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| 1 | The Sunway TaihuLight supercomputer: system and applications显示文摘The Sunway Taihu Light supercomputer is the world's first system with a peak performance greater than 100 PFlops. In this paper, we provide a detailed introduction to the Taihu Light system. In contrast with other existing heterogeneous supercomputers, which include both CPU processors and PCIe-connected many-core accelerators(NVIDIA GPU or Intel Xeon Phi), the computing power of Taihu Light is provided by a homegrown many-core SW26010 CPU that includes both the management processing elements(MPEs)and computing processing elements(CPEs) in one chip. With 260 processing elements in one CPU, a single SW26010 provides a peak performance of over three TFlops. To alleviate the memory bandwidth bottleneck in most applications, each CPE comes with a scratch pad memory, which serves as a user-controlled cache. To support the parallelization of programs on the new many-core architecture, in addition to the basic C/C++and Fortran compilers, the system provides a customized Sunway Open ACC tool that supports the Open ACC2.0 syntax. This paper also reports our preliminary efforts on developing and optimizing applications on the Taihu Light system, focusing on key application domains, such as earth system modeling, ocean surface wave modeling, atomistic simulation, and phase-field simulation. | Haohuan FU Junfeng LIAO Jinzhe YANG Lanning WANG Zhenya SONG Xiaomeng HUANG Chao YANG Wei XUE Fangfang LIU Fangli QIAO Wei ZHAO Xunqiang YIN Chaofeng HOU Chenglong ZHANG Wei GE Jian ZHANG Yangang WANG Chunbo ZHOU Guangwen YANG | 2016 | Science China(Information Sciences)2016，59，7： | 45 |
| 2 | A Filtering Approach Based on MMAE for a SINS/CNS Integrated Navigation System显示文摘This paper explores multiple model adaptive estimation(MMAE) method, and with it, proposes a novel filtering algorithm. The proposed algorithm is an improved Kalman filter— multiple model adaptive estimation unscented Kalman filter(MMAE-UKF) rather than conventional Kalman filter methods,like the extended Kalman filter(EKF) and the unscented Kalman filter(UKF). UKF is used as a subfilter to obtain the system state estimate in the MMAE method. Single model filter has poor adaptability with uncertain or unknown system parameters,which the improved filtering method can overcome. Meanwhile,this algorithm is used for integrated navigation system of strapdown inertial navigation system(SINS) and celestial navigation system(CNS) by a ballistic missile's motion. The simulation results indicate that the proposed filtering algorithm has better navigation precision, can achieve optimal estimation of system state, and can be more flexible at the cost of increased computational burden. | Fangfang Zhao Cuiqiao Chen Wei He Shuzhi Sam Ge | 2018 | IEEE/CAA Journal of Automatica Sinica2018，5，6： | 8 |
| 3 | Effect of diosmetin on airway remodeling in a murine model of chronic asthma显示文摘支气管的气喘,最普通的过敏疾病之一,被航线 hyperresponsiveness (AHR ) 描绘,发炎,并且改变。抗氧化剂黄酮 aglycone diosmetin 改善在胰腺炎的发炎,而是很少在气喘上对它的影响被知道。在这研究,长期的气喘上的 diosmetin 的效果在航线在与 ovalbumin (卵) 质问的 BALB/c 老鼠改变的调整上与一个重音被调查。diosmetin 显著地在气喘的老鼠的肺减轻了煽动性的细胞渗入,离脚玻璃杯或瓷杯细胞增生,和骨胶原免职并且显著地在这些动物减少了 AHR,这被发现。全部的房间的导致卵的增加和在 bronchoalveolar lavage 液体的嗜曙红血球计数被颠倒,并且在浆液的卵特定的免疫球蛋白 E 的水平被 diosmetin 管理稀释,暗示 diosmetin 的一项 anti-Th2 活动。而且, diosmetin 显著地压制了光滑的肌肉肌动朊 alpha 链的表示,显示航线上的 diosmetin 的有势力 anti-proliferative 效果光滑的肌肉房间(ASMC ) 。矩阵 metallopeptidase-9,转变生长 factor-1,和脉管的 endothelial 生长因素层次是也由 diosmetin 减轻了,建议航线改变的宽恕可能被归因于这些蛋白质的衰落。一起拿,我们的调查结果向 diosmetin 的新奇侧面提供了改变反的治疗学的好处,在在长期的气喘汇寄 ASMC 增长加亮 diosmetin 的一个新潜力。 | Ai Ge Yanan Liu Xiaoning Zeng Hui Kong Yuan Ma Jiaxiang Zhang Fangfang Bai Mao Huang | 2015 | Acta Biochimica et Biophysica Sinica2015，47，8： | 7 |
| 4 | Activin A maintains cerebral cortex neuronal survival and increases voltage-gated Na^+ neuronal current显示文摘Activin A,which was first described in 1986,has been shown to maintain hippocampal neuronal survival.Activin A increases intracellular free Ca2+ via L-type Ca2+ channels.Our previous study showed that activin A promotes neurite growth of dorsal root ganglia in embryonic chickens and inhibits nitric oxide secretion.The present study demonstrated for the first time that activin A could maintain cerebral cortex neuronal survival in vitro for a long period,and that activin A was shown to increase voltage-gated Na+ current(INa) in Neuro-2a cells,which was recorded by patch clamp technique.The present study revealed a novel mechanism for activin A,as well as the influence of activin A on neurons by regulating expressions of vasoactive intestine peptide and inducible nitric oxide synthase. | Jingyan Ge Yinan Wang Haiyan Liu Fangfang Chen Xueling Cui Zhonghui Liu | 2010 | Neural Regeneration Research2010，5，19： | 4 |
| 5 | Clinical observation of pemetrexed on advanced non-small-cell lung cancer显示文摘我们的学习的目的是观察病人们由 pemetrexed 治疗了的先进非小的房间肺癌症(NSCLC ) 的 50 个盒子的功效和毒性的目的。方法五十个病人包括 29 女性和 21 男性,与中部的年龄 62 年( 3582 年)和左 37 个盒子被对待, pemetrexed 在肿瘤学的部门与铂结合了,到2009年3月的从2006年6月的武汉大学的 Renmin 医院。挑选代理人政体:病人们收到了 pemetrexed 与每 21 天的白天 1 上的 500 mg/m2。联合政体:病人们收到了 pemetrexed 白天 1 上的 500 mg/m2 和 carboplatin 白天 1 上的 300 mg/m2 或 cisplatin 到白天 3 的白天 1 上的 35 mg/m2 或 nedaplatin 由有是的 21 天的静脉内的注入的白天 1 上的 80 mg/m2 一个周期。石柜 1.0 标准被用来评估临床的效率,并且 WHO 毒性标准被用来评估有毒的反应,和 QOL 被用来评估生活的质量。所有病人被给 162 个周期的结果(至少 2 个周期,至多, 6 骑车) 并且所有病人的反应率被评估。有 2 完全的宽恕(CR ) , 7 部分宽恕(PR ) , 22 稳定的疾病(SD ) 和在这个组,的 19 进步疾病(PD ) 全面反应率是(RR ) 是 18.0% 并且疾病控制率(DCR )62.0% 。生活改进率的质量到达 58.0% 。主要有毒的反应包括了嗜中性白血球减少症, thrombocytopenia, hypemia,恶心,并且呕吐。大多数这些效果的严厉等级 III 和井被容忍。有在先进非小的房间肺癌症的治疗与铂相结合的 pemetrexed 或 pemetrexed 的结论化疗有效、安全、井可容忍,它能改进病人的生活的质量。 | Yongfa Zheng Wei Ge Ling Zhang Zhenyu Zhao Fangfang Jie | 2011 | The Chinese-German Journal of Clinical Oncology2011，10，3： | 4 |
| 6 | Differentially private high-dimensional data publication via grouping and truncating techniques显示文摘The count of one column for high-dimensional datasets, i.e., the number of records containing this column, has been widely used in nuinerous applications such as analyzing popular spots based on check-in location information and mining valuable items from shopping records. However, this poses a privacy threat when directly publishing this information. Differential privacy (DP), as a notable paradigm for strong privacy guarantees, is thereby adopted to publish all column counts. Prior studies have verified that truncating records or grouping columns can effectively improve the accuracy of published results. To leverage the advantages of the two techniques, we combine these studies to further boost the accuracy of published results. However, the traditional penalty function, which measures the error imported by a given pair of parameters including truncating length and group size, is so sensitive that the derived parameters deviate from the optimal parameters significantly. To output preferable parameters, we first design a smart penalty function that is less sensitive than the traditional function. Moreover, a two-phase selection method is proposed to compute these parameters efficiently, together with the improvement in accuracy. Extensive experiments on a broad spectrum of real-world datasets validate the effectiveness of our proposals. | Ning WANG Yu GU Jia XU Fangfang LI Ge YU | 2019 | Frontiers of Computer Science2019，13，2： | 3 |
| 7 | SUMOylation-modified Pelota-Hbs1 RNA surveillance complex restricts the infection of potyvirids in plants显示文摘RNA quality control nonsense-mediated decay is involved in viral restriction in both plants and animals.However,it is not known whether two other RNA quality control pathways,nonstop decay and no-go decay,are capable of restricting viruses in plants.Here,we show that the evolutionarily conserved Pelota–Hbs1 complex negatively regulates infection of plant viruses in the family Potyviridae(termed potyvirids),the largest group of plant RNA viruses that accounts for more than half of the viral crop damage worldwide.Pelota enables the recognition of the functional G1-2A6-7 motif in the P3 cistron,which is conserved in almost all potyvirids.This allows Pelota to target the virus and act as a viral restriction factor.Furthermore,Pelota interacts with the SUMO E2-conjugating enzyme SCE1 and is SUMOylated in planta.Blocking Pelota SUMOylation disrupts the ability to recruit Hbs1 and inhibits viral RNA degradation.These findings reveal the functional importance of Pelota SUMOylation during the infection of potyvirids in plants. | Linhao Ge Buwei Cao Rui Qiao Hongguang Cui Shaofang Li Hongying Shan Pan Gong Mingzhen Zhang Hao Li Aiming Wang Xueping Zhou Fangfang Li | 2023 | Molecular Plant2023，16，3： | 2 |
| 8 | A Critical Role of Activin A in Maturation of Mouse Peritoneal Macrophages in vitro and in vivo显示文摘Activin A,转变生长因素贝它(TGF-) 的一个多功能的因素总科,被 microglia 和巨噬细胞主要生产,并且它的反煽动性并且支持 inflammatory 活动是与巨噬细胞功能有关的两个。然而,在 vivo 的剩余的巨噬细胞上的 activin A 的直接效果仍然保持不清楚。在现在的学习,结果显示出那 activin A 不仅不增加了并且 IL-1 版本,而且在 vitro 并且在 vivo 的鼠标腹巨噬细胞的支持的吞噬细胞的能力,而它没影响 MHC 我和 MHC II 表示。而且,我们显著地发现那 activin A upregulated CD14 和 CD68 的表情,成熟巨噬细胞的标记,在在 vitro 并且在 vivo 的巨噬细胞的表面上。这些数据建议 activin A 能在 vitro 并且在 vivo 导致主要巨噬细胞成熟,但是不能经由调整涉及抗原的表示的 MHC 分子的表示触发获得的有免疫力的反应。 | Yinan Wang Xueling Cui Guixiang Tai Jingyan Ge Nan Li Fangfang Chen Fang Yu Zhonghui Liu | 2009 | Cellular & Molecular Immunology2009，6，5： | 2 |
| 9 | The controllable growth of Co-BaTiO3 nanocomposite epitaxial film by laser显示文摘 | Ge Fangfang Bai Li Wu Weidong | 2010 | Journalof Crystal Growth2010，312，： | 1 |
| 10 | Controllable growth of nanocomposite films with metal nanocrystals sandwiched between dielectric superlattices显示文摘 | Ge Fangfang Wang Xuemin Li Yunong | 2011 | Journal Nanopart Research2011，13，： | 1 |
| 11 | Overexpression of long noncoding RNA PCAT-1 is a novel biomarker of poor prognosis in patients with colorectal cancer显示文摘 | Xiaosong Ge Yuanbin Chen Xiaoyu Liao Deqing Liu Fangfang Li Honglian Ruan Weihua Jia | 2013 | Medical Oncology2013，，2： | 1 |
| 12 | Overexpression of long noncoding RNA PCAT-1 is a novel biomarker of poor prognosis in patients with colorectal cancer显示文摘 | Xiaosong Ge Yuanbin Chen Xiaoyu Liao Deqing Liu Fangfang Li Honglian Ruan Weihua Jia | 2013 | Medical Oncology2013，，2： | 1 |
| 13 | HIV and HCV Infection Status Among Drug Users--China, 2010−2018显示文摘What is already known about this topic?It is known that drug users(DUs)was brought into human immunodeficiency virus(HIV)sentinel surveillance as HIV related high-risk group since 1990s with a higher HIV antibody positive rate in the early stage.What is added by this report?This study not only showed that HIV antibody positive rate had decreased steadily since 2010 and maintained stable in past 4 years,but also showed that the proportion of the new narcotic and the mixed drug users increased since 2010 and HIV antibody positive rate of mixed abuse users increased year by year.What are the implications for public health practice?Some existing policies and strategies publicity,education and interventions require adjustments since new narcotic drug users contributed to DUs HIV infections.The challenge of HIV infection and transmission among drug users abusing both traditional and new narcotic drugs also require more attention. | Lin Ge Dongmin Li Peilong Li Shuquan Qu Fangfang Chen Fan Lyu | 2020 | China CDC weekly2020，2，7： | 1 |
| 14 | Controllable growth of nanocomposite films with metal nanocrystals sandwiched between di electric superlattices显示文摘 | Ge Fangfang Wang Xuemin Li Yunong | 2011 | J Nanopart Research2011，13，12： | 1 |
| 15 | Generation of Induced Pluripotent Stem Cells from Adult Rhesus Monkey Fibroblasts显示文摘 | Haisong Liu Fangfang Zhu Jun Yong Pengbo Zhang Pingping Hou Honggang Li Wei Jiang Jun Cai Meng Liu Kai Cui Xiuxia Qu Tingting Xiang Danyu Lu Xiaochun Chi Ge Gao Weizhi Ji Mingxiao Ding Hongkui Deng | 2008 | Cell Stem Cell2008，，6： | 1 |
| 16 | Generation of Induced Pluripotent Stem Cells from Adult Rhesus Monkey Fibroblasts显示文摘 | Haisong Liu Fangfang Zhu Jun Yong Pengbo Zhang Pingping Hou Honggang Li Wei Jiang Jun Cai Meng Liu Kai Cui Xiuxia Qu Tingting Xiang Danyu Lu Xiaochun Chi Ge Gao Weizhi Ji Mingxiao Ding Hongkui Deng | 2008 | Cell Stem Cell2008，，6： | 1 |
| 17 | Pepino mosaic virus antagonizes plant m^(6)A modification by promoting the autophagic degradation of the m^(6)A writer HAKAI显示文摘Autophagy plays an active anti-viral role in plants.Increasing evidence suggests that viruses can inhibit or manipulate autophagy,thereby winning the arms race between plants and viruses.Here,we demonstrate that overexpression of an m^(6)A writer from Solanum lycopersicum,SlHAKAI,could negatively regulate pepino mosaic virus(PepMV)infection,inhibit viral RNA and protein accumulations by affecting viral m^(6)A levels in tomato plants and vice versa.The PepMV-encoded RNA-dependent RNA polymerase(RdRP)directly interacts with SlHAKAI and reduces its protein accumulation.The RdRP-mediated decreased protein accumulation of SlHAKAI is sensitive to the autophagy inhibitor 3-methyladenine and is compromised by knocking down a core autophagy gene.Furthermore,PepMV RdRP could interact with an essential autophagy-related protein,SlBeclin1.RdRP,SlHAKAI,and SlBeclin1 interaction complexes form bright granules in the cytoplasm.Silencing of Beclin1 in Nicotiana benthamiana plants abolishes the RdRP-mediated degradation of SlHAKAI,indicating the requirement of Beclin1 in this process.This study uncovers that the PepMV RdRP exploits the autophagy pathway by interacting with SlBeclin1 to promote the autophagic degradation of the SlHAKAI protein,thereby inhibiting the m^(6)A modification-mediated plant defense responses. | Hao He Linhao Ge Zhaolei Li Xueping Zhou Fangfang Li | 2023 | aBIOTECH2023，4，2： | 1 |
| 18 | m^(6)A modification of plant virus enables host recognition by NMD factors in plants显示文摘N^(6)-methyladenosine(m^(6)A)is the most abundant eukaryotic mRNA modification and is involved in various biological processes.Increasing evidence has implicated that m^(6)Amodification is an important anti-viral defense mechanism in mammals and plants,but it is largely unknown how m^(6)Aregulates viral infection in plants.Here we report the dynamic changes and functional anatomy of m^(6)Ain Nicotiana benthamiana and Solanum lycopersicum during Pepino mosaic virus(PepMV)infection.m^(6)Amodification in the PepMV RNA genome is conserved in these two species.Overexpression of the m^(6)Awriters,mRNA adenosine methylase A(MTA),and HAKAI inhibit the PepMV RNA accumulation accompanied by increased viral m^(6)Amodifications,whereas deficiency of these writers decreases the viral RNA m^(6)Alevels but enhances virus infection.Further study reveals that the cytoplasmic YTH-domain family protein NbECT2A/2B/2C as m^(6)Areaders are involved in anti-viral immunity.Protein-protein interactions indicate that NbECT2A/2B/2C interact with nonsense-mediated mRNA decay(NMD)-related proteins,including NbUPF3 and NbSMG7,but not with NbUPF1.m^(6)Amodification-mediated restriction to PepMV infection is dependent on NMD-related factors.These findings provide new insights into the functionality of m^(6)Aanti-viral activity and reveal a distinct immune response that NMD factors recognize the m^(6)Areaders-viral m^(6)ARNA complex for viral RNA degradation to limit virus infection in plants. | Hao He Linhao Ge Yalin Chen Siwen Zhao Zhaolei Li Xueping Zhou Fangfang Li | 2024 | Science China(Life Sciences)2024，67，1： | 0 |
| 19 | Plant and animal positive-sense single-stranded RNA viruses encode small proteins important for viral infection in their negative-sense strand显示文摘Positive-sense single-stranded RNA(+ssRNA)viruses,the most abundant viruses of eukaryotes in nature,require the synthesis of negative-sense RNA(-RNA)using their genomic(positive-sense)RNA(+RNA)as a template for replication.Based on current evidence,viral proteins are translated via viral+RNAs,whereas-RNA is considered to be a viral replication intermediate without coding capacity.Here,we report that plant and animal+ssRNA viruses contain small open reading frames(ORFs)in their-RNA(reverse ORFs[rORFs]).Using turnip mosaic virus(TuMV)as a model for plant+ssRNA viruses,we demonstrate that small proteins encoded by rORFs display specific subcellularlocalizations,and confirm the presence of rORF2 in infected cells through mass spectrometry analysis.The protein encoded by TuMV rORF2 forms punctuate granules that are localized in the perinuclear region and co-localized with viral replication complexes.The rORF2 protein can directly interact with the viral RNA-dependent RNA polymerase,and mutation of rORF2 completely abolishes virus infection,whereas ectopic expression of rORF2 rescues the mutant virus.Furthermore,we show that several rORFs in the-RNA of severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)have the ability to suppress type l interferon production and facilitate the infection of ve-sicular stomatitis virus.In addition,we provide evidence that TuMV might utilize internal ribosome entry sites to translate these small rORFs.Taken together,these findings indicate that the-RNA of+ssRNA vi-ruses can also have the coding capacity and that small proteins encoded therein play critical roles in viral infection,revealing a viral proteome larger than previously thought. | Pan Gong Qingtang Shen Mingzhen Zhang Rui Qiao Jing Jiang Lili Su Siwen Zhao Shuai Fu Yu Ma Linhao Ge Yaqin Wang Rosa Lozano-Durán Aiming Wang Fangfang Li Xueping Zhou | 2023 | Molecular Plant2023，16，11： | 0 |
| 20 | Synthesis of Fe-doped carbon hybrid composed of CNT/flake-like carbon for catalyzing oxygen reduction显示文摘Carbon-based materials with tunable properties have emerged as promising candidates to replace Pt-based catalysts for accelerating oxygen reduction reaction(ORR)in fuel cells or metal-air batteries.In this work,we constructed a carbon hybrid which consists of one-dimensional(1D)carbon nanotubes and flake-like carbons by pyrolysis of leaf-like metal-organic frameworks.The optimal hybrid electrocatalyst of Fe_(7%)-L-CNT-900 possesses the desired features for ORR,including active Fe species,high degree of graphitization,large specific surface area,and hierarchical porous structures.Consequently,Fe_(7%)-L-CNT900 performs a high electrocatalytic activity for ORR with a half-wave potential of 0.88 V,which is comparable to that of Pt/C(20 wt.%).This strategy provides an insight into the investigation of highly efficient and low-cost composite electrocatalyst for oxygen reduction reaction. | Fangfang Tang Wei Xia Hongjuan Zhang Lingling Zheng Yingji Zhao Jianping Ge Jing Tang | 2022 | Nano Research2022，15，7： | 0 |
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