 | Identification of a Ubiquitin-Binding Structure in the S-Locus F-Box Protein Controlling S-RNase-Based Self-Incompatibility显示文摘在 flowering 植物,自我障碍(SI ) 作为重要 intraspecific 服务繁殖障碍支持快。在从 Solanaceae, Plantaginaceae 和 Rosaceae, S-RNase 和 SLF (S 地点 F 盒子) 蛋白质的种类被显示了分别地控制 SI 的女、男的特性。然而,很少除了它的保存 F 盒子领域对 SLF 蛋白质的结构特征被知道。这里,我们证明 SLF C 终端区域拥有结构在 SLF 蛋白质家庭之中保存了的一个新奇 ubiquitin 有约束力的领域(UBD ) 。由使用 Nicotiana benthamiana 的一个 ex vivo 系统,我们发现 UBD 调停由 ubiquitin–proteasome 小径的 SLF 蛋白质周转。而且,我们检测了 SLF 蛋白质直接涉及 S-RNase 降级。一起拿,我们的结果提供新奇卓见进 SLF 结构并且在 S-RNase-based 自我障碍加亮 SLF 蛋白质稳定性和降级的一个潜在的角色。 | Guang Chen BinZhang Lijing Liu Qun Li Yu'e Zhang Qi Xie Yongbiao Xue | 2012 | Journal of Genetics and Genomics2012，39，2： | 7 |
| 12 | OsGRAS19 May Be a Novel Component Involved in the Brassinosteroid Signaling Pathway in Rice显示文摘 | LishengChen Guosheng Xiong Xia Cui Meixian Yan Ting Xu Qian Qian Yongbiao Xue Jiayang Li Yonghong Wang | 2013 | Molecular Plant2013，6，3： | 6 |
| 13 | Isolation of candidate R disease resistance genes from rice显示文摘Using a polymerase chain reaction (PCR) based method six distinct candidate disease resistant gene (R) homologs from rice have been isolated. The rice sequences are organized into two phylogenetic groups with contrasting genomic organization patterns. The first group, represented by a single sequence, Osh359-1, is more similar to non-rice R sequences than to rice ones and has a simple genomic organization. The second group, represented by Osh359-3, contains the remaining five rice sequences. Osh359-3 consists of a multi-gene family. The members of Osh359-3 family are further found to be clustered together in the genome. | Yongbiao Xue Dingzhong Tang Yansheng Zhang Weiming Li | 1998 | Chinese Science Bulletin1998，43，6： | 6 |
| 14 | Interactive effects of understory removal and fertilization on soil respiration in subtropical Eucalyptus plantations显示文摘Aims It has been well recognized that understory vegetation plays an important role in driving forest ecosystem processes and functioning.In subtropical plantation forests,understory removal and fertiliza-tion have been widely applied;however,our understanding on how understory removal affects soil respiration and how the process is regulated by fertilization is limited.Here,we conducted an under-story removal experiment combined with fertilization to evaluate the effects of the two forest management practices and their inter-actions on soil respiration in subtropical forest in southern China.Methods The study was conducted in a split-plot design with fertilization as the whole-plot factor,understory removal as the subplot factor and block as the random factor in subtropical Eucalyptus plantations.In total,there were four treatments:control with unfertilized and intact understory(CK),understory removal but without fertilization(UR),with fertilization but without understory removal(FT)and with fertilization+understory removal(FT+UR).Eucalyptus above-and belowground biomass increment,fine root biomass,soil tempera-ture,soil moisture and soil respiration were measured in the present study.understory respiration(Ru)was quantified in different ways:Ru=RCK−Ru or Ru=RFT−R(FT+u);fertilization increased soil respiration(RFI)was also quantified in different ways:RFI=RFT−RCK or RFI=R(FT+u)−Ru.Important Findingsover a 2-year experiment,our data indicate that understory removal significantly decreased soil respiration,while fertilization increased soil respiration.understory removal decreased soil respiration by 28.8%under fertilization,but only 15.2%without fertilization.Fertilization significantly increased soil respiration by 23.6%with the presence of understory vegetation,and only increased by 3.7%when understory was removed,indicating that fertilization increased soil respiration mainly by increasing the contribution of the understory.our study advances our understanding of the interactive effects of understory management and fertilization on soil respiration in subtropical plantations. | Songze Wan Chenlu Zhang Yuanqi Chen Jie Zhao Xiaolin Zhu Jianping Wu Lixia Zhou Yongbiao Lin Zhanfeng Liu Shenglei Fu | 2015 | Journal of Plant Ecology2015，8，3： | 6 |
| 15 | Editorial显示文摘Journal of Genetics and Genomics(JGG) is published by the Genetics Society of China and covers major fields of genetics and genomics.In recent years,JGG has become a quality societal journal.Annual editorial board meetings have severed the journal well in terms of promoting and enhancing its quality.On December 18,2011,the annual JGG editorial board meeting was held in Kunming,China and thirty editorial board members attended this meeting. | Yongbiao Xue Editor-in-Chief | 2012 | Journal of Genetics and Genomics2012，39，1： | 5 |
| 16 | Research progress on solidification structure of alloys by synchrotron X-ray radiography: A review显示文摘The synchrotron radiation technology has recently emerged as a powerful tool to characterize the real-time microstructure evolution during solidification of alloys.Compared with other methods,the synchrotron radiation technology,along with its unique advantages of strong brightness,high energy,excellent resolution,and good monochromaticity,allows for capturing the dendrite evolution behavior of alloys in real time and can be dynamically coordinated with high-resolution CCD(Charge-coupled Device)imaging systems.This paper briefly reviews the recent advances in developing synchrotron radiation for solidification of alloys with low,medium,and high melting points,and under the external electric,magnetic,and ultrasonic fields.Furthermore,a series of microstructural features and behaviors such as dendrite morphology,growth orientation,dendrite fracture,and rotation are described in detail.Finally,the development trends and application prospects of synchrotron radiation technology in alloy solidification are forecasted. | Yongbiao Wang Sensen Jia Mingguang Wei Liming Peng Yujuan Wu Xintian Liu | 2020 | Journal of Magnesium and Alloys2020，8，2： | 5 |
| 17 | Levels and distribution of polychlorinated biphenyls in the atmosphere close to Chinese Great Wall Station, Antarctica: Results from XAD-resin passive air sampling显示文摘Antarctica is an important research region for assessing persistence and long-range atmospheric transport (LRAT) of persistent organic pollutants (POPs). In this study, XAD-resin passive air sampling was conducted near the Chinese Great Wall Station, Antarctica, during a one-year sampling period in 2009-2010. The air concentrations of polychlorinated biphenyls (PCBs) were at a very low level, with total PCBs in the range of 26.74-45.08 pg m 3. PCB profiles were dominated by tetra-PCBs, tri-PCBs and di-PCBs, indicating LRAT was responsible for the pollutants in the Antarctic atmosphere. The sampling site near the Chinese Great Wall Station did not show higher PCB levels than the other sites, suggesting that PCB sources associated with the Great Wall Station were negligible. PCB-11 is a non-Aroclor congener, which has specific sources compared to other Aroclor PCB congeners. PCB-11 was observed in all air samples, with an average concentration of 1.22 pg m 3. To our knowledge, this study is the first investigation of PCB levels and distribution in the atmosphere around the Chinese Great Wall Station, Antarctica. | LI YingMing GENG DaWei HU YongBiao WANG Pu ZHANG QingHua JIANG GuiBin | 2012 | Chinese Science Bulletin2012，57，13： | 5 |
| 18 | PcTGD,a highly expressed gene in stem,is related to water stress in reed (Phragmites communis Trin.)显示文摘To compare differential gene expression among three ecotypes of reed (Phragmites communis Trin.), dune reed (DR), heavy-salt meadow reed (HSR) and light-salt meadow reed (LSR), mRNA transcripts were displayed by cDNA-AFLP (amplified fragment length polymorphisms). The result revealed that a relatively small number of genes are likely involved in adaptations of DR and HSR to stresses. A full-length cDNA encoding dTDP-D-glucose dehydratase gene (PcTGD) was subsequently cloned from DR. Northern blot analysis showed that it is highly expressed in stem as well as rhizoma of the three ecotypes. However, its expression in DR stem was much higher than that of the other two ecotypes. After the removal of water stress, the expression of PcTGD was significantly reduced, suggesting that it possibly plays a role in adaptation of DR to water stress through an osmotic regulation mechanism. | CHENG Youfa PU Tongliang XUE Yongbiao ZHANG Chenglie | 2001 | Chinese Science Bulletin2001，46，10： | 4 |
| 19 | The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR显示文摘On January 22,2020,China National Center for Bioinformation(CNCB)released the 2019 Novel Coronavirus Resource(2019nCoVR),an open-access information resource for the severe acute respiratory syndrome coronavirus 2(SARS-CoV-2).2019nCoVR features a comprehensive integration of sequence and clinical information for all publicly available SARS-CoV-2 isolates,which are manually curated with value-added annotations and quality evaluated by an automated in-house pipeline.Of particular note,2019nCoVR offers systematic analyses to generate a dynamic landscape of SARS-CoV-2 genomic variations at a global scale.It provides all identified variants and their detailed statistics for each virus isolate,and congregates the quality score,functional annotation,and population frequency for each variant.Spatiotemporal change for each variant can be visualized and historical viral haplotype network maps for the course of the outbreak are also generated based on all complete and high-quality genomes available.Moreover,2019nCoVR provides a full collection of SARS-CoV-2 relevant literature on the coronavirus disease 2019(COVID-19),including published papers from PubMed as well as preprints from services such as bioRxiv and medRxiv through Europe PMC.Furthermore,by linking with relevant databases in CNCB,2019nCoVR offers data submission services for raw sequence reads and assembled genomes,and data sharing with NCBI.Collectively,SARS-CoV-2 is updated daily to collect the latest information on genome sequences,variants,haplotypes,and literature for a timely reflection,making 2019nCoVR a valuable resource for the global research community.2019nCoVR is accessible at http://gffzzdbc7b6aaae734bdds5b9f6k9nv56x6u96.ffgz.tsg.suse.edu.cn/ncov/. | Shuhui Song Lina Ma Dong Zou Dongmei Tian Cuiping Li Junwei Zhu Meili Chen Anke Wang Yingke Ma Mengwei Li Xufei Teng Ying Cui Guangya Duan Mochen Zhang Tong Jin Chengmin Shi Zhenglin Du Yadong Zhang Chuandong Liu Rujiao Li Jingyao Zeng Lili Hao Shuai Jiang Hua Chen Dali Han Jingfa Xiao Zhang Zhang Wenming Zhao Yongbiao Xue Yiming Bao | 2020 | Genomics, Proteomics & Bioinformatics2020，18，6： | 4 |
| 20 | Organizational Innovation of Apical Actin Filaments Drives Rapid Pollen Tube Growth and Turning显示文摘极化的尖端生长是在许多优核质的一个基本细胞的过程。在这研究,我们检验了在 Arabidopsis 的在花粉尖端生长期间的到泡运输的肌动朊细胞骨架和它的关系的动态重构。我们发现从顶端的膜发源的肌动朊细丝形成由排列肌动朊与不同分布在外皮和内部细胞质的细丝绑的纵组成的专业化结构。用在联合与的基于肌动朊的药理学处理和基因异种捆牢(在 photobleaching 以后的荧光恢复) 在花粉试管的生长领域以内设想泡的运输的技术,我们证明外皮的肌动朊细丝便于尖端病房泡运输。我们也发现内部顶端的肌动朊细丝阻止泡的向后的运动,因此保证足够的泡在花粉试管尖端积累支持花粉试管的快速的生长。外皮、内部的顶端的肌动朊细丝的组合效果完美地在花粉试管尖端解释转换 V 锥形的泡分发模式的产生。当花粉试管转弯时,在面对的方面的顶端的肌动朊细丝经历 depolymerization 和聚合到使适应向新生长方向的顶端的肌动朊结构。重构的这肌动朊先于泡累积并且在试管形态学变化。因此,我们的学习在快速、方向性的花粉试管生长期间提供新卓见进在肌动朊动力学和泡运输之间的功能的关系。 | Xiaolu Qu Ruihui Zhang Meng Zhang Min Diao Yongbiao Xue Shanjin Huang | 2017 | Molecular Plant2017，10，7： | 3 |
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