|
|
|
题名
|
作者
|
年代
|
出处
|
被引量
|
| 1 | Complete mitochondrial genome of the Japanese snapping shrimp Alpheus japonicus(Crustacea:Decapoda:Caridea):Gene rearrangement and phylogeny within Caridea显示文摘The complete sequence of the mitochondrial genome of the Japanese snapping shrimp Alpheus japonicus Miers(Crustacea:Decapoda:Caridea) is presented here.A comparative analysis based on the currently available mitochondrial genomic data revealed many previously unknown characteristics of the mitochondrial genomes of caridean shrimps.The A.japonicus mitochondrial genome is 16487 bp long and contains the typical set of 37 metazoan genes.The gene arrangements in the mitochondrial genomes of four previously studied carideans(Macrobrachium rosenbergii,M.nipponense,M.lanchesteri and Halocaridina rubra) were found to be identical to the pancrustacean ground pattern;thus,it was considered that gene rearrangements probably did not occur in the suborder Caridea.In the present study,a translocation of the trnE gene involving inversion was found in Alpheus mitochondrial genomes.This phenomenon has not been reported in any other crustacean mitochondrial genome that has been studied so far;however,the translocation of one transfer RNA gene(trnP or trnT) was reported in the mitochondrial genome of Exopalaemon carinicauda.When the ratios of the nonsynonymous and synonymous substitutions rates(Ka/Ks) for the 13 protein coding genes from two Alpheus species(A.japonicus and A.distinguendus) and three Macrobrachium species(M.rosenbergii,M.nipponense,M.lanchesteri) were calculated,the Ka/Ks values for all the protein coding genes in Alpheus and Macrobrachium mitochondrial genomes were found to be less than 1(between 0.0048 and 0.2057),indicating that a strong purification selection had occurred.The phylogenetic tree that was constructed based on the mitochondrial protein coding genes in the genomes of nine related species indicated that Palaemonidae and Alpheidae formed a monophyly and shared a statistically significant relationship,(Palaemonidae+Alpheidae)+Atyidae,at the family level. | SHEN Xin LI Xiao SHA ZhongLi YAN BinLun XU QiHua | 2012 | Science China(Life Sciences)2012，55，7： | 3 |
| 2 | Highly integrated sulfur cathodes with strong sulfur/high-strength binder interactions enabling durable high-loading lithium-sulfur batteries显示文摘The development of high-sulfur-loading Li-S batteries is a key prerequisite for their commercial applications.This requires to surmount the huge polarization,severe polysulfide shuttling and drastic volume change caused by electrode thickening.High-strength polar binders are ideal for constructing robust and long-life high-loading sulfur cathodes but show very weak interfacial interaction with non-polar sulfur materials.To address this issue,this work devises a highly integrated sulfur@polydopamine/highstrength binder composite cathodes,targeting long-lasting and high-sulfur-loading Li-S batteries.The super-adhesion polydopamine(PD)can form a uniform nano-coating over the graphene/sulfur(G-S)surface and provide strong affinity to the cross-linked polyacrylamide(c-PAM)binder,thus tightly integrating sulfur with the binder network and greatly boosting the overall mechanical strength/conductivity of the electrode.Moreover,the PD coating and c-PAM binder rich in polar groups can form two effective blockades against the effusion of soluble polysulfides.As such,the 4.5 mg cm−2 sulfur-loaded G-S@PD-c-PAM cathode achieves a capacity of 480 mAh g−1 after 300 cycles at 1 C,while maintaining a capacity of 396 mAh g−1 after 50 cycles at 0.2 C when the sulfur loading rises to 9.1 mg cm−2.This work provides a system-wide concept for constructing high-loading sulfur cathodes through integrated structural design. | Arif Rashid Xingyu Zhu Gulian Wang Chengzhi Ke Sha Li Pengfei Sun Zhongli Hu Qiaobao Zhang Li Zhang | 2020 | Journal of Energy Chemistry2020，29，10： | 2 |
| 3 | Are Acila divaricata and Acila mirabilis One Species or Two Distinct Species? Evidence from COI Mitochondrial DNA显示文摘Acila divaricata(Hinds, 1843) and A. mirabilis(Adams and Reeve, 1850) are common benthic bivalves in China. A number of researchers have proposed that the latter species is a junior synonym of the former species. Because of morphological similarities, it is difficult to distinguish these two species based on visual examination only. For better understanding of their taxonomy, the mitochondrial COI gene fragments of five individuals of A. divaricata from the East China Sea and six individuals of A. mirabilis from the Yellow Sea were sequenced in this study. The phylogenetic relationships of the obtained COI sequences, together with nineteen sequences of three species of the genus Nucula, were analyzed. The pairwise intra- and inter-specific distances for the COI sequences ranged from 0.002 to 0.017 and from 0.128 to 0.134, respectively, and no overlap was found. Phylogenetically, A. divaricata and A. mirabilis form distinct clades and cluster into a sister to all other Nucula species. The results indicated that A. divaricata and A. mirabilis are two distinct species. The differences in the morphology and distribution between the two species were briefly discussed. | ZHANG Junlong SHI Huafeng XU Fengshan SHA Zhongli | 2014 | Journal of Ocean University of China2014，13，2： | 2 |
| 4 | Positioning taxonomic research for the future显示文摘Why do taxonomists matter? The work of taxonomists is often understated if not completely misunderstood. Without taxonomists, organisms cannot be accurately identified, neither can these organisms be given universally accepted names, and reliably positioned in the phylogenetic tree of life. Thanks to the work of taxonomists over the last 269 years since Carl Linnaeus established the binomial system, we can now measure the health and wealth of our biodiversity in a refined, science-based inventory prescribed by stringent nomenclatural rules. | Deyuan Hong Wenying Zhuang Min Zhu Keping Ma Xiaoquan Wang Dawei Huang Yalin Zhang Guodong Ren Wenjun Bu Wanzhi Cai Dong Ren Ding Yang Aiping Liang Fengyan Bai Runzhi Zhang Fumin Lei Shuqiang Li Hongzhi Kong Lei Cai Yucheng Dai Chaodong Zhu Qisen Yang Jun Chen Zhongli Sha Jianping Jiang Jing Che Donghui Wu Jiatang Li Qiang Wang Xinli Wei Ming Bai Xingyue Liu Xuexin Chen Gexia Qiao | 2022 | Zoological Systematics2022，47，3： | 2 |
| 5 | A joint call for actions to advance taxonomy in China显示文摘Taxonomy plays an important role in understanding the origin, evolution, and ecological functionality of biodiversity. There are large number of unknown species yet to be described by taxonomists, which together with their ecosystem services cannot be effectively protected prior to description. Despite this, taxonomy has been increasingly underrated insufficient funds and permanent positions to retain young talents. Further, the impact factordriven evaluation systems in China exacerbate this downward trend, so alternative evaluation metrics are urgently necessary. When the current generation of outstanding taxonomists retires,there will be too few remaining taxonomists left to train the next generation. In light of these challenges, all co-authors worked together on this paper to analyze the current situation of taxonomy and put out a joint call for immediate actions to advance taxonomy in China. | Chaodong Zhu Arong Luo Ming Bai Michael COrr Zhonge Hou Siqin Ge Jun Chen Yibo Hu Xuming Zhou Gexia Qiao Hongzhi Kong Limin Lu Xiaohua Jin Lei Cai Xinli Wei Ruilin Zhao Wei Miao Qingfeng Wang Zhongli Sha Qiang Lin Meng Qu Jianping Jiang Jiatang Li Jing Che Xuelong Jiang Xiaoyong Chen Lianming Gao Zongxin Ren Chunlei Xiang Shixiao Luo Donghui Wu Dong Liu Yanqiong Peng Tao Su Chenyang Cai Tianqi Zhu Wanzhi Cai Xingyue Liu Hu Li Huaijun Xue Zhen Ye Xuexin Chen Pu Tang Shujun Wei Hong Pang Qiang Xie Feng Zhang Feng Zhang Xianjin Peng Aibing Zhang Taiping Gao Changfa Zhou Chen Shao Libin Ma Zhaoming Wei Yunxia Luan Ziwei Yin Wu Dai Cong Wei Xiaolei Huang Jingxian Liu Xiangsheng Chen Tianci Yi Zhisheng Zhang Zhulidezi Aishan Qin Li Hongying Hu | 2022 | Zoological Systematics2022，47，3： | 1 |
| 6 | Molecular phylogeny of the genus Clibanarius(Decapoda: Anomura: Diogenidae) based on mitochondrial and nuclear DNA sequences显示文摘Clibanarius , a genus of hermit crabs, is one of the most diverse genera within Diogenidae. However, studies on the phylogeny within Clibanarius is very limited. We reconstruct the molecular phylogeny of the genus Clibanarius based on two mitochondrial (16S rRNA and COI) and two nuclear protein-coding (NaK and PEPCK) genes using a multigene phylogenetic approach. Eleven selected Clibanarius species from the Indo-West Pacifi c are analyzed and the Bayesian and maximum likelihood analyses produced identical results in topology. Results suggest that C . rutilus and C . infraspinatus are more closely related to each other than to C . snelliusi , and C . striolatus shows a close relationship to C . longitarsus . The close association of C . merguiensis with C . englaucus and C . humilis is strongly supported by the divergence of C . virescens from them. Our phylogenetic results contradict the morphological classifi cation scheme proposed for Clibanarius and indicate that the relative length of dactyls and propodi is not phylogenetically signifi cant in Clibanarius . In addition, we speculate that the morphological characteristic of the median cleft of the telson might be phylogenetically important for Clibanarius . | LI Wenjie CHENG Jiao HUI Min SHA Zhongli | 2019 | Journal of Oceanology and Limnology2019，37，5： | 1 |
| 7 | Five new records of Xanthidae(Crustacea:Brachyura)from Hainan Island,China显示文摘Five new records of the family Xanthidae are reported from China:Hypocolpus haanii Rathbun,1909,Neoliomera variolosa(A.Milne-Edwards,1873),Leptodius australis Ward,1936,L.davaoensis Ward,1941,and Xanthias joanneae Mendoza,2013.The specimens were collected from Hainan Island and deposited in the Marine Biological Museum,Chinese Academy of Sciences.Diagnosis based on observation,photographs,line drawings,and some taxonomic discussions are provided. | Ziming YUAN Zhongli SHA Wei JIANG | 2022 | Journal of Oceanology and Limnology2022，40，1： | 0 |
| 8 | Eyes of diff ering colors in Alvinocaris longirostris from deep-sea chemosynthetic ecosystems: genetic and molecular evidence of its formation mechanism显示文摘Coloration is an important phenotypic trait for multiple adaptive functions.It is interesting to fi nd white-eye(AW)and orange-eye(AO)phenotypes in the shrimp Alvinocaris longirostris inhabiting the deep-sea cold seep and hydrothermal vent areas of the northwestern Pacifi c.By comparative transcriptome analyses,1491 diff erentially expressed genes(DEGs)were identified between AW and AO.Among them,many DEGs were associated with immunity,antioxidation,and detoxifi cation.Two signifi cant enzyme encoding genes,xanthine dehydrogenase,and tryptophan oxidase involved in pigment biosynthesis pathways were up-regulated in AW and AO,respectively,which might be related to the diff erences of white and orange eye phenotypes.Moreover,single nucleotide polymorphism(SNP)calling detected that genotypes of 28 SNP distributing in 14 unigenes were completely diff erent between AW and AO.Particularly,there were three and two non-synonymous mutations in immune genes crustin Pm5 and antimicrobial peptide,respectively.Results indicate that the diff erence in eye color is probably resulted from immune response to variable micro-environmental stressors encountered in the dispersal process of the shrimps,such as symbiotic microbes,pathogens,and toxic substances,and might be genetically fi xed at last.The suggested pathway preliminarily explained the formation mechanism of diff erent eye phenotypes in Alvinocaridid shrimps,providing a basis for further study on adaptive evolution of eyes in deep-sea chemosynthetic faunas. | Qian XIN Min HUI Chaolun LI Zhongli SHA | 2021 | Journal of Oceanology and Limnology2021，39，1： | 0 |
| 9 | A Preliminary Phylogenetic Analysis of Luidia (Paxillosida: Luidiidae) from Chinese Waters with Cytochrome Oxidase Subunit I (COI) Sequences显示文摘Luidia Forbes(Paxillosida: Luidiidae) are common soft bottom sea stars with 49 described species.Because of substantial morphological diversity,the taxonomy of the genus is complex and hasn't been resolved definitely.In order to resolve general taxonomic issues,and determine species boundaries and phylogenetic relationships within the genus Luidia,the sequences of cytochrome oxidase subunit Ι(COΙ) gene from 24 specimens of Luidia,belonging to eight taxa in Chinese waters,were studied.Three sequences of two species in genus Luidia from GenBank were used to analyze the phylogenetic relationships.The molecular phylogeny exhibited three main clades,each with strong bootstrap support: Clade A including Luidia quinaria from the Sea of Japan;Clade B including seven nominal species(L.quinaria von Martens,L.yesoensis Goto,L.changi Liu,Liao and Li,L.orientalis Fisher,L.avicularia Fisher,L.longispina Sladen and L.hardwicki Gray) from Chinese waters;and Clade C including L.maculata Müller & Troschel from Chinese waters.Our molecular phylogeny results support the morphological Quinaria-Group and Alternata-Group assigned by D derlein.Seven nominal species we sampled do not exhibit genetic distances that are large enough to recognize them as separate species.Cryptic species may exist in ‘Luidia quinaria' from the Yellow Sea and the Sea of Japan.Meaningful morphological characters need further investigation in Luidia. | XIAO Ning LIU Ruiyu YUAN Shuai SHA Zhongli | 2013 | Journal of Ocean University of China2013，12，3： | 0 |
| 10 | The Taxonomic Status of Japanese Threadfin Bream Nemipterus japonicus(Bloch, 1791)(Perciformes: Nemipteridae) with a Redescription of this Species from the South China Sea Based on Morphology and DNA Barcodes显示文摘Because of its importance as a food source, Nemipterus japonicus(Bloch, 1791)(Nemipteridae) or Japanese threadfin bream is the best studied of these taxa, and numerous investigations have examined its fisheries, its biology and biochemistry. Despite such intensive work, the taxonomic status of N. japonicus has never been seriously questioned and it is regarded as a common species, widely distributed throughout the Indo-Western Pacific Ocean. In fact, Bloch's description of the type specimen of N. japonicus has ambiguous collection data and lacks a designation for the type locality, though it is probably Java. In this paper, DNA barcode results based on COI gene support the existence of two geographically separated lineages of the Japanese threadfin bream, both being an Indian Ocean and western Pacific lineage, with 2.7% sequence divergence, and the results indicate a possible existing of some cryptic species. The two lineages also possess a diagnostic difference in their belly color, with specimens in the South China Sea having a silver belly, while those from the Indian Ocean isolate specimen have a yellow coloration. Based upon new collections from the South China Sea, this species from the western Pacific is morphologically redescribed and its details of DNA barcode diversity are shown for the future investigations. | NING Ping SHA Zhongli Paul D. N. HEBERT Barry RUSSELL | 2015 | Journal of Ocean University of China2015，14，1： | 0 |
| 11 | New record of the feather star Palaeocomatella hiwia(Echinodermata:Crinoidea:Comatulida)from Zhenbei Seamount in South China Sea:new insights into the taxonomic position of Palaeocomatella显示文摘One specimen belonging to the family Comatellinae was collected from the Zhenbei Seamount(332.5–478.2 m)in the South China Sea in July 2022.Based on the morphological characters,the specimen was identified as Palaeocomatella hiwia McKnight,1977.It is first recorded from China Sea and redescribed in detail.This specimen differs from the original description from New Zealand for never showing syzygy at br4+5 or br5+6 on interior and br1+2 on exterior arms.However,it is much conform to the redescription to specimens from Indonesia,with only differences in position of the second syzygy and distalmost pinnule comb.Specimen is deposited in the Institute of Oceanology,Chinese Academy of Sciences.Phylogenetic analyses based on the mitochondrial c oxidase subunit I(COI)and 16S rRNA genes indicated that P.hiwia was nested within the tribe Phanogeniini and clustered with Aphanocomaster pulcher.Furthermore,P.hiwia showed same morphological features in terms of mouth placement,comb location,and number of comb teeth rows as other genera of Phanogeniini.Therefore,we suggest that the genus Palaeocomatella should be put in the tribe Phanogeniini. | Shao’e SUN Zijie MEI Zhongli SHA Jing WANG Nansheng CHEN | 2024 | Journal of Oceanology and Limnology2024，42，1： | 0 |
| 12 | Mitochondrial phylogenomics reveal the origin and adaptive evolution of the deep-sea caridean shrimps(Decapoda:Caridea)显示文摘The deep-sea is considered as the most extensive ecosystem on the Earth.It is meaningful for elucidating the life origins by exploring the origin and adaptive genetic mechanisms of the large deepsea organisms.Caridean shrimps have colonized and successfully adapted to deep-sea environments.They provide an ideal model to analyze the origin and adaptive evolution of modern deep-sea fauna.Here,we conducted the phylogenetic analyses of mitocho ndrial genomes(mitogenomes)from carideans,including 11 newly sequences reported in this investigation to explore the habitat origins,divergence times,and adaptive evolution of deep-sea(seamounts and hydrothermal vents)caridean shrimps.The results showed that the species of deep-sea Caridea formed a monophyletic group.Phylogenetic analysis supported that the deepsea caridean shrimps may originated from shallow sea.The hydrothermal vents alvinocaridid shrimps and Lebbeus shinkaiae from Thoridae underwent a second range expansion from seamounts to vent ecosystems.Estimates of divergence time showed that the caridean shrimps invaded into deep-sea at 147.75 Ma.The divergence of most of the modern seamount and hydrothermal vent species are in the late Cretaceous/early Tertiary.This may associate with the geological events of the Western Pacific,the climate change,and the global deep-water anoxic/dysoxic events during this period.Twenty-two potentially important adaptive residues were detected in the deep-sea shrimp lineage,which were located in atp6,atp8,cox1,cox3,cytb,nad2,nad4 l,and nad5.This investigation adds our understanding of the evolutionary history of deep-sea caridean shrimps,and provides insights into the mitochondrial genetic basis of deep-sea adaptation in this group. | Shao’e SUN Zhongli SHA Yanrong WANG | 2021 | Journal of Oceanology and Limnology2021，39，5： | 0 |
| 13 | Complete mitochondrial genomes of two deep-sea pandalid shrimps,Heterocarpus ensifer and Bitias brevis:insights into the phylogenetic position of Pandalidae(Decapoda:Caridea)显示文摘The mitochondrial genome(mitogenome)analysis is a significant tool for investigating the evolutionary history of metazoan animals.The family Pandalidae is a diverse caridean group containing mainly deep-sea species.Until May 302019,only two complete mitogenomes are available in GenBank.Here we present the complete mitogenome sequences of two deep-sea pandalid shrimps,Heterocarpus ensifer and Bitias brevis through Illumina sequencing.The mitochondrial genomes were determined to be 15939 bp and 15891 bp long,and both consist of 13 protein-coding genes(PCGs),23 transfer-RNA genes(tRNAs),two ribosomal-RNA genes(rRNAs),and one control region.The nucleotide composition is biased toward adenine and thymine.Overall,the gene contents and arrangements are consistent with the pancrustacean ground pattern.The alignment of the control regions of four pandalids reveals a conserved sequence block(CSB)(104 bp in length,average GC%=29.47%and 69.23%similarity).A phylogenetic analysis based on 51 Caridea complete mitogenomes revealed that the deep-sea pandalid shrimps are situated an intermediate lineage,with a tendency to originated from those living in shallow sea area. | SUN Shao’e CHENG Jiao SUN Song SHA Zhongli | 2020 | Journal of Oceanology and Limnology2020，38，3： | 0 |
| 14 | Medaeops Guinot,1967(Brachyura,Xanthidae)from China seas,with the resurrection of Medaeops japonicus(Rathbun,1898)显示文摘The xanthid genus Medaeops Guinot,1967 currently contains seven species reported from the Indo-West Pacific region.However,only one species,Medaeops granulosus(Haswell,1882),has been recorded from China seas and was once thought to be widespread in the Indo-West Pacific region.In this study,two species of the Medaeops granulosus species-group were identified during the analysis on Medaeops crabs from China seas.Medaeops japonicus(Rathbun,1898),which had previously been considered a junior synonym of M.granulosus,is shown to be a distinct species that can be distinguished from M.granulosus by the lower first anterolateral tooth,the larger and concentrated granules on carapace dorsally,and the different shape of the male’s first gonopod.In addition,a new recorded species,Medaeops edwardsi Guinot,1967,was reported from China seas for the first time.A molecular analysis was conducted to determine the status of each species,and an updated key for species of the genus Medaeops was provided. | Ziming YUAN Wei JIANG Zhongli SHA | 2023 | Journal of Oceanology and Limnology2023，41，6： | 0 |
您所在的机构暂未开通此部分的功能，请联系管理员